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Volumn 12, Issue , 2011, Pages

Predicting functionally important SNP classes based on negative selection

Author keywords

[No Author keywords available]

Indexed keywords

EPIGENETIC MODIFICATION; GENOME-WIDE ASSOCIATION; GENOME-WIDE ASSOCIATION STUDIES; HISTONE METHYLATION; LINKAGE DISEQUILIBRIUM; REGULATORY ELEMENTS; SINGLE NUCLEOTIDE POLYMORPHISMS; TRANSCRIPTION FACTOR BINDING SITES;

EID: 78651473433     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-26     Document Type: Article
Times cited : (8)

References (67)
  • 1
    • 84864160745 scopus 로고    scopus 로고
    • A catalog of published genome-wide association studies
    • A catalog of published genome-wide association studies. , http://www.genome.gov/gwastudies
  • 2
    • 55449120805 scopus 로고    scopus 로고
    • Genetic mapping in human disease
    • New York, NY, 10.1126/science.1156409, 2694957, 18988837
    • Altshuler D, Daly MJ, Lander ES. Genetic mapping in human disease. Science 2008, 322(5903):881-888. New York, NY, 10.1126/science.1156409, 2694957, 18988837.
    • (2008) Science , vol.322 , Issue.5903 , pp. 881-888
    • Altshuler, D.1    Daly, M.J.2    Lander, E.S.3
  • 4
    • 17244379811 scopus 로고    scopus 로고
    • Complement factor H polymorphism and age-related macular degeneration
    • New York, NY, 10.1126/science.1110189, 15761121
    • Edwards AO, Ritter R, Abel KJ, Manning A, Panhuysen C, Farrer LA. Complement factor H polymorphism and age-related macular degeneration. Science 2005, 308(5720):421-424. New York, NY, 10.1126/science.1110189, 15761121.
    • (2005) Science , vol.308 , Issue.5720 , pp. 421-424
    • Edwards, A.O.1    Ritter, R.2    Abel, K.J.3    Manning, A.4    Panhuysen, C.5    Farrer, L.A.6
  • 7
    • 34249888775 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels
    • New York, NY, 10.1126/science.1142358, 17463246
    • Saxena R, Voight BF, Lyssenko V, Burtt NP, de Bakker PI, Chen H, Roix JJ, Kathiresan S, Hirschhorn JN, Daly MJ, et al. Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels. Science 2007, 316(5829):1331-1336. New York, NY, 10.1126/science.1142358, 17463246.
    • (2007) Science , vol.316 , Issue.5829 , pp. 1331-1336
    • Saxena, R.1    Voight, B.F.2    Lyssenko, V.3    Burtt, N.P.4    de Bakker, P.I.5    Chen, H.6    Roix, J.J.7    Kathiresan, S.8    Hirschhorn, J.N.9    Daly, M.J.10
  • 8
    • 34249885875 scopus 로고    scopus 로고
    • A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants
    • New York, NY, 10.1126/science.1142382, 17463248
    • Scott LJ, Mohlke KL, Bonnycastle LL, Willer CJ, Li Y, Duren WL, Erdos MR, Stringham HM, Chines PS, Jackson AU, et al. A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants. Science 2007, 316(5829):1341-1345. New York, NY, 10.1126/science.1142382, 17463248.
    • (2007) Science , vol.316 , Issue.5829 , pp. 1341-1345
    • Scott, L.J.1    Mohlke, K.L.2    Bonnycastle, L.L.3    Willer, C.J.4    Li, Y.5    Duren, W.L.6    Erdos, M.R.7    Stringham, H.M.8    Chines, P.S.9    Jackson, A.U.10
  • 9
    • 34249895023 scopus 로고    scopus 로고
    • Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes
    • New York, NY, 10.1126/science.1142364, 17463249
    • Zeggini E, Weedon MN, Lindgren CM, Frayling TM, Elliott KS, Lango H, Timpson NJ, Perry JR, Rayner NW, Freathy RM, et al. Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes. Science 2007, 316(5829):1336-1341. New York, NY, 10.1126/science.1142364, 17463249.
    • (2007) Science , vol.316 , Issue.5829 , pp. 1336-1341
    • Zeggini, E.1    Weedon, M.N.2    Lindgren, C.M.3    Frayling, T.M.4    Elliott, K.S.5    Lango, H.6    Timpson, N.J.7    Perry, J.R.8    Rayner, N.W.9    Freathy, R.M.10
  • 10
    • 58149357365 scopus 로고    scopus 로고
    • Genome-wide association studies in cancer
    • 10.1093/hmg/ddn287, 18852198
    • Easton DF, Eeles RA. Genome-wide association studies in cancer. Hum Mol Genet 2008, 17(R2):R109-115. 10.1093/hmg/ddn287, 18852198.
