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Volumn 7, Issue , 2007, Pages

Origin and diversification of the basic helix-loop-helix gene family in metazoans: Insights from comparative genomics

Author keywords

[No Author keywords available]

Indexed keywords

HELIX LOOP HELIX PROTEIN;

EID: 33947252158     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-7-33     Document Type: Article
Times cited : (240)

References (74)
  • 1
    • 0033980393 scopus 로고    scopus 로고
    • Helix-Loop-Helix proteins: Regulators of transcription in eucaryotic organisms
    • 10611221. 10.1128/MCB.20.2.429-440.2000
    • Helix-Loop-Helix proteins: regulators of transcription in eucaryotic organisms. ME Massari C Murre, Mol Cell Biol 2000 20 429 440 10611221 10.1128/MCB.20.2.429-440.2000
    • (2000) Mol Cell Biol , vol.20 , pp. 429-440
    • Massari, M.E.1    Murre, C.2
  • 2
    • 4043141372 scopus 로고    scopus 로고
    • An overview of the basic helix-loop-helix proteins
    • 15186484. 10.1186/gb-2004-5-6-226
    • An overview of the basic helix-loop-helix proteins. S Jones, Genome Biol 2004 5 226 15186484 10.1186/gb-2004-5-6-226
    • (2004) Genome Biol , vol.5 , pp. 226
    • Jones, S.1
  • 3
    • 0031262875 scopus 로고    scopus 로고
    • PAS: A multifunctional domain family comes to light
    • 9382818
    • PAS: a multifunctional domain family comes to light. CP Pontig L Aravind, Curr Biol 1997 7 R674 677 9382818
    • (1997) Curr Biol , vol.7 , pp. 674-677
    • Pontig, C.P.1    Aravind, L.2
  • 4
    • 0035001937 scopus 로고    scopus 로고
    • The basic Helix-loop-Helix protein family: Comparative genomics and phylogenetic analysis
    • 11337472. 10.1101/gr.177001
    • The basic Helix-loop-Helix protein family: comparative genomics and phylogenetic analysis. V Ledent M Vervoort, Genome Res 2001 11 754 770 11337472 10.1101/gr.177001
    • (2001) Genome Res , vol.11 , pp. 754-770
    • Ledent, V.1    Vervoort, M.2
  • 5
    • 2442631981 scopus 로고    scopus 로고
    • Convergent evolution of gene networks by single-gene duplications in higher eukaryotes
    • 14968135. 10.1038/sj.embor.7400096
    • Convergent evolution of gene networks by single-gene duplications in higher eukaryotes. GD Amoutzias DL Robertson SG Oliver E Bornberg-Bauer, EMBO Rep 2004 5 274 279 14968135 10.1038/sj.embor.7400096
    • (2004) EMBO Rep , vol.5 , pp. 274-279
    • Amoutzias, G.D.1    Robertson, D.L.2    Oliver, S.G.3    Bornberg-Bauer, E.4
  • 6
    • 0034164664 scopus 로고    scopus 로고
    • Saccharomyces cerevisiae basic Helix-Loop-Helix proteins regulate diverse biological processes
    • 10710415. 10.1093/nar/28.7.1499
    • Saccharomyces cerevisiae basic Helix-Loop-Helix proteins regulate diverse biological processes. KA Robinson JM Lopez, Nucleic Acids Res 2000 28 1499 1505 10710415 10.1093/nar/28.7.1499
    • (2000) Nucleic Acids Res , vol.28 , pp. 1499-1505
    • Robinson, K.A.1    Lopez, J.M.2
  • 7
    • 0034116376 scopus 로고    scopus 로고
    • The PAS superfamily: Sensors of environmental and developmental signals
    • 10.1146/annurev.pharmtox.40.1.519. 10836146
