Composition and evolution of the V2r vomeronasal receptor gene repertoire in mice and rats

Genomics

Volumn 86, Issue 3, 2005, Pages 306-315

  Yang, Hui ^a,b   Shi, Peng ^c   Zhang, Ya Ping ^a,d   Zhang, Jianzhi ^c  

^a KUNMING INSTITUTE OF ZOOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c UNIVERSITY OF MICHIGAN   (United States)

^d YUNNAN UNIVERSITY   (China)

Author keywords

Evolution; Gene family; Mouse; Pheromone receptor; Rat; Rodents; Vomeronasal

Indexed keywords

G PROTEIN COUPLED RECEPTOR; PHEROMONE; UNCLASSIFIED DRUG; VOMERONASAL PHEROMONE RECEPTOR V2R;

AMINO ACID SUBSTITUTION; ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; GENE STRUCTURE; GENOME; MOLECULAR EVOLUTION; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PSEUDOGENE; RAT; RODENT; VERTEBRATE; VOMERONASAL ORGAN;

AMINO ACID SEQUENCE; ANIMALS; CHEMOTACTIC FACTORS; COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; MICE; MOLECULAR SEQUENCE DATA; PHYLOGENY; RATS; RECEPTORS, PHEROMONE; VOMERONASAL ORGAN;

RODENTIA; TETRAPODA; VERTEBRATA;

EID: 23244440415     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ygeno.2005.05.012     Document Type: Article

References (59)