    • (2008) Hum Mol Genet , vol.17 , Issue.R2
    • Easton, D.F.1    Eeles, R.A.2
  • 11
    • 58149333555 scopus 로고    scopus 로고
    • Autoimmune diseases: insights from genome-wide association studies
    • 10.1093/hmg/ddn246, 2782355, 18852199
    • Lettre G, Rioux JD. Autoimmune diseases: insights from genome-wide association studies. Human molecular genetics 2008, 17(R2):R116-121. 10.1093/hmg/ddn246, 2782355, 18852199.
    • (2008) Human molecular genetics , vol.17 , Issue.R2
    • Lettre, G.1    Rioux, J.D.2
  • 12
    • 58149328829 scopus 로고    scopus 로고
    • Metabolic and cardiovascular traits: an abundance of recently identified common genetic variants
    • 10.1093/hmg/ddn275, 2570060, 18852197
    • Mohlke KL, Boehnke M, Abecasis GR. Metabolic and cardiovascular traits: an abundance of recently identified common genetic variants. Hum Mol Genet 2008, 17(R2):R102-108. 10.1093/hmg/ddn275, 2570060, 18852197.
    • (2008) Hum Mol Genet , vol.17 , Issue.R2
    • Mohlke, K.L.1    Boehnke, M.2    Abecasis, G.R.3
  • 13
    • 33750211858 scopus 로고    scopus 로고
    • A gene-centric approach to genome-wide association studies
    • 10.1038/nrg1962, 17047687
    • Jorgenson E, Witte JS. A gene-centric approach to genome-wide association studies. Nat Rev Genet 2006, 7(11):885-891. 10.1038/nrg1962, 17047687.
    • (2006) Nat Rev Genet , vol.7 , Issue.11 , pp. 885-891
    • Jorgenson, E.1    Witte, J.S.2
  • 14
    • 20844461337 scopus 로고    scopus 로고
    • LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources
    • 10.1093/bioinformatics/bti442, 15827081
    • Karchin R, Diekhans M, Kelly L, Thomas DJ, Pieper U, Eswar N, Haussler D, Sali A. LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. Bioinformatics 2005, 21(12):2814-2820. 10.1093/bioinformatics/bti442, 15827081.
    • (2005) Bioinformatics , vol.21 , Issue.12 , pp. 2814-2820
    • Karchin, R.1    Diekhans, M.2    Kelly, L.3    Thomas, D.J.4    Pieper, U.5    Eswar, N.6    Haussler, D.7    Sali, A.8
  • 15
    • 21144453885 scopus 로고    scopus 로고
    • Phenotype-genotype correlation in Hirschsprung disease is illuminated by comparative analysis of the RET protein sequence
    • 10.1073/pnas.0503259102, 1157046, 15956201
    • Kashuk CS, Stone EA, Grice EA, Portnoy ME, Green ED, Sidow A, Chakravarti A, McCallion AS. Phenotype-genotype correlation in Hirschsprung disease is illuminated by comparative analysis of the RET protein sequence. Proc Natl Acad Sci USA 2005, 102(25):8949-8954. 10.1073/pnas.0503259102, 1157046, 15956201.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.25 , pp. 8949-8954
    • Kashuk, C.S.1    Stone, E.A.2    Grice, E.A.3    Portnoy, M.E.4    Green, E.D.5    Sidow, A.6    Chakravarti, A.7    McCallion, A.S.8
  • 16
    • 0043122919 scopus 로고    scopus 로고
    • SIFT: Predicting amino acid changes that affect protein function
    • 10.1093/nar/gkg509, 168916, 12824425
    • Ng PC, Henikoff S. SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res 2003, 31(13):3812-3814. 10.1093/nar/gkg509, 168916, 12824425.
    • (2003) Nucleic Acids Res , vol.31 , Issue.13 , pp. 3812-3814
    • Ng, P.C.1    Henikoff, S.2
  • 17
    • 33750353461 scopus 로고    scopus 로고
    • Predicting the effects of amino acid substitutions on protein function
    • 10.1146/annurev.genom.7.080505.115630, 16824020
    • Ng PC, Henikoff S. Predicting the effects of amino acid substitutions on protein function. Annu Rev Genomics Hum Genet 2006, 7:61-80. 10.1146/annurev.genom.7.080505.115630, 16824020.
