Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis

Science

Volumn 313, Issue 5791, 2006, Pages 1261-1266

  Tyler, Brett M ^a   Tripathy, Sucheta ^a   Zhang, Xuemin ^a   Dehal, Paramvir ^b,c   Jiang, Rays H Y ^a,d   Aerts, Andrea ^b,c   Arredondo, Felipe D ^a   Baxter, Laura ^e   Bensasson, Douda ^b,c,f   Beynon, Jim L ^e   Chapman, Jarrod ^b,c,g   Damasceno, Cynthia M B ^h   Dorrance, Anne E ⁱ   Dou, Daolong ^a   Dickerman, Allan W ^a   Dubchak, Inna L ^b,c   Garbelotto, Matteo ^j   Gijzen, Mark ^k   Gordon, Stuart G ⁱ   Govers, Francine ^d   Grunwald, Niklaus J ^l   Huang, Wayne ^b,m   Ivors, Kelly L ^j,n   Jones, Richard W ^o   Kamoun, Sophien ⁱ   Krampis, Konstantinos ^a   Lamour, Kurt H ^p   Lee, Mi Kyung ^q   McDonald, W Hayes ^r   Medina, Mónica ^s   Meijer, Harold J G ^d   Nordberg, Eric K ^a   Maclean, Donald J ^t   Ospina Giraldo, Manuel D ^u   Morris, Paul F ^v   Phuntumart, Vipaporn ^v   Putnam, Nicholas H ^b,c   Rash, Sam ^b,m   Rose, Jocelyn K C ^h   Sakihama, Yasuko ^w   Salamov, Asaf A ^b,c   Savidor, Alon ^p   Scheuring, Chantel F ^q   Smith, Brian M ^a   Sobral, Bruno W S ^a   Terry, Astrid ^b,m   Torto Alalibo, Trudy A ^a   Win, Joe ⁱ   Xu, Zhanyou ^q   Zhang, Hongbin ^q   Grigoriev, Igor V ^b,c   Rokhsar, Daniel S ^b,g   Boore, Jeffrey L ^b,c,g,x   more..

^a VIRGINIA BIOINFORMATICS INSTITUTE   (United States)

^b DOE JOINT GENOME INSTITUTE   (United States)

^c LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^d WAGENINGEN UNIVERSITY   (Netherlands)

^e UNIVERSITY OF WARWICK   (United Kingdom)

^f IMPERIAL COLLEGE LONDON   (United Kingdom)

^g UNIVERSITY OF CALIFORNIA   (United States)

^h Cornell University ^*  (United States)

ⁱ OHIO STATE UNIVERSITY   (United States)

^j UNIVERSITY OF CALIFORNIA   (United States)

^k AGRICULTURE AND AGRI FOOD CANADA   (Canada)

^l HORTICULTURAL CROPS RESEARCH LABORATORY   (United States)

^m LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

ⁿ NORTH CAROLINA STATE UNIVERSITY   (United States)

^o AGRICULTURAL RESEARCH SERVICE   (United States)

^p UNIVERSITY OF TENNESSEE   (United States)

^q TEXAS A AND M UNIVERSITY   (United States)

^r OAK RIDGE NATIONAL LABORATORY   (United States)

^s UNIVERSITY OF CALIFORNIA   (United States)

^t UNIVERSITY OF QUEENSLAND   (Australia)

^u WILKES UNIVERSITY   (United States)

^v BOWLING GREEN STATE UNIVERSITY   (United States)

^w HOKKAIDO UNIVERSITY   (Japan)

^x Genome Project Solutions   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

EVOLUTIONARY ORIGINS; PATHOGENESIS; PROTEIN TOXINS; STRAMENOPILA;

ALGAE; BIODIVERSITY; MICROORGANISMS; MUTAGENESIS; PATHOLOGY; PROTEINS;

GENES;

2 ISOPROPYLMALATE SYNTHASE; ABC TRANSPORTER; AMINO ACID; CARBOXYLASE; HYDROLASE; LEUCINE; MUTASE; PROTEINASE INHIBITOR; PURINE; TOXIN;

EVOLUTIONARY BIOLOGY; FUNGUS; GENOME; PARASITIC DISEASE; PATHOGEN; PLANT; TOXIN;

ARTICLE; BIOSYNTHESIS; EVOLUTION; GENOME; MULTIGENE FAMILY; NONHUMAN; OAK; OOMYCETES; PATHOGENESIS; PHOTOSYNTHESIS; PHYTOPHTHORA; PLANT DISEASE; PLANT PATHOGEN INTERACTION; PRIORITY JOURNAL; PROTEIN FAMILY; SOYBEAN; SUDDEN OAK DEATH;

ALGAL PROTEINS; DNA, ALGAL; EVOLUTION; GENES; GENOME; HYDROLASES; PHOTOSYNTHESIS; PHYLOGENY; PHYSICAL CHROMOSOME MAPPING; PHYTOPHTHORA; PLANT DISEASES; POLYMORPHISM, SINGLE NUCLEOTIDE; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; SYMBIOSIS; TOXINS, BIOLOGICAL;

ALGAE; BACILLARIOPHYTA; GLYCINE MAX; OOMYCETES; PHYTOPHTHORA; PHYTOPHTHORA RAMORUM; PHYTOPHTHORA SOJAE; STRAMENOPILES;

EID: 33748329373     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1128796     Document Type: Article

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33. We thank M. Arnaud, G. Cai, S. Constanzo, M. DiLeo, S. Doyle, C. Paeper, L. Waller, and L. Zhou for their contributions to the annotation of the P. sojae and P. ramorum sequences; C. Volker and M. Chibucos for manuscript preparation; and J. Mullins for preparation of illustrations. This work was supported by grants to B.M.T. from the National Research Initiative of the USDA Cooperative State Research, Education, and Extension Service, grant numbers 00-52100-9684, 2001-35319-14251, and 2002-35600-12747; from the U.S. National Science Foundation, grant numbers MCB-0242131 and EF-0130263; and by funds from the U.S. Department of Energy Joint Genome Institute and the Virginia Bioinformatics Institute. Much of this work was performed under the auspices of the U.S. Department of Energy's Office of Science, Biological, and Environmental Research Program and by University of California, Lawrence Livermore National Laboratory under contract no. W-7405-Eng-48; Lawrence Berkeley National Laboratory under contract no. DE-AC02-05CH11231; and Los Alamos National Laboratory under contract no. W-7405-ENG-36. R.H.Y.J. was supported by Aspasia grant no. 015.000.057 from the Netherlands Science Foundation and fellowship NGI 050-72-404 from Netherlands Genomics Initiative. The P. sojae and P. ramorum whole-genome shotgun projects have been deposited at DDBJ/EMBL/GenBank under the project accessions AAQY00000000 and AAQX00000000, respectively. The versions described in this paper are the first versions, AAQY01000000 and AAQX01000000, respectively.