Extraordinary diversity of chemosensory receptor gene repertoires among vertebrates

Results and Problems in Cell Differentiation

Volumn 47, Issue , 2009, Pages 1-23

  Shi, P ^a   Zhang, J ^b  

^a KUNMING INSTITUTE OF ZOOLOGY   (China)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; HUMAN; MOLECULAR EVOLUTION; OLFACTORY RECEPTOR; PHYLOGENY; REVIEW; TASTE; VERTEBRATE;

ANIMALS; EVOLUTION, MOLECULAR; GENETIC VARIATION; HUMANS; PHYLOGENY; RECEPTORS, ODORANT; TASTE PERCEPTION; VERTEBRATES;

EID: 65449179899     PISSN: 00801844     EISSN: 18610412     Source Type: Book Series    
DOI: 10.1007/400_2008_4     Document Type: Review

References (102)

1. Adler E, Hoon MA, Mueller KL, Chandrashekar J, Ryba NJ, Zuker CS (2000) A novel family of mammalian taste receptors. Cell 100:693-702
2. Alioto TS, Ngai J (2005) The odorant receptor repertoire of teleost fish. BMC Genomics 6:173
3. Alioto TS, Ngai J (2006) The repertoire of olfactory C family G protein-coupled receptors in zebrafish: Candidate chemosensory receptors for amino acids. BMC Genomics 7:309
4. Behrens M, Foerster S, Staehler F, Raguse JD, Meyerhof W (2007) Gustatory expression pattern of the human TAS2R bitter receptor gene family reveals a heterogenous population of bitter responsive taste receptor cells. J Neurosci 27:12630-12640
5. Borowsky B, Adham N, Jones KA, Raddatz R, Artymyshyn R, Ogozalek KL, Durkin MM, Lakhlani PP, Bonini JA, Pathirana S, Boyle N, Pu X, Kouranova E, Lichtblau H, Ochoa FY, Branchek TA, Gerald C (2001) Trace amines: identification of a family of mammalian G protein-coupled receptors. Proc Natl Acad Sci USA 98:8966-897
6. Buck LB (2000) The molecular architecture of odor and pheromone sensing in mammals. Cell 100:611-618
7. Buck L, Axel R (1991) A novel multigene family may encode odorant receptors: A molecular basis for odor recognition. Cell 65:175-187
8. Bufe B, Hofmann T, Krautwurst D, Raguse JD, Meyerhof W (2002) The human TAS2R16 receptor mediates bitter taste in response to beta-glucopyranosides. Nat Genet 32:397-401
9. Chamero P, Marton TF, Logan DW, Flanagan K, Cruz JR, Saghatelian A, Cravatt BF, Stowers L (2007) Identification of protein pheromones that promote aggressive behaviour. Nature 450:899-902
10. Chandrashekar J, Mueller KL, Hoon MA, Adler E, Feng L, Guo W, Zuker CS, Ryba NJ (2000) T2Rs function as bitter taste receptors. Cell 100:703-711
11. Conte C, Ebeling M, Marcuz A, Nef P, Andres-Barquin PJ (2002) Identification and characterization of human taste receptor genes belonging to the TAS2R family. Cytogenet Genome Res 98:45-53
12. Conte C, Ebeling M, Marcuz A, Nef P, Andres-Barquin PJ (2003) Evolutionary relationships of the Tas2r receptor gene families in mouse and human. Physiol Genomics 14:73-82
13. Dulac C (1997) Molecular biology of pheromone perception in mammals. Semin Cell Dev Biol 8:197-205
14. Dulac C, Axel R (1995) A novel family of genes encoding putative pheromone receptors in mammals. Cell 83:195-206
15. Dulac C, Torello AT (2003) Molecular detection of pheromone signals in mammals: From genes to behaviour. Nat Rev Neurosci 4:551-562
16. Emes RD, Beatson SA, Ponting CP, Goodstadt L (2004) Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents. Genome Res 14:591-602
17. Fischer A, Gilad Y, Man O, Paabo S (2005) Evolution of bitter taste receptors in humans and apes. Mol Biol Evol 22:432-436
18. Gilad Y, Lancet D (2003) Population differences in the human functional olfactory repertoire. Mol Biol Evol 20:307-314
19. Gilad Y, Wiebe V, Przeworski M, Lancet D, Paabo S (2004) Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates. PLoS Biol 2:E5
20. Gilad Y, Man O, Glusman G (2005) A comparison of the human and chimpanzee olfactory receptor gene repertoires. Genome Res 15:224-230
21. Gilad Y, Man O, Paabo S, Lancet D (2003) Human specific loss of olfactory receptor genes. Proc Natl Acad Sci U S A 100:3324-3327