    • The PAS superfamily: sensors of environmental and developmental signals. YZ Gu JB Hogenesch CA Bradfield, Annu Rev Pharmacol Toxicol 2000 40 519 561 10.1146/annurev.pharmtox.40.1.519 10836146
    • (2000) Annu Rev Pharmacol Toxicol , vol.40 , pp. 519-561
    • Gu, Y.Z.1    Hogenesch, J.B.2    Bradfield, C.A.3
  • 8
    • 0035904463 scopus 로고    scopus 로고
    • Function and regulation of the transcription factors of the Myc/Max/Mad network
    • 10.1016/S0378-1119(01)00697-7. 11602341
    • Function and regulation of the transcription factors of the Myc/Max/Mad network. B Luscher, Gene 2001 277 1 14 10.1016/S0378-1119(01)00697-7 11602341
    • (2001) Gene , vol.277 , pp. 1-14
    • Luscher, B.1
  • 9
    • 0034641745 scopus 로고    scopus 로고
    • A genomewide survey of basic helix-loop-helix factors in Drosophila
    • 10973473. 10.1073/pnas.170301897
    • A genomewide survey of basic helix-loop-helix factors in Drosophila. AW Moore S Barbel LY Jan YN Jan, Proc Natl Acad Sci 2000 97 10436 10441 10973473 10.1073/pnas.170301897
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 10436-10441
    • Moore, A.W.1    Barbel, S.2    Jan, L.Y.3    Jan, Y.N.4
  • 10
    • 0034967571 scopus 로고    scopus 로고
    • New members of the Drosophila Myc transcription factor subfamily revealed by a genome-wide examination for basic Helix-Loop-Helix genes
    • 10.1016/S0925-4773(01)00360-4. 11404084
    • New members of the Drosophila Myc transcription factor subfamily revealed by a genome-wide examination for basic Helix-Loop-Helix genes. S Peyrefitte D Kahn M Haenlin, Mech Dev 2001 104 99 104 10.1016/S0925-4773(01)00360-4 11404084
    • (2001) Mech Dev , vol.104 , pp. 99-104
    • Peyrefitte, S.1    Kahn, D.2    Haenlin, M.3
  • 11
    • 18744421788 scopus 로고    scopus 로고
    • Phylogenetic analysis of the human basic helix-Loop-Helix proteins
    • 10.1186/gb-2002-3-6-research0030
    • Phylogenetic analysis of the human basic helix-Loop-Helix proteins. V Ledent O Paquet M Vervoort, Genome Biol 2002 3 0030.1 0030.18 10.1186/gb-2002-3-6-research0030
    • (2002) Genome Biol , vol.3 , pp. 00301-003018
    • Ledent, V.1    Paquet, O.2    Vervoort, M.3
  • 12
    • 0038150206 scopus 로고    scopus 로고
    • A genomewide survey of developmentally relevant genes in Ciona intestinalis. I. Genes for bHLH transcription factors
    • 10.1007/s00427-003-0319-7. 12736824
    • A genomewide survey of developmentally relevant genes in Ciona intestinalis. I. Genes for bHLH transcription factors. Y Satou KS Imai M Levine Y Kohara D Rokhsar N Satoh, Dev Genes Evol 2003 213 213 221 10.1007/s00427-003- 0319-7 12736824
    • (2003) Dev Genes Evol , vol.213 , pp. 213-221
    • Satou, Y.1    Imai, K.S.2    Levine, M.3    Kohara, Y.4    Rokhsar, D.5    Satoh, N.6
  • 13
    • 0042421751 scopus 로고    scopus 로고
    • The Arabidopsis basic/helix-loop-helix transcription factor family
    • 10.1105/tpc.013839
    • The Arabidopsis basic/helix-loop-helix transcription factor family. G Toledo-Ortiz E Huq PH Quail, Plant Cell 2003 5 1749 1770 10.1105/tpc.013839
    • (2003) Plant Cell , vol.5 , pp. 1749-1770
    • Toledo-Ortiz, G.1    Huq, E.2    Quail, P.H.3
  • 14
    • 0037694799 scopus 로고    scopus 로고
