The 3′ ends of tRNA-derived short interspersed repetitive elements are derived from the 3′ ends of long interspersed repetitive elements

Molecular and Cellular Biology

Volumn 16, Issue 7, 1996, Pages 3756-3764

  Ohshima, Kazuhiko ^a   Hamada, Mitsuhiro ^a   Terai, Yohey ^a   Okada, Norihiro ^a  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AVES; NICOTIANA TABACUM; PLEURODIRA; REPTILIA; SALMONIDAE; TESTUDINES;

COMPLEMENTARY DNA; PRIMER RNA; RNA DIRECTED DNA POLYMERASE; TRANSFER RNA;

ARTICLE; DNA RECOMBINATION; EVOLUTION; GENE AMPLIFICATION; GENOME; HUMAN; LONG INTERSPERSED REPEAT; LONG TERMINAL REPEAT; NONHUMAN; PRIORITY JOURNAL; RETROPOSON; RETROVIRUS; SALMON; SHORT INTERSPERSED REPEAT; TOBACCO; TURTLE;

ALLIGATORS AND CROCODILES; ANGUILLA; ANIMALS; BASE SEQUENCE; CHICKENS; CONSENSUS SEQUENCE; DNA PRIMERS; DNA, COMPLEMENTARY; EVOLUTION; GENOME; HUMANS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; REPETITIVE SEQUENCES, NUCLEIC ACID; RETROELEMENTS; RNA, TRANSFER; SEQUENCE HOMOLOGY, NUCLEIC ACID; TURTLES;

EID: 0029927086     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.7.3756     Document Type: Article

References (40)

