메뉴 건너뛰기




Volumn 31, Issue 15, 2003, Pages 4582-4596

The ERV-9 LTR enhancer is not blocked by the HS5 insulator and synthesizes through the HS5 site non-coding, long RNAs that regulate LTR enhancer function

Author keywords

[No Author keywords available]

Indexed keywords

BETA GLOBIN; GREEN FLUORESCENT PROTEIN; MESSENGER RNA; RNA; DEOXYRIBONUCLEASE I; GLOBIN; PHOTOPROTEIN; UNTRANSLATED RNA;

EID: 0042161841     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg646     Document Type: Article
Times cited : (19)

References (55)
  • 1
    • 0000225930 scopus 로고
    • Endogenous human retroviruses
    • Levy,J. (ed.), Plenum Press, New York, NY
    • Wilkison,D., Mager,D. and Leong,J. (1994) Endogenous human retroviruses. In Levy,J. (ed.), The Retroviridae. Plenum Press, New York, NY, Vol. 3, pp. 465-535.
    • (1994) The Retroviridae , vol.3 , pp. 465-535
    • Wilkison, D.1    Mager, D.2    Leong, J.3
  • 2
    • 0030479536 scopus 로고    scopus 로고
    • The origin of interspersed repeats in the human genome
    • Smit,A.F. (1996) The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev., 6, 743-748.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 743-748
    • Smit, A.F.1
  • 3
    • 0029938821 scopus 로고    scopus 로고
    • The viruses in all of us: Characteristics and biological significance of human endogenous retrovirus sequences
    • Lower,R., Lower,J. and Kurth,R. (1996) The viruses in all of us: characteristics and biological significance of human endogenous retrovirus sequences. Proc. Natl Acad. Sci. USA, 93, 5177-5184.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 5177-5184
    • Lower, R.1    Lower, J.2    Kurth, R.3
  • 5
    • 0019838078 scopus 로고
    • Structure, variation and synthesis of retrovirus long terminal repeat
    • Temin,H.M. (1981) Structure, variation and synthesis of retrovirus long terminal repeat. Cell, 27, 1-3.
    • (1981) Cell , vol.27 , pp. 1-3
    • Temin, H.M.1
  • 6
    • 0004131381 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Coffin,J., Hughes,S. and Varmus,H. (1997) Retroviruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1997) Retroviruses
    • Coffin, J.1    Hughes, S.2    Varmus, H.3
  • 7
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium
    • International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 8
    • 0018894384 scopus 로고
    • Selfish genes, the phenotype paradigm and genome evolution
    • Doolittle,W.F. and Sapienza,C. (1980) Selfish genes, the phenotype paradigm and genome evolution. Nature, 284, 601-603.
    • (1980) Nature , vol.284 , pp. 601-603
    • Doolittle, W.F.1    Sapienza, C.2
  • 9
    • 0035910527 scopus 로고    scopus 로고
    • Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans
    • Medstrand,P., Landry,J.R. and Mager,D.L. (2001) Long terminal repeats are used as alternative promoters for the endothelin B receptor and apolipoprotein C-I genes in humans. J. Biol. Chem., 276, 1896-1903.
    • (2001) J. Biol. Chem. , vol.276 , pp. 1896-1903
    • Medstrand, P.1    Landry, J.R.2    Mager, D.L.3
  • 10
    • 0032484602 scopus 로고    scopus 로고
    • Characterization and genomic mapping of chimeric ERV9 endogenous retroviruses-host gene transcripts
    • Strazzullo,M., Parisi,T., Di Cristofano,A., Rocchi,M. and La Mantia,G. (1998) Characterization and genomic mapping of chimeric ERV9 endogenous retroviruses-host gene transcripts. Gene, 5, 77-83.
    • (1998) Gene , vol.5 , pp. 77-83
    • Strazzullo, M.1    Parisi, T.2    Di Cristofano, A.3    Rocchi, M.4    La Mantia, G.5
  • 11
    • 0021126293 scopus 로고
    • Distinctive sequence organization and functional programming of an Alu repeat promoter
    • Perez-Stable,C., Ayres,T.M. and Shen,C.J. (1984) Distinctive sequence organization and functional programming of an Alu repeat promoter. Proc. Natl Acad. Sci. USA, 81, 5291-5295.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 5291-5295
    • Perez-Stable, C.1    Ayres, T.M.2    Shen, C.J.3
  • 12
    • 0029685023 scopus 로고    scopus 로고
    • Alu: Structure, origin, evolution, significance and function of one tenth of human DNA
    • Schmid,C.W. (1996) Alu: structure, origin, evolution, significance and function of one tenth of human DNA. Prog. Nucleic Acid Res. Mol. Biol., 53, 283-319.