    • (2006) Annu Rev Genomics Hum Genet , vol.7 , pp. 61-80
    • Ng, P.C.1    Henikoff, S.2
  • 19
    • 33645764714 scopus 로고    scopus 로고
    • SNPs3D: candidate gene and SNP selection for association studies
    • 10.1186/1471-2105-7-166, 1435944, 16551372
    • Yue P, Melamud E, Moult J. SNPs3D: candidate gene and SNP selection for association studies. BMC Bioinformatics 2006, 7:166. 10.1186/1471-2105-7-166, 1435944, 16551372.
    • (2006) BMC Bioinformatics , vol.7 , pp. 166
    • Yue, P.1    Melamud, E.2    Moult, J.3
  • 29
    • 33751520430 scopus 로고    scopus 로고
    • Natural selection on human microRNA binding sites inferred from SNP data
    • 10.1038/ng1910, 17072316
    • Chen K, Rajewsky N. Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 2006, 38(12):1452-1456. 10.1038/ng1910, 17072316.
    • (2006) Nat Genet , vol.38 , Issue.12 , pp. 1452-1456
    • Chen, K.1    Rajewsky, N.2
  • 30
    • 19344367734 scopus 로고    scopus 로고
    • Single nucleotide polymorphism-based validation of exonic splicing enhancers
    • 10.1371/journal.pbio.0020268, 514884, 15340491
    • Fairbrother WG, Holste D, Burge CB, Sharp PA. Single nucleotide polymorphism-based validation of exonic splicing enhancers. PLoS Biol 2004, 2(9):E268. 10.1371/journal.pbio.0020268, 514884, 15340491.
    • (2004) PLoS Biol , vol.2 , Issue.9
    • Fairbrother, W.G.1    Holste, D.2    Burge, C.B.3    Sharp, P.A.4
  • 31
    • 52649095500 scopus 로고    scopus 로고
    • Genome-wide analysis of natural selection on human cis-elements
    • 10.1371/journal.pone.0003137, 2522239, 18781197
    • Sethupathy P, Giang H, Plotkin JB, Hannenhalli S. Genome-wide analysis of natural selection on human cis-elements. PloS one 2008, 3(9):e3137. 10.1371/journal.pone.0003137, 2522239, 18781197.
    • (2008) PloS one , vol.3 , Issue.9
    • Sethupathy, P.1    Giang, H.2    Plotkin, J.B.3    Hannenhalli, S.4
  • 32
    • 74549137246 scopus 로고    scopus 로고
    • Evidence of uneven selective pressure on different subsets of the conserved human genome; implications for the significance of intronic and intergenic DNA
    • 10.1186/1471-2164-10-614, 2807880, 20015390
    • Davidson S, Starkey A, MacKenzie A. Evidence of uneven selective pressure on different subsets of the conserved human genome; implications for the significance of intronic and intergenic DNA. BMC genomics 2009, 10:614. 10.1186/1471-2164-10-614, 2807880, 20015390.
    • (2009) BMC genomics , vol.10 , pp. 614
    • Davidson, S.1    Starkey, A.2    MacKenzie, A.3
  • 33
    • 77649267541 scopus 로고    scopus 로고
    • Human genetic variation recognizes functional elements in noncoding sequence
    • 10.1101/gr.094151.109, 2840987, 20032171
    • Lomelin D, Jorgenson E, Risch N. Human genetic variation recognizes functional elements in noncoding sequence. Genome research 2010, 20(3):311-319. 10.1101/gr.094151.109, 2840987, 20032171.
    • (2010) Genome research , vol.20 , Issue.3 , pp. 311-319
    • Lomelin, D.1    Jorgenson, E.2    Risch, N.3
  • 34
    • 34147151710 scopus 로고    scopus 로고
    • The strength of selection on ultraconserved elements in the human genome
    • 10.1086/513149, 1852725, 17357075
    • Chen CT, Wang JC, Cohen BA. The strength of selection on ultraconserved elements in the human genome. Am J Hum Genet 2007, 80(4):692-704. 10.1086/513149, 1852725, 17357075.
    • (2007) Am J Hum Genet , vol.80 , Issue.4 , pp. 692-704
    • Chen, C.T.1    Wang, J.C.2    Cohen, B.A.3
  • 36
    • 34548131708 scopus 로고    scopus 로고
    • Human genome ultraconserved elements are ultraselected
    • New York, NY, 10.1126/science.1142430, 17702936
    • Katzman S, Kern AD, Bejerano G, Fewell G, Fulton L, Wilson RK, Salama SR, Haussler D. Human genome ultraconserved elements are ultraselected. Science 2007, 317(5840):915. New York, NY, 10.1126/science.1142430, 17702936.