1. Blin, N., and D. W. Stafford. 1976. A general method for isolation of high molecular weight DNA from eukaryotes. Nucleic Acids Res. 3:2303-2308.
2. Burch, J. B. E., D. L. Davis, and N. B. Hass. 1993. Chicken repeat 1 elements contain a pol-like open reading frame and belong to the non-long terminal repeat class of retrotransposons. Proc. Natl. Acad. Sci. USA 90:8199-8203.
3. Doolittle, R. F., D.-F. Feng, M. S. Johnson, and M. A. McClure. 1989. Origins and evolutionary relationships of retroviruses. O. Rev. Biol. 64:1-30.
4. Eickbush, T. H. 1992. Transposing without ends: the non-LTR retrotransposable elements. New Biol. 4:430-440.
5. Eickbush, T. H. 1994. Origin and evolutionary relationships of retroelements. p. 121-157. In S. S. Morse (ed.). The evolutionary biology of viruses. Raven Press, New York.
6. Endoh, H., S. Nagahashi, and N. Okada. 1990. A highly repetitive and transcribable sequence in the tortoise genome is probably a retroposon. Eur. J. Biochem. 189:25-31.
7. Endoh, H., and N. Okada. 1986. Total DNA transcription in vitro: a procedure to detect highly repetitive and transcribable sequences with tRNA-like structures. Proc. Natl. Acad. Sci. USA 83:251-255.
8. Fanning, T. G., and M. F. Singer. 1987. LINE-1: a mammalian transposable element. Biochim. Biophys. Acta 910:203-212.
9. Gaffney, E. S., and P. A. Meylan. 1988. A phytogeny of turtles, p. 157-219. In M. J. Benton (ed.). The phylogeny and classification of the tetrapods, vol. 1. Clarendon Press, Oxford.
10. Hedges, S. B. 1994. Molecular evidence for the origin of birds. Proc. Natl. Acad. Sci. USA 91:2621-2624.
11. Kido, Y., M. Aono, T. Yamaki, K. Matsumoto, S. Murata, M. Saneyoshi, and N. Okada. 1991. Shaping and reshaping of salmonid genomes by amplification of tRNA-derived retroposons during evolution. Proc. Natl. Acad. Sci. USA 88:2326-2330.
12. Kido, Y., M. Himberg, N. Takasaki, and N. Okada. 1994. Amplification of distinct subfamilies of short interspersed elements during evolution of the salmonidae. J. Mol. Biol. 241:633-644.
13. Kido, Y., M. Saitoh, S. Murata, and N. Okada. 1995. Evolution of the active sequences of the HpaI short interspersed elements. J. Mol. Evol. 41:986-995.
14. Luan, D. D., and T. H. Eickbush. 1995. RNA template requirements for target DNA-printed reverse transcription by the R2 retrotransposable element. Mol. Cell. Biol. 15:3882-3891.
15. Luan, D. D., M. H. Korman, J. L. Jakubczak, and T. H. Eickbush. 1993. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72:595-605.
16. Martignetti, J. A., and J. Brosius. 1995. BCl RNA: transcriptional analysis of a neural cell-specific RNA polymerase III transcript. Mol. Cell. Biol. 15:1642-1650.
17. Matsumoto, K., T. Takii, and N. Okada. 1989. Characterization of a new termination signal for RNA polymerase III responsible for generation of a discrete-sized RNA transcribed from salmon total genomic DNA in a HeLa cell extract. J. Biol. Chem. 264:1124-1131.
18. Mizrokhi, L. J., S. G. Georgieva, and Y. V. Ilyin. 1988. jockey, a mobile Drosophila element similar to mammalian LINEs, is transcribed from the internal promoter by RNA polymerase II. Cell 54:685-691.
19. Ohshima, K., R. Koishi, M. Matsuo, and N. Okada. 1993. Several short interspersed repetitive elements (SINEs) in distant species may have originated from a common ancestral retrovirus: characterization of a squid SINE and a possible mechanism for generation of tRNA-derived retroposons. Proc. Natl. Acad. Sci. USA 90:6260-6264.
20. Okada, N. 1991. SINEs. Curr. Opin. Genet. Dev. 1:498-504.
21. Okada, N. 1991. SINEs: short interspersed repeated elements of the eukaryotic genome. Trends. Ecol. Evol. 6:358-361.
22. Okada, N., and K. Ohshima. 1995. Evolution of tRNA-derived SINEs, p. 61-79. In R. J. Maraia (ed.), The impact of short interspersed elements (SINEs) on the host genome. R. G. Landes Company. Austin. Tex.
23. Rogers, J. H. 1985. The structure and evolution of retroposons. Int. Rev. Cytol. 93:231-279.
24. Rougier, G. W., M. S. de la Fuente, and A. B. Arcucci. 1995. Late Triassic turtles from South America. Science 268:855-858.
25. Saiki, R. K., D. H. Gelfand, S. Stoffel, S. J. Scharf, R. Higuchi, G. T. Horn, K. B. Mullis. and H. A. Erlich. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
26. Sanger, F., S. Nicklen, and A. R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74:5463-5467.
27. Silva, R., and J. B. E. Burch. 1989. Evidence that chicken CR1 elements represent a novel family of retroposons. Mol. Cell. Biol. 9:3563-3566.
28. Singer, M., and P. Berg. 1991. Genes & genomes. University Science Books, Mill Valley, Calif.
29. Singer, M. F. 1982. SINEs and LINEs: highly repeated short and long interspersed sequences in mammalian genomes. Cell 28:433-434.
30. Stumph, W. E., P. Kristo, M.-J. Tsai, and B. W. O'Malley. 1981. A chicken middle-repetitive DNA sequence which shares homology with mammalian ubiquitous repeats. Nucleic Acids Res. 9:5383-5397.
31. Swergold, G. D. 1990. Identification, characterization, and cell specificity of a human LINE-1 promoter. Mol. Cell. Biol. 10:6718-6729.
32. Ullu, E., and C. Tschudi. 1984. Alu sequences are processed 7SL RNA genes. Nature (London) 312:171-172.
33. Vandergon, T. L., and M. Reitman. 1994. Evolution of chicken repeat 1 (CR1) elements: evidence for ancient subfamilies and multiple progenitors. Mol. Biol. Evol. 11:886-898.
34. Wahle, E., and W. Keller. 1992. The biochemistry of 3′-end cleavage and polyadenylation of messenger RNA precursors. Annu. Rev. Biochem. 61: 419-440.
35. Weiner, A. M. 1980. An abundant cytoplasmic 7S RNA is complementary to the dominant interspersed middle repetitive DNA sequence family in the human genome. Cell 22:209-218.
36. Weiner, A. M., P. L. Deininger, and A. Efstratiadis. 1986. Nonviral retroposons: genes, pseudogenes, and transposable elements generated by the reverse flow of genetic information. Annu. Rev. Biochem. 55:631-661.
37. Winkfein, R. J., R. D. Moir, S. A. Krawetz, J. Blanco, J. C. States, and G. H. Dixon. 1988. A new family of repetitive, retroposon-like sequences in the genome of the rainbow trout. Eur. J. Biochem. 176:255-264.
38. Xiong, Y., and T. H. Eickbush. 1990. Origin and evolution of retroelements based upon their reverse transcriptases sequences, EMBO J. 9:3353-3362.
39. Yoshioka, Y., S. Matsumoto, S. Kojima, K. Ohshima, N. Okada, and Y. Machida. 1993. Molecular characterization of a short interspersed repetitive element from tobacco that exhibits sequence homology to specific tRNAs. Proc. Natl. Acad. Sci. USA 90:6562-6566.
40. Zimmerly, S., H. Guo, P. S. Perlman, and A. M. Lambowitz. 1995. Group II intron mobility occurs by target DNA-primed reverse transcription. Cell 82:545-554.