22. Gloriam DE, Bjarnadottir TK, Yan YL, Postlethwait JH, Schioth HB, Fredriksson R (2005) The repertoire of trace amine G-protein-coupled receptors: Large expansion in zebrafish. Mol Phylogenet Evol 35:470-482
23. Glusman G, Yanai I, Rubin I, Lancet D (2001) The complete human olfactory subgenome. Genome Res 11:685-702
24. Go Y (2006) Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates. Mol Biol Evol 23:964-972
25. Go Y, Satta Y, Takenaka O, Takahata N (2005) Lineage-specific loss of function of bitter taste receptor genes in humans and nonhuman primates. Genetics 170:313-326
26. Grus WE, Zhang J (2004) Rapid turnover and species-specificity of vomeronasal pheromone receptor genes in mice and rats. Gene 340:303-312
27. Grus WE, Zhang J (2006) Origin and evolution of the vertebrate vomeronasal system viewed through system-specific genes. Bioessays 28:709-718
28. Grus WE, Shi P, Zhang YP, Zhang JZ (2005) Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals. Proc Natl Acad Sci USA 102:5767-5772
29. Grus WE, Shi P, Zhang JZ (2007) Largest vertebrate vomeronasal type 1 receptor gene repertoire in the semiaquatic platypus. Mol Biol Evol 24:2153-2157
30. Hashiguchi Y, Nishida M (2005) Evolution of vomeronasal-type odorant receptor genes in the zebrafish genome. Gene 362:19-28
31. Hashiguchi Y, Nishida M (2006) Evolution and origin of vomeronasal-type odorant receptor gene repertoire in fishes. BMC Evol Biol 6:76
32. Hashiguchi Y, Nishida M (2007) Evolution of trace amine associated receptor (TAAR) gene family in vertebrates: Lineage-specific expansions and degradations of a second class of vertebrate chemosensory receptors expressed in the olfactory epithelium. Mol Biol Evol 24:2099-2107
33. Hashiguchi Y, Furuta Y, Kawahara R, Nishida M (2007) Diversification and adaptive evolution of putative sweet taste receptors in threespine stickleback. Gene 396:170-179
34. Herness MS, Gilbertson TA (1999) Cellular mechanisms of taste transduction. Annu Rev Physiol 61:873-900
35. Herrada G, Dulac C (1997) A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution. Cell 90:763-773
36. Hoon MA, Adler E, Lindemeier J, Battey JF, Ryba NJ, Zuker CS (1999) Putative mammalian taste receptors: A class of taste-specific GPCRs with distinct topographic selectivity. Cell 96:541-551
37. Hughes AL, Hughes MK (1993) Adaptive evolution in the rat olfactory receptor gene family. J Mol Evol 36:249-254
38. Keverne EB (1999) The vomeronasal organ. Science 286:716-720
39. Kim UK, Jorgenson E, Coon H, Leppert M, Risch N, Drayna D (2003) Positional cloning of the human quantitative trait locus underlying taste sensitivity to phenylthiocarbamide. Science 299:1221-1225
40. Kim UK, Wooding S, Ricci D, Jorde LB, Drayna D (2005) Worldwide haplotype diversity and coding sequence variation at human bitter taste receptor loci. Hum Mutat 26:199-204
41. Kim UK, Wooding S, Riaz N, Jorde LB, Drayna D (2006) Variation in the human TAS1R taste receptor genes. Chem Senses 31:599-611
42. Kimoto H, Haga S, Sato K, Touhara K (2005) Sex-specific peptides from exocrine glands stimulate mouse vomeronasal sensory neurons. Nature 437:898-901
43. Kinnamon SC, Margolskee RF (1996) Mechanisms of taste transduction. Curr Opin Neurobiol 6:506-513
44. Kitagawa M, Kusakabe Y, Miura H, Ninomiya Y, Hino A (2001) Molecular genetic identification of a candidate receptor gene for sweet taste. Biochem Biophys Res Commun 283:236-242
45. Lane RP, Young J, Newman T, Trask BJ (2004) Species specificity in rodent pheromone receptor repertoires. Genome Res 14:603-608
46. Li X, Staszewski L, Xu H, Durick K, Zoller M, Adler E (2002) Human receptors for sweet and umami taste. Proc Natl Acad Sci USA 99:4692-4696
47. Li X, Li W, Wang H, Cao J, Maehashi K, Huang L, Bachmanov AA, Reed DR, Legrand-Defretin V, Beauchamp GK, Brand JG (2005) Pseudogenization of a sweet-receptor gene accounts for cats' indifference toward sugar. PLoS Genet 1:e3
48. Liberles SD, Buck LB (2006) A second class of chemosensory receptors in the olfactory epithelium. Nature 442:645-650