    • The basic helix-loop-helix transcription factor family in plants: A genome-wide study of protein structure and functional diversity
    • 10.1093/molbev/msg088. 12679534
    • The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. MA Heim M Jakoby M Werber C Martin B Weisshaar PC Bailey, Mol Biol Evol 2003 20 735 747 10.1093/molbev/msg088 12679534
    • (2003) Mol Biol Evol , vol.20 , pp. 735-747
    • Heim, M.A.1    Jakoby, M.2    Werber, M.3    Martin, C.4    Weisshaar, B.5    Bailey, P.C.6
  • 15
    • 0038031605 scopus 로고    scopus 로고
    • Phylogenetic analysis of plant basic helix-loop-helix proteins
    • 10.1007/s00239-002-2449-3. 12911037
    • Phylogenetic analysis of plant basic helix-loop-helix proteins. MJ Buck WR Atchley, J Mol Evol 2003 56 742 750 10.1007/s00239-002-2449-3 12911037
    • (2003) J Mol Evol , vol.56 , pp. 742-750
    • Buck, M.J.1    Atchley, W.R.2
  • 17
    • 0031008399 scopus 로고    scopus 로고
    • A natural classification of the basic helix-loop-helix class of transcription factors
    • 9144210. 10.1073/pnas.94.10.5172
    • A natural classification of the basic helix-loop-helix class of transcription factors. WR Atchley WM Fitch, Proc Natl Acad Sci USA 1997 94 5172 5176 9144210 10.1073/pnas.94.10.5172
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 5172-5176
    • Atchley, W.R.1    Fitch, W.M.2
  • 18
    • 0034824528 scopus 로고    scopus 로고
    • The COE - Collier/Olf1/EBF - Transcription factors: Structural conservation and diversity of developmental functions
    • 10.1016/S0925-4773(01)00486-5. 11578857
    • The COE - Collier/Olf1/EBF - transcription factors: structural conservation and diversity of developmental functions. L Dubois A Vincent, Mech Dev 2001 108 3 12 10.1016/S0925-4773(01)00486-5 11578857
    • (2001) Mech Dev , vol.108 , pp. 3-12
    • Dubois, L.1    Vincent, A.2
  • 19
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • 10.2307/2412448. 5449325
    • Distinguishing homologous from analogous proteins. WM Fitch, Syst Zool 1970 19 99 113 10.2307/2412448 5449325
    • (1970) Syst Zool , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 22
    • 33749402982 scopus 로고    scopus 로고
    • The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: Evidence from the starlet sea anemone, Nematostella vectensis
    • 16867185. 10.1186/gb-2006-7-7-r64
    • The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: Evidence from the starlet sea anemone, Nematostella vectensis. JF Ryan PM Burton ME Mazza GK Kwong JC Mullikin JR Finnerty, Genome Biol 2006 7 R64 16867185 10.1186/gb-2006-7-7-r64
    • (2006) Genome Biol , vol.7 , pp. 64
    • Ryan, J.F.1    Burton, P.M.2    Mazza, M.E.3    Kwong, G.K.4    Mullikin, J.C.5    Finnerty, J.R.6
  • 23
    • 12544255323 scopus 로고    scopus 로고
    • The real 'kingdoms' of eukaryotes
    • 10.1016/j.cub.2004.08.038. 15341755
    • The real 'kingdoms' of eukaryotes. AG Simpson AJ Roger, Curr Biol 2004 14 R693 696 10.1016/j.cub.2004.08.038 15341755
    • (2004) Curr Biol , vol.14 , pp. 693-696
    • Simpson, A.G.1    Roger, A.J.2
  • 25
    • 7444237566 scopus 로고    scopus 로고
    • The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils?