1. C. Dulac, and A.T. Torello Molecular detection of pheromone signals in mammals: from genes to behaviour Nat. Rev. Neurosci. 4 2003 551 562
2. C. Dulac, and R. Axel A novel family of genes encoding putative pheromone receptors in mammals Cell 83 1995 195 206
3. G. Herrada, and C. Dulac A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution Cell 90 1997 763 773
4. H. Matsunami, and L.B. Buck A multigene family encoding a diverse array of putative pheromone receptors in mammals Cell 90 1997 775 784
5. N.J. Ryba, and R. Tirindelli A new multigene family of putative pheromone receptors Neuron 19 1997 371 379
6. P. Mombaerts Genes and ligands for odorant, vomeronasal and taste receptors Nat. Rev. Neurosci. 5 2004 263 278
7. T. Leinders-Zufall, A.P. Lane, A.C. Puche, W. Ma, M.V. Novotny, and M.T. Shipley Ultrasensitive pheromone detection by mammalian vomeronasal neurons Nature 405 2000 792 796
8. K. Del Punta, T. Leinders-Zufall, I. Rodriguez, D. Jukam, C.J. Wysocki, and S. Ogawa Deficient pheromone responses in mice lacking a cluster of vomeronasal receptor genes Nature 419 2002 70 74
9. C. Boschat, C. Pelofi, O. Randin, D. Roppolo, C. Luscher, and M.C. Broillet Pheromone detection mediated by a V1r vomeronasal receptor Nat. Neurosci. 5 2002 1261 1262
10. R.D. Emes, S.A. Beatson, C.P. Ponting, and L. Goodstadt Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents Genome Res. 14 2004 591 602
11. T. Leinders-Zufall, P. Brennan, P. Widmayer, P. Chandramani, A. Maul-Pavicic, and M. Jager MHC class I peptides as chemosensory signals in the vomeronasal organ Science 306 2004 1033 1037
12. L. Stowers, T.E. Holy, M. Meister, C. Dulac, and G. Koentges Loss of sex discrimination and male-male aggression in mice deficient for TRP2 Science 295 2002 1493 1500
13. B.G. Leypold, C.R. Yu, T. Leinders-Zufall, M.M. Kim, F. Zufall, and R. Axel Altered sexual and social behaviors in trp2 mutant mice Proc. Natl. Acad. Sci. USA 99 2002 6376 6381
14. J. Loconto, F. Papes, E. Chang, L. Stowers, and E.P. Jones T. Takada et al., Functional expression of murine V2R pheromone receptors involves selective association with the M10 and M1 families of MHC class Ib molecules Cell 112 2003 607 618
15. T. Ishii, J. Hirota, and P. Mombaerts Combinatorial coexpression of neural and immune multigene families in mouse vomeronasal sensory neurons Curr. Biol. 13 2003 394 400
16. I. Rodriguez, and P. Mombaerts Novel human vomeronasal receptor-like genes reveal species-specific families Curr. Biol. 12 2002 R409 R411
17. I. Rodriguez, K. Del Punta, A. Rothman, T. Ishii, and P. Mombaerts Multiple new and isolated families within the mouse superfamily of V1r vomeronasal receptors Nat. Neurosci. 5 2002 134 140
18. W.E. Grus, and J. Zhang Rapid turnover and species-specificity of vomeronasal pheromone receptor genes in mice and rats Gene 340 2004 303 312
19. X. Zhang, I. Rodriguez, P. Mombaerts, and S. Firestein Odorant and vomeronasal receptor genes in two mouse genome assemblies Genomics 83 2004 802 811
20. J.M. Young, M. Kambere, B.J. Trask, and R.P. Lane Divergent V1R repertoires in five species: amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs Genome Res. 15 2005 231 240
21. P. Shi, J. P. Bielawski, H. Yang, Y. P. Zhang, Adaptive diversification of vomeronasal receptor 1 genes in rodents, J. Mol. Evol. (in press).
22. W.E. Grus, P. Shi, Y.P. Zhang, and J. Zhang Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals Proc. Natl. Acad. Sci. USA 102 2005 5767 5772
23. J. Zhang, and D.M. Webb Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates Proc. Natl. Acad. Sci. USA 100 2003 8337 8341
24. N.I. Mundy, and S. Cook Positive selection during the diversification of class I vomeronasal receptor-like (V1RL) genes, putative pheromone receptor genes, in human and primate evolution Mol. Biol. Evol. 20 2003 1805 1810
25. R.H. Waterston, K. Lindblad-Toh, E. Birney, J. Rogers, J.F. Abril, and P. Agarwal Initial sequencing and comparative analysis of the mouse genome Nature 420 2002 520 562
26. R.A. Gibbs, G.M. Weinstock, M.L. Metzker, D.M. Muzny, E.J. Sodergren, and S. Scherer Genome sequence of the Brown Norway rat yields insights into mammalian evolution Nature 428 2004 493 521
27. N. Chaudhari, A.M. Landin, and S.D. Roper A metabotropic glutamate receptor variant functions as a taste receptor Nat. Neurosci. 3 2000 113 119