    • (1996) Prog. Nucleic Acid Res. Mol. Biol. , vol.53 , pp. 283-319
    • Schmid, C.W.1
  • 13
    • 0029796901 scopus 로고    scopus 로고
    • DNA sequence insertion and evolutionary variation in gene regulation
    • Britten,R.J. (1996) DNA sequence insertion and evolutionary variation in gene regulation. Proc. Natl Acad. Sci. USA, 93, 9374-9377.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9374-9377
    • Britten, R.J.1
  • 14
    • 0033525586 scopus 로고    scopus 로고
    • Exon shuffling by L1 retrotransposition
    • Moran,J.V., DeBerardinis,R.J. and Kazazian,H.H. (1999) Exon shuffling by L1 retrotransposition. Science, 283, 1530-1533.
    • (1999) Science , vol.283 , pp. 1530-1533
    • Moran, J.V.1    DeBerardinis, R.J.2    Kazazian, H.H.3
  • 15
    • 0022491708 scopus 로고
    • A gene deletion ending within a complex array of repeated sequences 3′ to the human beta-globin gene cluster
    • Henthorn,P.S., Mager,D., Huisman,D. and Smithies,O. (1986) A gene deletion ending within a complex array of repeated sequences 3′ to the human beta-globin gene cluster. Proc. Natl Acad. Sci. USA, 83, 5194-5198.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 5194-5198
    • Henthorn, P.S.1    Mager, D.2    Huisman, D.3    Smithies, O.4
  • 16
    • 0025896526 scopus 로고
    • Identification and characterization of novel human endogenous retroviral sequences prefentially expressed in undifferentiated embryonal carcinoma cells
    • La Mantia,G., Maglione,D., Pengue,G., Di Cristofano,A., Simeone,A., Lanfrancone,L. and Lania,L. (1991) Identification and characterization of novel human endogenous retroviral sequences prefentially expressed in undifferentiated embryonal carcinoma cells. Nucleic Acids Res., 19, 1513-1520.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1513-1520
    • La Mantia, G.1    Maglione, D.2    Pengue, G.3    Di Cristofano, A.4    Simeone, A.5    Lanfrancone, L.6    Lania, L.7
  • 17
    • 0026511030 scopus 로고
    • Distribution of moderately repetitive sequences pTR5 and LF1 in Xq24-q28 human DNA and their use in assembling YAC contigs
    • Zucchi,I. and Schlessinger,D. (1992) Distribution of moderately repetitive sequences pTR5 and LF1 in Xq24-q28 human DNA and their use in assembling YAC contigs. Genomics, 12, 264-275.
    • (1992) Genomics , vol.12 , pp. 264-275
    • Zucchi, I.1    Schlessinger, D.2
  • 18
    • 0028880713 scopus 로고
    • Mobilization of an ERV9 human endogenous retroviral element during primate evolution
    • Di Cristofano,A., Strazzullo,M., Parisi,T. and LaMantia,G. (1995) Mobilization of an ERV9 human endogenous retroviral element during primate evolution. Virology, 213, 271-275.
    • (1995) Virology , vol.213 , pp. 271-275
    • Di Cristofano, A.1    Strazzullo, M.2    Parisi, T.3    LaMantia, G.4
  • 19
    • 0032535356 scopus 로고    scopus 로고
    • A long terminal repeat of the human endogenous retrovirus ERV-9 is located in the 5′ boundary area of the human β-globin locus control region
    • Long,Q., Bengra,C., Li,C., Kutlar,F. and Tuan,D. (1998) A long terminal repeat of the human endogenous retrovirus ERV-9 is located in the 5′ boundary area of the human β-globin locus control region. Genomics, 54, 542-555.
    • (1998) Genomics , vol.54 , pp. 542-555
    • Long, Q.1    Bengra, C.2    Li, C.3    Kutlar, F.4    Tuan, D.5
  • 20
    • 0026691333 scopus 로고
    • GATA-binding transcription factors in hematopoietic cells
    • Orkin,S.H. (1992) GATA-binding transcription factors in hematopoietic cells. Blood, 80, 575-581.
    • (1992) Blood , vol.80 , pp. 575-581
    • Orkin, S.H.1
  • 21
    • 0030854907 scopus 로고    scopus 로고
    • Transcription factors, normal myeloid development and leukemia
    • Tenen,D.G., Hromas,R., Licht,J. and Zhang,D. (1997) Transcription factors, normal myeloid development and leukemia. Blood, 90, 489-519.