    • 15494441. 10.1073/pnas.0403984101
    • The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils? EJ Douzery EA Snell E Bapteste F Delsuc H Philippe, Proc Natl Acad Sci USA 2004 101 15386 15391 15494441 10.1073/pnas.0403984101
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15386-15391
    • Douzery, E.J.1    Snell, E.A.2    Bapteste, E.3    Delsuc, F.4    Philippe, H.5
  • 26
    • 24644486449 scopus 로고    scopus 로고
    • Timing and mechanism of ancient vertebrate genome duplications - The adventure of a hypothesis
    • 10.1016/j.tig.2005.08.004. 16099069
    • Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis. G Panopoulou AJ Poustka, Trends Genet 2005 21 559 567 10.1016/j.tig.2005.08.004 16099069
    • (2005) Trends Genet , vol.21 , pp. 559-567
    • Panopoulou, G.1    Poustka, A.J.2
  • 28
    • 33646481487 scopus 로고    scopus 로고
    • Axial patterning and diversification in the cnidaria predate the Hox system
    • 10.1016/j.cub.2006.03.036. 16563766
    • Axial patterning and diversification in the cnidaria predate the Hox system. K Kamm B Schierwater W Jakob SL Dellaporta DJ Miller, Curr Biol 2006 16 920 926 10.1016/j.cub.2006.03.036 16563766
    • (2006) Curr Biol , vol.16 , pp. 920-926
    • Kamm, K.1    Schierwater, B.2    Jakob, W.3    Dellaporta, S.L.4    Miller, D.J.5
  • 29
    • 29444441158 scopus 로고    scopus 로고
    • Genomic inventory and expression of Sox and Fox genes in the cnidarian Nematostella vectensis
    • 10.1007/s00427-005-0022-y. 16193320
    • Genomic inventory and expression of Sox and Fox genes in the cnidarian Nematostella vectensis. CR Magie K Pang MQ Martindale, Dev Genes Evol 2005 215 618 630 10.1007/s00427-005-0022-y 16193320
    • (2005) Dev Genes Evol , vol.215 , pp. 618-630
    • Magie, C.R.1    Pang, K.2    Martindale, M.Q.3
  • 30
    • 33644748112 scopus 로고    scopus 로고
    • Dorso/ventral genes are asymmetrically expressed and involved in germ-layer demarcation during cnidarian gastrulation
    • 10.1016/j.cub.2006.01.052. 16527745
    • Dorso/ventral genes are asymmetrically expressed and involved in germ-layer demarcation during cnidarian gastrulation. DQ Matus GH Thomsen MQ Martindale, Curr Biol 2006 16 499 505 10.1016/j.cub.2006.01.052 16527745
    • (2006) Curr Biol , vol.16 , pp. 499-505
    • Matus, D.Q.1    Thomsen, G.H.2    Martindale, M.Q.3
  • 31
    • 33746610113 scopus 로고    scopus 로고
    • Molecular evidence for deep evolutionary roots of bilaterality in animal development
    • 16837574. 10.1073/pnas.0601257103
    • Molecular evidence for deep evolutionary roots of bilaterality in animal development. DQ Matus K Pang H Marlow CW Dunn GH Thomsen MQ Martindale, Proc Natl Acad Sci USA 2006 103 11195 11200 16837574 10.1073/pnas.0601257103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 11195-11200
    • Matus, D.Q.1    Pang, K.2    Marlow, H.3    Dunn, C.W.4    Thomsen, G.H.5    Martindale, M.Q.6
  • 32
    • 33746917200 scopus 로고    scopus 로고