    • (2007) Science , vol.317 , Issue.5840 , pp. 915
    • Katzman, S.1    Kern, A.D.2    Bejerano, G.3    Fewell, G.4    Fulton, L.5    Wilson, R.K.6    Salama, S.R.7    Haussler, D.8
  • 37
    • 77649255315 scopus 로고    scopus 로고
    • Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
    • 10.1101/gr.102210.109, 2840986, 20067941
    • Goode DL, Cooper GM, Schmutz J, Dickson M, Gonzales E, Tsai M, Karra K, Davydov E, Batzoglou S, Myers RM, et al. Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes. Genome research 2010, 20(3):301-310. 10.1101/gr.102210.109, 2840986, 20067941.
    • (2010) Genome research , vol.20 , Issue.3 , pp. 301-310
    • Goode, D.L.1    Cooper, G.M.2    Schmutz, J.3    Dickson, M.4    Gonzales, E.5    Tsai, M.6    Karra, K.7    Davydov, E.8    Batzoglou, S.9    Myers, R.M.10
  • 38
    • 0345447463 scopus 로고    scopus 로고
    • Mutation rate variation in the mammalian genome
    • 10.1016/j.gde.2003.10.008, 14638315
    • Ellegren H, Smith NG, Webster MT. Mutation rate variation in the mammalian genome. Curr Opin Genet Dev 2003, 13(6):562-568. 10.1016/j.gde.2003.10.008, 14638315.
    • (2003) Curr Opin Genet Dev , vol.13 , Issue.6 , pp. 562-568
    • Ellegren, H.1    Smith, N.G.2    Webster, M.T.3
  • 40
    • 18544404720 scopus 로고    scopus 로고
    • Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution
    • 10.1101/gr.844103, 430971, 12529302
    • Hardison RC, Roskin KM, Yang S, Diekhans M, Kent WJ, Weber R, Elnitski L, Li J, O'Connor M, Kolbe D, et al. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Res 2003, 13(1):13-26. 10.1101/gr.844103, 430971, 12529302.
    • (2003) Genome Res , vol.13 , Issue.1 , pp. 13-26
    • Hardison, R.C.1    Roskin, K.M.2    Yang, S.3    Diekhans, M.4    Kent, W.J.5    Weber, R.6    Elnitski, L.7    Li, J.8    O'Connor, M.9    Kolbe, D.10
  • 42
    • 1842768391 scopus 로고    scopus 로고
    • Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes
    • 10.1101/gr.1984404, 383295, 15059992
    • Yang S, Smit AF, Schwartz S, Chiaromonte F, Roskin KM, Haussler D, Miller W, Hardison RC. Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes. Genome Res 2004, 14(4):517-527. 10.1101/gr.1984404, 383295, 15059992.
    • (2004) Genome Res , vol.14 , Issue.4 , pp. 517-527
    • Yang, S.1    Smit, A.F.2    Schwartz, S.3    Chiaromonte, F.4    Roskin, K.M.5    Haussler, D.6    Miller, W.7    Hardison, R.C.8
  • 43
    • 13844313862 scopus 로고    scopus 로고
    • Whole-genome patterns of common DNA variation in three human populations
    • New York, NY, 10.1126/science.1105436, 15718463
    • Hinds DA, Stuve LL, Nilsen GB, Halperin E, Eskin E, Ballinger DG, Frazer KA, Cox DR. Whole-genome patterns of common DNA variation in three human populations. Science 2005, 307(5712):1072-1079. New York, NY, 10.1126/science.1105436, 15718463.
    • (2005) Science , vol.307 , Issue.5712 , pp. 1072-1079
    • Hinds, D.A.1    Stuve, L.L.2    Nilsen, G.B.3    Halperin, E.4    Eskin, E.5    Ballinger, D.G.6    Frazer, K.A.7    Cox, D.R.8
  • 44
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • 10.1016/j.cell.2007.05.009, 17512414
    • Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129(4):823-837. 10.1016/j.cell.2007.05.009, 17512414.