    • (1997) Blood , vol.90 , pp. 489-519
    • Tenen, D.G.1    Hromas, R.2    Licht, J.3    Zhang, D.4
  • 22
    • 0027211845 scopus 로고
    • A novel, erythroid cell-specific murine transcription factor that binds to the CACCC element and is related to the Kruppel family of nuclear proteins
    • Miller,I. and Bieker,J. (1993) A novel, erythroid cell-specific murine transcription factor that binds to the CACCC element and is related to the Kruppel family of nuclear proteins. Mol. Cell. Biol., 13, 2776-2786.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 2776-2786
    • Miller, I.1    Bieker, J.2
  • 23
    • 0344272073 scopus 로고
    • The "β-like-globin" gene domain in human erythroid cells
    • Tuan,D., Solomon,W., Li,Q. and London,I. (1985) The "β-like-globin" gene domain in human erythroid cells. Proc. Natl Acad. Sci. USA, 82, 6384-6388.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 6384-6388
    • Tuan, D.1    Solomon, W.2    Li, Q.3    London, I.4
  • 24
    • 0023550898 scopus 로고
    • Evidence for a locus activation region: The formation of developmentally stable hypersensitive sites in globin-expressing hybrids
    • Forrester,W., Takegawa,S. Papayannopoulou,T., Stamatoyannopoulos,G. and Groudine,M. (1987) Evidence for a locus activation region: the formation of developmentally stable hypersensitive sites in globin-expressing hybrids. Nucleic Acids Res., 15, 10159-10177.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 10159-10177
    • Forrester, W.1    Takegawa, S.2    Papayannopoulou, T.3    Stamatoyannopoulos, G.4    Groudine, M.5
  • 25
    • 0023663887 scopus 로고
    • Position-independent, high-level expression of the human b-globin gene in transgenic mice
    • Grosveld,F., van Assendelft,G., Greaves,D. and Kollias,G. (1987) Position-independent, high-level expression of the human b-globin gene in transgenic mice. Cell, 51, 975-985.
    • (1987) Cell , vol.51 , pp. 975-985
    • Grosveld, F.1    van Assendelft, G.2    Greaves, D.3    Kollias, G.4
  • 26
    • 0032582826 scopus 로고    scopus 로고
    • Do LCRs open chromatin domains?
    • Higgs,D.R. (1998) Do LCRs open chromatin domains? Cell, 95, 299-302.
    • (1998) Cell , vol.95 , pp. 299-302
    • Higgs, D.R.1
  • 27
    • 0033215140 scopus 로고    scopus 로고
    • Locus control regions coming of age at a decade plus
    • Li,Q. and Peterson,K. (1999) Locus control regions coming of age at a decade plus. Trends Genet., 10, 403-408.
    • (1999) Trends Genet. , vol.10 , pp. 403-408
    • Li, Q.1    Peterson, K.2
  • 28
    • 0033215443 scopus 로고    scopus 로고
    • Looping versus linking: Toward a model for long-distance gene activation
    • Bulger,M. and Groudine,M. (1999) Looping versus linking: toward a model for long-distance gene activation. Genes Dev., 13, 2465-2477.
    • (1999) Genes Dev. , vol.13 , pp. 2465-2477
    • Bulger, M.1    Groudine, M.2
  • 29
    • 0034598936 scopus 로고    scopus 로고
    • Looping, linking and chromatin activity: New insights into β-globin locus regulation
    • Engel,J.D. and Tanimoto,K. (2000) Looping, linking and chromatin activity: new insights into β-globin locus regulation. Cell, 100, 499-502.
    • (2000) Cell , vol.100 , pp. 499-502
    • Engel, J.D.1    Tanimoto, K.2
  • 30
    • 0036170433 scopus 로고    scopus 로고
    • The solitary long terminal repeats of ERV-9 endogenous retrovirus are conserved during primate evolution and possess enhancer activities in embryonic and hematopoietic cells
    • Ling,J., Pi,W., Bollag,R., Zeng,S., Keskintepe,M., Saliman,H., Krantz,S., Whitney,B. and Tuan,D. (2002) The solitary long terminal repeats of ERV-9 endogenous retrovirus are conserved during primate evolution and possess enhancer activities in embryonic and hematopoietic cells. J. Virol., 76, 2410-2434.
    • (2002) J. Virol. , vol.76 , pp. 2410-2434
    • Ling, J.1    Pi, W.2    Bollag, R.3    Zeng, S.4    Keskintepe, M.5    Saliman, H.6    Krantz, S.7    Whitney, B.8    Tuan, D.9
  • 31
    • 0027254748 scopus 로고
    • A 5′ element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila
    • Chung,J., Whiteley,M. and Felsenfeld,G. (1993) A 5′ element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila. Cell, 74, 505-514.