    • Asymmetric expression of the BMP antagonists chordin and gremlin in the sea anemone Nematostella vectensis: Implications for the evolution of axial patterning
    • 10.1016/j.ydbio.2006.06.003. 16828077
    • Asymmetric expression of the BMP antagonists chordin and gremlin in the sea anemone Nematostella vectensis: Implications for the evolution of axial patterning. F Rentzsch R Anton M Saina M Hammerschmidt TW Holstein U Technau, Dev Biol 2006 296 375 387 10.1016/j.ydbio.2006.06.003 16828077
    • (2006) Dev Biol , vol.296 , pp. 375-387
    • Rentzsch, F.1    Anton, R.2    Saina, M.3    Hammerschmidt, M.4    Holstein, T.W.5    Technau, U.6
  • 33
    • 3442896308 scopus 로고    scopus 로고
    • A simple plan - Cnidarians and the origins of developmental mechanisms
    • 10.1038/nrg1402. 15266339
    • A simple plan - cnidarians and the origins of developmental mechanisms. EE Ball DC Hayward R Saint DJ Miller, Nat Rev Genet 2004 5 567 577 10.1038/nrg1402 15266339
    • (2004) Nat Rev Genet , vol.5 , pp. 567-577
    • Ball, E.E.1    Hayward, D.C.2    Saint, R.3    Miller, D.J.4
  • 34
    • 33845621117 scopus 로고    scopus 로고
    • Ancient complexity of the non-Hox ANTP gene complement in the anthozoan Nematostella vectensis. Implications for the evolution of the ANTP superclass
    • 10.1002/jez.b.21123. 16838293
    • Ancient complexity of the non-Hox ANTP gene complement in the anthozoan Nematostella vectensis. Implications for the evolution of the ANTP superclass. K Kamm B Schierwater, J Exp Zoolog B Mol Dev Evol 2006 306 589 596 10.1002/jez.b.21123 16838293
    • (2006) J Exp Zoolog B Mol Dev Evol , vol.306 , pp. 589-596
    • Kamm, K.1    Schierwater, B.2
  • 35
    • 3042705822 scopus 로고    scopus 로고
    • Investigating the origins of triploblasty: 'Mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; Class, Anthozoa)
    • 10.1242/dev.01119. 15128674
    • Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa). MQ Martindale K Pang JR Finnerty, Development 2004 131 2463 2474 10.1242/dev.01119 15128674
    • (2004) Development , vol.131 , pp. 2463-2474
    • Martindale, M.Q.1    Pang, K.2    Finnerty, J.R.3
  • 36
    • 1842741349 scopus 로고    scopus 로고
    • The ancestral role of COE genes may have been in chemoreception: Evidence from the development of the sea anemone, Nematostella vectensis (Phylum Cnidaria; Class Anthozoa)
    • 10.1007/s00427-004-0383-7. 14752662
    • The ancestral role of COE genes may have been in chemoreception: evidence from the development of the sea anemone, Nematostella vectensis (Phylum Cnidaria; Class Anthozoa). K Pang DQ Matus MQ Martindale, Dev Genes Evol 2004 214 134 138 10.1007/s00427-004-0383-7 14752662
    • (2004) Dev Genes Evol , vol.214 , pp. 134-138
    • Pang, K.1    Matus, D.Q.2    Martindale, M.Q.3
  • 37
    • 33646485296 scopus 로고    scopus 로고
    • Developmental expression of transcription factor genes in a demosponge: Insights into the origin of metazoan multicellularity