    • (2007) Cell , vol.129 , Issue.4 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 45
    • 38649099445 scopus 로고    scopus 로고
    • High-resolution mapping and characterization of open chromatin across the genome
    • 10.1016/j.cell.2007.12.014, 2669738, 18243105
    • Boyle AP, Davis S, Shulha HP, Meltzer P, Margulies EH, Weng Z, Furey TS, Crawford GE. High-resolution mapping and characterization of open chromatin across the genome. Cell 2008, 132(2):311-322. 10.1016/j.cell.2007.12.014, 2669738, 18243105.
    • (2008) Cell , vol.132 , Issue.2 , pp. 311-322
    • Boyle, A.P.1    Davis, S.2    Shulha, H.P.3    Meltzer, P.4    Margulies, E.H.5    Weng, Z.6    Furey, T.S.7    Crawford, G.E.8
  • 46
    • 20444380510 scopus 로고    scopus 로고
    • Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes
    • 10.1074/jbc.M500796200, 15760899
    • Bannister AJ, Schneider R, Myers FA, Thorne AW, Crane-Robinson C, Kouzarides T. Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes. J Biol Chem 2005, 280(18):17732-17736. 10.1074/jbc.M500796200, 15760899.
    • (2005) J Biol Chem , vol.280 , Issue.18 , pp. 17732-17736
    • Bannister, A.J.1    Schneider, R.2    Myers, F.A.3    Thorne, A.W.4    Crane-Robinson, C.5    Kouzarides, T.6
  • 50
    • 38549124383 scopus 로고    scopus 로고
    • The microRNA.org resource: targets and expression
    • Database issue, 2238905, 18158296
    • Betel D, Wilson M, Gabow A, Marks DS, Sander C. The microRNA.org resource: targets and expression. Nucleic Acids Res 2008, 36(Database issue):D149-153. 2238905, 18158296.
    • (2008) Nucleic Acids Res , vol.36
    • Betel, D.1    Wilson, M.2    Gabow, A.3    Marks, D.S.4    Sander, C.5
  • 51
    • 0031480089 scopus 로고    scopus 로고
    • Multiple hypothesis testing with weights
    • Benjamini Y, Hochberg Y. Multiple hypothesis testing with weights. Scand J Statist 1997, 24:407-418.
    • (1997) Scand J Statist , vol.24 , pp. 407-418
    • Benjamini, Y.1    Hochberg, Y.2
  • 52
    • 33750168129 scopus 로고    scopus 로고
    • False discovery control with p-value weighting
    • Genovese CR, Roeder K, Wasserman L. False discovery control with p-value weighting. Biometrika 2006, 93(3):509-524.
    • (2006) Biometrika , vol.93 , Issue.3 , pp. 509-524
    • Genovese, C.R.1    Roeder, K.2    Wasserman, L.3
  • 53
    • 31544449191 scopus 로고    scopus 로고
    • Using linkage genome scans to improve power of association in genome scans
    • 10.1086/500026, 1380233, 16400608
    • Roeder K, Bacanu SA, Wasserman L, Devlin B. Using linkage genome scans to improve power of association in genome scans. Am J Hum Genet 2006, 78(2):243-252. 10.1086/500026, 1380233, 16400608.
    • (2006) Am J Hum Genet , vol.78 , Issue.2 , pp. 243-252
    • Roeder, K.1    Bacanu, S.A.2    Wasserman, L.3    Devlin, B.4
  • 54
    • 34547788766 scopus 로고    scopus 로고
    • Enriching the analysis of genomewide association studies with hierarchical modeling
    • 10.1086/519794, 1950795, 17668389
    • Chen GK, Witte JS. Enriching the analysis of genomewide association studies with hierarchical modeling. American journal of human genetics 2007, 81(2):397-404. 10.1086/519794, 1950795, 17668389.
    • (2007) American journal of human genetics , vol.81 , Issue.2 , pp. 397-404
    • Chen, G.K.1    Witte, J.S.2
  • 55
    • 38049023107 scopus 로고    scopus 로고
    • Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation
    • 10.1002/gepi.20248, 17654612
    • Lewinger JP, Conti DV, Baurley JW, Triche TJ, Thomas DC. Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation. Genet Epidemiol 2007, 31(8):871-882. 10.1002/gepi.20248, 17654612.
    • (2007) Genet Epidemiol , vol.31 , Issue.8 , pp. 871-882
    • Lewinger, J.P.1    Conti, D.V.2    Baurley, J.W.3    Triche, T.J.4    Thomas, D.C.5
  • 56
    • 36248977635 scopus 로고    scopus 로고
    • Improving power in genome-wide association studies: weights tip the scale
    • 10.1002/gepi.20237, 17549760
    • Roeder K, Devlin B, Wasserman L. Improving power in genome-wide association studies: weights tip the scale. Genetic epidemiology 2007, 31(7):741-747. 10.1002/gepi.20237, 17549760.