    • (1993) Cell , vol.74 , pp. 505-514
    • Chung, J.1    Whiteley, M.2    Felsenfeld, G.3
  • 32
    • 0028180340 scopus 로고
    • A 5′ β-globin matrix-attachment region and the polyoma enhancer together confer position-independent transcription
    • Yu,J., Bock,J., Slightom,J. and Villeponteau,B. (1994) A 5′ β-globin matrix-attachment region and the polyoma enhancer together confer position-independent transcription. Gene, 139, 139-145.
    • (1994) Gene , vol.139 , pp. 139-145
    • Yu, J.1    Bock, J.2    Slightom, J.3    Villeponteau, B.4
  • 33
    • 0027998844 scopus 로고
    • Hypersensitive site 5 of the human β locus control region functions as a chromatin insulator
    • Li,Q. and Stamatoyannopoulos,G. (1995) Hypersensitive site 5 of the human β locus control region functions as a chromatin insulator. Blood, 84, 1399-1401.
    • (1995) Blood , vol.84 , pp. 1399-1401
    • Li, Q.1    Stamatoyannopoulos, G.2
  • 34
    • 0036094107 scopus 로고    scopus 로고
    • Conserved CTCF insulator elements flank the mouse and human β-globin loci
    • Farrell,C., West,A. and Felsenfeld,G. (2002) Conserved CTCF insulator elements flank the mouse and human β-globin loci. Mol. Cell. Biol., 22, 3820-3831.
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 3820-3831
    • Farrell, C.1    West, A.2    Felsenfeld, G.3
  • 35
    • 0027248268 scopus 로고
    • Rapid amplification of complementary DNA ends for generation of full-length complementary DNAs: Thermal RACE
    • Frohman,A. (1993) Rapid amplification of complementary DNA ends for generation of full-length complementary DNAs: thermal RACE. Methods Enzymol., 218, 340-356.
    • (1993) Methods Enzymol. , vol.218 , pp. 340-356
    • Frohman, A.1
  • 36
    • 0024591610 scopus 로고
    • An erythroid-specific, developmental-stage-independent enhancer far upstream of the human 'β-like globin' genes
    • Tuan,D., Solomon,W., London,I. and Lee,D. (1989) An erythroid-specific, developmental-stage-independent enhancer far upstream of the human 'β-like globin' genes. Proc. Natl Acad. Sci. USA, 86, 2554-2558.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2554-2558
    • Tuan, D.1    Solomon, W.2    London, I.3    Lee, D.4
  • 37
    • 0028853170 scopus 로고
    • NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region
    • Stamatoyannopoulos,J., Goodwin,A., Joyce T. and Lowrey,C. (1995) NF-E2 and GATA binding motifs are required for the formation of DNase I hypersensitive site 4 of the human beta-globin locus control region. EMBO J., 14, 106-116.
    • (1995) EMBO J. , vol.14 , pp. 106-116
    • Stamatoyannopoulos, J.1    Goodwin, A.2    Joyce, T.3    Lowrey, C.4
  • 39
    • 0033569326 scopus 로고    scopus 로고
    • Structural analysis and mapping of DNase I hypersensitivity of HS5 of the beta-globin locus control region
    • Li,Q., Zhang,M., Duan,Z. and Stamatoyannopoulos,G. (1999) Structural analysis and mapping of DNase I hypersensitivity of HS5 of the beta-globin locus control region. Genomics, 6, 183-193.
    • (1999) Genomics , vol.6 , pp. 183-193
    • Li, Q.1    Zhang, M.2    Duan, Z.3    Stamatoyannopoulos, G.4
  • 40
    • 0030921097 scopus 로고    scopus 로고
    • Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position and distance of the enhancer relative to the gene
    • Kong,S., Bohl,D., Li,C. and Tuan,D. (1997) Transcription of the HS2 enhancer toward a cis-linked gene is independent of the orientation, position and distance of the enhancer relative to the gene. Mol. Cell. Biol., 17, 3955-3965.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 3955-3965
    • Kong, S.1    Bohl, D.2    Li, C.3    Tuan, D.4
  • 41
    • 0021348543 scopus 로고
    • Advances in thalassemia research
    • Nienhuis,A., Anagnou,N. and Ley,T. (1984) Advances in thalassemia research. Blood, 63, 738-758.
    • (1984) Blood , vol.63 , pp. 738-758
    • Nienhuis, A.1    Anagnou, N.2    Ley, T.3
  • 42
    • 0037062951 scopus 로고    scopus 로고
    • RNA interference
    • Hannon,G. (2002) RNA interference. Nature, 418, 244-250.