49. Liman ER, Innan H (2003) Relaxed selective pressure on an essential component of pheromone transduction in primate evolution. Proc Natl Acad Sci USA 100:3328-3332
50. Lindemann B (2001) Receptors and transduction in taste. Nature 413:219-225
51. Loconto J, Papes F, Chang E, Stowers L, Jones EP, Takada T, Kumanovics A, Fischer Lindahl K, Dulac C (2003) Functional expression of murine V2R pheromone receptors involves selective association with the M10 and M1 families of MHC class Ib molecules. Cell 112:607-618
52. Malnic B, Godfrey PA, Buck LB (2004) The human olfactory receptor gene family. Proc Natl Acad Sci USA 101:2584-2589
53. Matsunami H, Buck LB (1997) A multigene family encoding a diverse array of putative pheromone receptors in mammals. Cell 90:775-784
54. Matsunami H, Montmayeur JP, Buck LB (2000) A family of candidate taste receptors in human and mouse. Nature 404:601-604
55. Max M, Shanker YG, Huang L, Rong M, Liu Z, Campagne F, Weinstein H, Damak S, Margolskee RF (2001) Tas1r3, encoding a new candidate taste receptor, is allelic to the sweet responsiveness locus Sac. Nat Genet 28:58-63
56. Menashe I, Man O, Lancet D, Gilad Y (2003) Different noses for different people. Nat Genet 34:143-144
57. Meyerhof W (2005) Elucidation of mammalian bitter taste. Rev Physiol Biochem Pharmacol 154:37-72
58. Mombaerts P (1999) Molecular biology of odorant receptors in vertebrates. Annu Rev Neurosci 22:487-509
59. Mombaerts P (2004) Genes and ligands for odorant, vomeronasal and taste receptors. Nat Rev Neurosci 5:263-278
60. Montmayeur JP, Liberles SD, Matsunami H, Buck LB (2001) A candidate taste receptor gene near a sweet taste locus. Nat Neurosci 4:492-498
61. Mundy NI, Cook S (2003) Positive selection during the diversification of class I vomeronasal receptor-like (V1RL) genes, putative pheromone receptor genes, in human and primate evolution. Mol Biol Evol 20:1805-1810
62. Nei M (2007) The new mutation theory of phenotypic evolution. Proc Natl Acad Sci USA 104:12235-12242
63. Nei M, Gu X, Sitnikova T (1997) Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proc Natl Acad Sci USA 94:7799-7806
64. Nelson G, Hoon MA, Chandrashekar J, Zhang Y, Ryba NJ, Zuker CS (2001) Mammalian sweet taste receptors. Cell 106:381-390
65. Niimura Y, Nei M (2003) Evolution of olfactory receptor genes in the human genome. Proc Natl Acad Sci USA 100:12235-12240
66. Niimura Y, Nei M (2005) Evolutionary dynamics of olfactory receptor genes in fishes and tetrapods. Proc Natl Acad Sci USA 102:6039-6044
67. Niimura Y, Nei M (2006) Evolutionary dynamics of olfactory and other chemosensory receptor genes in vertebrates. J Hum Genet 51:505-517
68. Niimura Y, Nei M (2007) Extensive gains and losses of olfactory receptor genes in Mammalian evolution. PLoS ONE 2:e708
69. Nozawa M, Kawahara Y, Nei M (2007) Genomic drift and copy number variation of sensory receptor genes in humans. Proc Natl Acad Sci USA 104:20421-20426
70. Parry CM, Erkner A, le Coutre J (2004) Divergence of T2R chemosensory receptor families in humans, bonobos, and chimpanzees. Proc Natl Acad Sci USA 101:14830-14834
71. Pfister P, Rodriguez I (2005) Olfactory expression of a single and highly variable V1r pheromone receptor-like gene in fish species. Proc Natl Acad Sci USA 102:5489-5494
72. Pfister P, Randall J, Montoya-Burgos JI, Rodriguez I (2007) Divergent evolution among teleost V1r receptor genes. PLoS ONE 2:e379
73. Prasad BC, Reed RR (1999) Chemosensation: Molecular mechanisms in worms and mammals. Trends Genet 15:150-153
74. Rodriguez I, Mombaerts P (2002) Novel human vomeronasal receptor-like genes reveal species - specific families. Curr Biol 12:R409-411
75. Rodriguez I, Del Punta K, Rothman A, Ishii T, Mombaerts P (2002) Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors. Nat Neurosci 5:134-140
76. Rouquier S, Blancher A, Giorgi D (2000) The olfactory receptor gene repertoire in primates and mouse: Evidence for reduction of the functional fraction in primates. Proc Natl Acad Sci USA 97:2870-2874