    • 10.1111/j.1525-142X.2006.00086.x. 16509894
    • Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity. C Larroux B Fahey D Liubicich VF Hinman M Gauthier M Gongora K Green G Worheide SP Leys BM Degnan, Evol Dev 2006 8 150 173 10.1111/j.1525-142X.2006.00086.x 16509894
    • (2006) Evol Dev , vol.8 , pp. 150-173
    • Larroux, C.1    Fahey, B.2    Liubicich, D.3    Hinman, V.F.4    Gauthier, M.5    Gongora, M.6    Green, K.7    Worheide, G.8    Leys, S.P.9    Degnan, B.M.10
  • 38
    • 0030443207 scopus 로고    scopus 로고
    • Sponge phylogeny, animal monophyly, and the origin of the nervous system: 18S rRNA evidence
    • Sponge phylogeny, animal monophyly, and the origin of the nervous system: 18S rRNA evidence. T Cavalier-Smith MT Allsopp EE Chao N Boury-Esnault J Vacelet, Can J Zool 1996 74 2031 2045
    • (1996) Can J Zool , vol.74 , pp. 2031-2045
    • Cavalier-Smith, T.1    Allsopp, M.T.2    Chao, E.E.3    Boury-Esnault, N.4    Vacelet, J.5
  • 39
    • 0001284561 scopus 로고    scopus 로고
    • Phylogeny of the Metazoa based on morphological and 18S ribosomal DNA evidence
    • Phylogeny of the Metazoa based on morphological and 18S ribosomal DNA evidence. J Zrzavy S Mihulka P Kepka A Bezdek, Cladistics 1998 14 249 285
    • (1998) Cladistics , vol.14 , pp. 249-285
    • Zrzavy, J.1    Mihulka, S.2    Kepka, P.3    Bezdek, A.4
  • 41
    • 3843090680 scopus 로고    scopus 로고
    • Molecular phylogeny of Demospongiae: Implications for classification and scenarios of character evolution
    • 10.1016/j.ympev.2004.02.021. 15288059
    • Molecular phylogeny of Demospongiae: implications for classification and scenarios of character evolution. C Borchiellini C Chombard M Manuel E Alivon J Vacelet N Boury-Esnault, Mol Phylogenet Evol 2004 32 823 837 10.1016/j.ympev.2004.02.021 15288059
    • (2004) Mol Phylogenet Evol , vol.32 , pp. 823-837
    • Borchiellini, C.1    Chombard, C.2    Manuel, M.3    Alivon, E.4    Vacelet, J.5    Boury-Esnault, N.6
  • 42
    • 0141702035 scopus 로고    scopus 로고
    • Larval development in the Homoscleromorpha (Porifera, Demospongiae)
    • Larval development in the Homoscleromorpha (Porifera, Demospongiae). N Boury-Esnault A Ereskovsky C Bezac D Tokina, Invertebr Biol 2003 122 187 202
    • (2003) Invertebr Biol , vol.122 , pp. 187-202
    • Boury-Esnault, N.1    Ereskovsky, A.2    Bezac, C.3    Tokina, D.4
  • 43
    • 33747606753 scopus 로고    scopus 로고
    • Early evolution of animal cell signaling and adhesion genes
    • 16891419. 10.1073/pnas.0604065103
    • Early evolution of animal cell signaling and adhesion genes. SA Nichols W Dirks JS Pearse N King, Proc Natl Acad Sci USA 2006 103 12451 12456 16891419 10.1073/pnas.0604065103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 12451-12456
    • Nichols, S.A.1    Dirks, W.2    Pearse, J.S.3    King, N.4
  • 44
    • 0033883069 scopus 로고    scopus 로고
    • Doing the MATH: Is the mouse a good model for fly development?