    • (2002) Nature , vol.418 , pp. 244-250
    • Hannon, G.1
  • 43
    • 0029097707 scopus 로고
    • Modulation of enhancer-promoter interactions by insulators in the Drosophila embryo
    • Cai,H. and Levine,M. (1995) Modulation of enhancer-promoter interactions by insulators in the Drosophila embryo. Nature, 376, 533-536.
    • (1995) Nature , vol.376 , pp. 533-536
    • Cai, H.1    Levine, M.2
  • 44
    • 0036923739 scopus 로고    scopus 로고
    • Dynamics of enhancer-promoter communication during differentiation-induced gene activation
    • Hatzis,P. and Tallanidis,I. (2002) Dynamics of enhancer-promoter communication during differentiation-induced gene activation. Mol. Cell, 10, 1467-1477.
    • (2002) Mol. Cell , vol.10 , pp. 1467-1477
    • Hatzis, P.1    Tallanidis, I.2
  • 45
    • 0026482145 scopus 로고
    • Transcription of the hypersensitive HS2 enhancer in erythroid cells
    • Tuan,D., Kong,S. and Hu,K. (1992). Transcription of the hypersensitive HS2 enhancer in erythroid cells. Proc. Natl Acad. Sci. USA, 89, 11219-11223.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 11219-11223
    • Tuan, D.1    Kong, S.2    Hu, K.3
  • 47
    • 0036923833 scopus 로고    scopus 로고
    • Looping and interaction between hypersensitive sites in the active β-globin locus
    • Tolhuis,B., Palstra,R., Splinter,E., Grosveld,F. and Laat,W. (2002) Looping and interaction between hypersensitive sites in the active β-globin locus. Mol. Cell, 10, 1453-1465.
    • (2002) Mol. Cell , vol.10 , pp. 1453-1465
    • Tolhuis, B.1    Palstra, R.2    Splinter, E.3    Grosveld, F.4    Laat, W.5
  • 48
    • 0029051646 scopus 로고
    • Transcriptional complex stability and chromatin dynamics in vivo
    • Wijgerde,M., Grosveld,F. and Fraser,P. (1995) Transcriptional complex stability and chromatin dynamics in vivo. Nature, 377, 209-213.
    • (1995) Nature , vol.377 , pp. 209-213
    • Wijgerde, M.1    Grosveld, F.2    Fraser, P.3
  • 49
    • 0034811678 scopus 로고    scopus 로고
    • Intergenic transcription in the human b-globin gene cluster
    • Plant,K., Routledge,S. and Proudfoot,N. (2001) Intergenic transcription in the human b-globin gene cluster. Mol. Cell. Biol., 21, 6507-6514.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 6507-6514
    • Plant, K.1    Routledge, S.2    Proudfoot, N.3
  • 50
    • 0032059111 scopus 로고    scopus 로고
    • Activator-mediated recruitment of RNA polymerase II is the predominant mechanism for transcriptional activation in yeast
    • Keaveney,M. and Struhl,K. (1998) Activator-mediated recruitment of RNA polymerase II is the predominant mechanism for transcriptional activation in yeast. Mol. Cell, 1, 917-924.
    • (1998) Mol. Cell , vol.1 , pp. 917-924
    • Keaveney, M.1    Struhl, K.2
  • 51
    • 0028068714 scopus 로고
    • Facilitated binding of TATA-binding protein to nucleosomal DNA
    • Imbalzano,A., Kwon,H., Green,M.R. and Kingston,R.E. (1994) Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature, 370, 481-485.
    • (1994) Nature , vol.370 , pp. 481-485
    • Imbalzano, A.1    Kwon, H.2    Green, M.R.3    Kingston, R.E.4
  • 52
    • 0023970282 scopus 로고
    • Functional analysis of the long terminal repeats of intracisternal A particle genes: Sequences within the U3 region determine both the efficiency and direction of a promoter activity
    • Christy,R. and Huang,R.C. (1988) Functional analysis of the long terminal repeats of intracisternal A particle genes: sequences within the U3 region determine both the efficiency and direction of a promoter activity. Mol. Cell. Biol., 8, 1093-1102.
    • (1988) Mol. Cell. Biol. , vol.8 , pp. 1093-1102
    • Christy, R.1    Huang, R.C.2
  • 53
    • 0033061571 scopus 로고    scopus 로고
    • Initiation of translation in prokaryotes and eukaryotes
    • Kozak,M. (1999) Initiation of translation in prokaryotes and eukaryotes. Gene, 234, 187-208.
    • (1999) Gene , vol.234 , pp. 187-208
    • Kozak, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.