77. Ryba NJ, Tirindelli R (1997) A new multigene family of putative pheromone receptors. Neuron 19:371-379
78. Sainz E, Korley JN, Battey JF, Sullivan SL (2001) Identification of a novel member of the T1R family of putative taste receptors. J Neurochem 77:896-903
79. Saraiva LR, Korsching SI (2007) A novel olfactory receptor gene family in teleost fish. Genome Res 17:1448-1457
80. Shi P, Zhang J (2006) Contrasting modes of evolution between vertebrate sweet/umami receptor genes and bitter receptor genes. Mol Biol Evol 23:292-300
81. Shi P, Zhang J (2007) Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land. Genome Res 17:166-174
82. Shi P, Zhang J, Yang H, Zhang YP (2003) Adaptive diversification of bitter taste receptor genes in mammalian evolution. Mol Biol Evol 20:805-814
83. Shi P, Bielawski JP, Yang H, Zhang YP (2005) Adaptive diversification of vomeronasal receptor 1 genes in rodents. J Mol Evol 60:566-576
84. Smith CUM (2000) Biology of sensory systems. Wiley, New York
85. Soranzo N, Bufe B, Sabeti PC, Wilson JF, Weale ME, Marguerie R, Meyerhof W, Goldstein DB (2005) Positive selection on a high-sensitivity allele of the human bitter-taste receptor TAS2R16. Curr Biol 15:1257-1265
86. Tacher S, Quignon P, Rimbault M, Dreano S, Andre C, Galibert F. (2005) Olfactory receptor sequence polymorphism within and between breeds of dogs. J Hered 96: 812-816
87. Trask BJ, Friedman C, Martin-Gallardo A, Rowen L, Akinbami C, Blankenship J, Collins C, Giorgi D, Iadonato S, Johnson F, Kuo WL, Massa H, Morrish T, Naylor S, Nguyen OT, Rouquier S, Smith T, Wong DJ, Youngblom J, van den Engh G. (1998) Members of the olfactory receptor gene family are contained in large blocks of DNA duplicated polymorphically near the ends of human chromosomes. Hum Mol Genet 7: 13-26
88. Wang X, Thomas SD, Zhang J. (2004) Relaxation of selective constraint and loss of function in the evolution of human bitter taste receptor genes. Hum Mol Genet 13: 2671-2678
89. Wong KK, deLeeuw RJ, Dosanjh NS, Kimm LR, Cheng Z, Horsman DE, MacAulay C, Ng RT, Brown CJ, Eichler EE, Lam WL. (2007) A comprehensive analysis of common copy-number variations in the human genome. Am J Hum Genet 80: 91-104
90. Wooding S, Kim UK, Bamshad MJ, Larsen J, Jorde LB, Drayna D. (2004) Natural selection and molecular evolution in PTC, a bitter-taste receptor gene. Am J Hum Genet 74: 637-646
91. Wooding S, Bufe B, Grassi C, Howard MT, Stone AC, Vazquez M, Dunn DM, Meyerhof W, Weiss RB, Bamshad MJ. (2006) Independent evolution of bitter-taste sensitivity in humans and chimpanzees. Nature 440: 930-934
92. Yang H, Shi P, Zhang YP, Zhang JZ. (2005) Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats. Genomics 86: 306-315
93. Young JM, Trask BJ. (2002) The sense of smell: Genomics of vertebrate odorant receptors. Human Molecular Genetics 11: 1153-1160
94. Young JM, Trask BJ. (2007) V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Trends Genet 23: 212-215
95. Young JM, Kambere M, Trask BJ, Lane RP. (2005) Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs. Genome Res 15: 231-240
96. Zhang J. (2003) Evolution by gene duplication: An update. Trends Ecol Evol 18: 292-298
97. Zhang J. (2007) The drifting human genome. Proc Natl Acad Sci U S A 104: 20147-20148
98. Zhang J, Webb DM. (2003) Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates. Proc Natl Acad Sci U S A 100: 8337-8341
99. Zhang X, Rodriguez I, Mombaerts P, Firestein S. (2004) Odorant and vomeronasal receptor genes in two mouse genome assemblies. Genomics 83: 802-811
100. Zhang X, Zhang X, Firestein S. (2007) Comparative genomics of odorant and pheromone receptor genes in rodents. Genomics 89: 441-450
101. Zhao GQ, Zhang Y, Hoon MA, Chandrashekar J, Erlenbach I, Ryba NJ, Zuker CS. (2003) The receptors for mammalian sweet and umami taste. Cell 115: 255-266
102. Zozulya S, Echeverri F, Nguyen T. (2001) The human olfactory receptor repertoire. Genome Biol 2: RESEARCH0018