    • 10921900
    • Doing the MATH: is the mouse a good model for fly development? BA Hassan HJ Bellen, Genes Dev 2000 14 1852 65 10921900
    • (2000) Genes Dev , vol.14 , pp. 1852-65
    • Hassan, B.A.1    Bellen, H.J.2
  • 45
    • 18244378809 scopus 로고    scopus 로고
    • Choanoflagellates
    • 10.1016/j.cub.2005.02.004. 15723775
    • Choanoflagellates. N King, Curr Biol 2005 15 R113 4 10.1016/j.cub.2005. 02.004 15723775
    • (2005) Curr Biol , vol.15 , pp. 113-4
    • King, N.1
  • 46
    • 4544229464 scopus 로고    scopus 로고
    • The unicellular ancestry of animal development
    • 10.1016/j.devcel.2004.08.010. 15363407
    • The unicellular ancestry of animal development. N King, Dev Cell 2004 7 313 325 10.1016/j.devcel.2004.08.010 15363407
    • (2004) Dev Cell , vol.7 , pp. 313-325
    • King, N.1
  • 47
    • 0037962406 scopus 로고    scopus 로고
    • Evolution of key cell signaling and adhesion protein families predates animal origins
    • 10.1126/science.1083853. 12869759
    • Evolution of key cell signaling and adhesion protein families predates animal origins. N King CT Hittinger SB Carroll, Science 2003 301 361 363 10.1126/science.1083853 12869759
    • (2003) Science , vol.301 , pp. 361-363
    • King, N.1    Hittinger, C.T.2    Carroll, S.B.3
  • 53
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • 10508846. 10.1101/gr.9.9.868
    • CAP3: A DNA sequence assembly program. X Huang A Madan, Genome Res 1999 9 868 877 10508846 10.1101/gr.9.9.868
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 55
    • 0034061137 scopus 로고    scopus 로고
    • GeneID in Drosophila
    • 10779490. 10.1101/gr.10.4.511
    • GeneID in Drosophila. G Parra E Blanco R Guigo, Genome Res 2000 10 511 515 10779490 10.1101/gr.10.4.511
    • (2000) Genome Res , vol.10 , pp. 511-515
    • Parra, G.1    Blanco, E.2    Guigo, R.3
  • 57
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • 10.1006/jmbi.1997.0951. 9149143
    • Prediction of complete gene structures in human genomic DNA. C Burge S Karlin, J Mol Biol 1997 268 78 94 10.1006/jmbi.1997.0951 9149143
    • (1997) J Mol Biol , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 58
    • 84872273276 scopus 로고    scopus 로고
    • The Institut Pasteur. http://bioweb.pasteur.fr/seqanal/interfaces/genscan
    • The Institut Pasteur
  • 62
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • 7984417. 10.1093/nar/22.22.4673
    • CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. JD Thompson JD Higgins TJ Gibson, Nucleic Acids Res 1994 22 4673 4680 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, J.D.2    Gibson, T.J.3
  • 64
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • 9021275
    • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. N Galtier M Gouy C Gautier, Comput Appl Biosci 1996 12 543 548 9021275
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 67
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • 9254330
    • BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. O Gascuel, Mol Biol Evol 1997 14 685 695 9254330
    • (1997) Mol Biol Evol , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 68
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 10.1080/10635150390235520. 14530136
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 10.1080/10635150390235520 14530136
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 69
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • 1633570
    • The rapid generation of mutation data matrices from protein sequences. DT Jones WR Taylor JM Thornton, Comput Appl Biosci 1992 8 275 282 1633570
    • (1992) Comput Appl Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 70
    • 33645816587 scopus 로고    scopus 로고
    • Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
    • 16563161. 10.1186/1471-2148-6-29
    • Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified. TM Keane CJ Creevey MM Pentony TJ Naughton JO Mclnerney, BMC Evol Biol 2006 6 29 16563161 10.1186/1471-2148-6-29
    • (2006) BMC Evol Biol , vol.6 , pp. 29
    • Keane, T.M.1    Creevey, C.J.2    Pentony, M.M.3    Naughton, T.J.4    McLnerney, J.O.5
  • 71
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • 10.1093/bioinformatics/17.8.754. 11524383
    • MRBAYES: Bayesian inference of phylogenetic trees. JP Huelsenbeck F Ronquist, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 72
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • 10.1093/bioinformatics/btg180. 12912839
    • MrBayes 3: Bayesian phylogenetic inference under mixed models. F Ronquist JP Huelsenbeck, Bioinformatics 2003 19 1572 1574 10.1093/bioinformatics/btg180 12912839
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 74
    • 33644536713 scopus 로고    scopus 로고
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates
    • 10.1038/nature04336. 16495997
    • Tunicates and not cephalochordates are the closest living relatives of vertebrates. F Delsuc H Brinkmann D Chourrout H Philippe, Nature 2006 439 965 968 10.1038/nature04336 16495997
    • (2006) Nature , vol.439 , pp. 965-968
    • Delsuc, F.1    Brinkmann, H.2    Chourrout, D.3    Philippe, H.4


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