    • (2007) Genetic epidemiology , vol.31 , Issue.7 , pp. 741-747
    • Roeder, K.1    Devlin, B.2    Wasserman, L.3
  • 57
    • 53649101617 scopus 로고    scopus 로고
    • What would you do if you could sequence everything?
    • 10.1038/nbt1494, 18846086
    • Kahvejian A, Quackenbush J, Thompson JF. What would you do if you could sequence everything?. Nat Biotechnol 2008, 26(10):1125-1133. 10.1038/nbt1494, 18846086.
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1125-1133
    • Kahvejian, A.1    Quackenbush, J.2    Thompson, J.F.3
  • 58
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • 10.1038/nbt1486, 18846087
    • Shendure J, Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008, 26(10):1135-1145. 10.1038/nbt1486, 18846087.
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 59
    • 84870440303 scopus 로고    scopus 로고
    • 1000 Genomes
    • 1000 Genomes. , http://www.1000genomes.org/
  • 62
    • 22244452677 scopus 로고    scopus 로고
    • Distribution and intensity of constraint in mammalian genomic sequence
    • 10.1101/gr.3577405, 1172034, 15965027
    • Cooper GM, Stone EA, Asimenos G, Green ED, Batzoglou S, Sidow A. Distribution and intensity of constraint in mammalian genomic sequence. Genome Res 2005, 15(7):901-913. 10.1101/gr.3577405, 1172034, 15965027.
    • (2005) Genome Res , vol.15 , Issue.7 , pp. 901-913
    • Cooper, G.M.1    Stone, E.A.2    Asimenos, G.3    Green, E.D.4    Batzoglou, S.5    Sidow, A.6
  • 63
    • 33947201809 scopus 로고    scopus 로고
    • Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
    • 10.1016/j.cell.2006.12.048, 2572726, 17382889
    • Kim TH, Abdullaev ZK, Smith AD, Ching KA, Loukinov DI, Green RD, Zhang MQ, Lobanenkov VV, Ren B. Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 2007, 128(6):1231-1245. 10.1016/j.cell.2006.12.048, 2572726, 17382889.
    • (2007) Cell , vol.128 , Issue.6 , pp. 1231-1245
    • Kim, T.H.1    Abdullaev, Z.K.2    Smith, A.D.3    Ching, K.A.4    Loukinov, D.I.5    Green, R.D.6    Zhang, M.Q.7    Lobanenkov, V.V.8    Ren, B.9
  • 64
    • 33644859558 scopus 로고    scopus 로고
    • CisRED: a database system for genome-scale computational discovery of regulatory elements
    • Database issue, 10.1093/nar/gkj075, 1347438, 16381958
    • Robertson G, Bilenky M, Lin K, He A, Yuen W, Dagpinar M, Varhol R, Teague K, Griffith OL, Zhang X, et al. cisRED: a database system for genome-scale computational discovery of regulatory elements. Nucleic Acids Res 2006, 34(Database issue):D68-73. 10.1093/nar/gkj075, 1347438, 16381958.
    • (2006) Nucleic Acids Res , vol.34
    • Robertson, G.1    Bilenky, M.2    Lin, K.3    He, A.4    Yuen, W.5    Dagpinar, M.6    Varhol, R.7    Teague, K.8    Griffith, O.L.9    Zhang, X.10
  • 65
    • 0032953881 scopus 로고    scopus 로고
    • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination
    • 1460457, 9872962
    • Akashi H. Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination. Genetics 1999, 151(1):221-238. 1460457, 9872962.
    • (1999) Genetics , vol.151 , Issue.1 , pp. 221-238
    • Akashi, H.1
  • 66
    • 54949108148 scopus 로고    scopus 로고
    • Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs
    • 10.1101/gr.076554.108, 2577869, 18849524
    • Paten B, Herrero J, Beal K, Fitzgerald S, Birney E. Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. Genome research 2008, 18(11):1814-1828. 10.1101/gr.076554.108, 2577869, 18849524.
    • (2008) Genome research , vol.18 , Issue.11 , pp. 1814-1828
    • Paten, B.1    Herrero, J.2    Beal, K.3    Fitzgerald, S.4    Birney, E.5
  • 67
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J Roy Statist Soc B 1995, 57(1):289-300.
    • (1995) J Roy Statist Soc B , vol.57 , Issue.1 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2


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