28. S. Sawyer Statistical tests for detecting gene conversion Mol. Biol. Evol. 6 1989 526 538
29. W.J. Murphy, P.A. Pevzner, and S.J. O'Brien Mammalian phylogenomics comes of age Trends Genet. 20 2004 631 639
30. J.P. Pin, T. Galvez, and L. Prezeau Evolution, structure, and activation mechanism of family 3/C G-protein-coupled receptors Pharmacol. Ther. 98 2003 325 354
31. J. Zhang Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes J. Mol. Evol. 50 2000 56 68
32. H. Kouros-Mehr, S. Pintchovski, J. Melnyk, Y.J. Chen, C. Friedman, and B. Trask Identification of non-functional human VNO receptor genes provides evidence for vestigiality of the human VNO Chem. Senses 26 2001 1167 1174
33. H.L. Eisthen Phylogeny of the vomeronasal system and of receptor cell types in the olfactory and vomeronasal epithelia of vertebrates Microsc. Res. Tech. 23 1992 1 21
34. Y. Cao, B.C. Oh, and L. Stryer Cloning and localization of two multigene receptor families in goldfish olfactory epithelium Proc. Natl. Acad. Sci. USA 95 1998 11987 11992
35. D.J. Speca, D.M. Lin, P.W. Sorensen, E.Y. Isacoff, J. Ngai, and A.H. Dittman Functional identification of a goldfish odorant receptor Neuron 23 1999 487 498
36. S. Martini, L. Silvotti, A. Shirazi, N.J. Ryba, and R. Tirindelli Co-expression of putative pheromone receptors in the sensory neurons of the vomeronasal organ J. Neurosci. 21 2001 843 848
37. L. Silvotti, G. Giannini, and R. Tirindelli The vomeronasal receptor V2R2 does not require escort molecules for expression in heterologous systems Chem. Senses 30 2005 1 8
38. J. Zhang, K.D. Dyer, and H.F. Rosenberg Evolution of the rodent eosinophil-associated RNase gene family by rapid gene sorting and positive selection Proc. Natl. Acad. Sci. USA 97 2000 4701 4706
39. A.L. Hughes, and M. Nei Evolution of the major histocompatibility complex: independent origin of nonclassical class I genes in different groups of mammals Mol. Biol. Evol. 6 1989 559 579
40. M. Nei, and A.L. Hughes K. Tsuji M. Aizawa T. Sasazuki Proceedings of the 11th Histocompatibility Workshop and Conference 1992 Oxford Univ. Press Oxford 27 38
41. X. Zhang, and S. Firestein The olfactory receptor gene superfamily of the mouse Nat. Neurosci. 5 2002 124 133
42. P. Shi, J. Zhang, H. Yang, and Y.P. Zhang Adaptive diversification of bitter taste receptor genes in mammalian evolution Mol. Biol. Evol. 20 2003 805 814
43. X. Wang, S.D. Thomas, and J. Zhang Relaxation of selective constraint and loss of function in the evolution of human bitter taste receptor genes Hum. Mol. Genet. 13 2004 2671 2678
44. R.P. Lane, T. Cutforth, R. Axel, L. Hood, and B.J. Trask Sequence analysis of mouse vomeronasal receptor gene clusters reveals common promoter motifs and a history of recent expansion Proc. Natl. Acad. Sci. USA 99 2002 291 296
45. Y. Suzuki, and M. Nei Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites Mol. Biol. Evol. 19 2002 1865 1869
46. J. Zhang Frequent false detection of positive selection by the likelihood method with branch-site models Mol. Biol. Evol. 21 2004 1332 1339
47. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
48. S.J. Wheelan, D.M. Church, and J.M. Ostell Spidey: a tool for mRNA-to-genomic alignments Genome Res. 11 2001 1952 1957
49. E.L. Sonnhammer, G. von Heijne, and A. Krogh A hidden Markov model for predicting transmembrane helices in protein sequences Proc. Int. Conf. Intell. Syst. Mol. Biol. 6 1998 175 182
50. T. Naito, Y. Saito, J. Yamamoto, Y. Nozaki, K. Tomura, and M. Hazama Putative pheromone receptors related to the Ca2+-sensing receptor in Fugu Proc. Natl. Acad. Sci. USA 95 1998 5178 5181
51. K. Hagino-Yamagishi, K. Moriya, H. Kubo, Y. Wakabayashi, N. Isobe, and S. Saito Expression of vomeronasal receptor genes in Xenopus laevis J. Comp. Neurol. 472 2004 246 256
52. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
53. N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
54. M. Nei, and S. Kumar Molecular Evolution and Phylogenetics 2000 Oxford Univ. New York
55. J. Felsenstein confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
56. A. Kumar, C.A. Dudley, and R.L. Moss Functional dichotomy within the vomeronasal system: distinct zones of neuronal activity in the accessory olfactory bulb correlate with sex-specific behaviors J. Neurosci. 19 1999 RC32
57. J. Zhang, H.F. Rosenberg, and M. Nei Positive Darwinian selection after gene duplication in primate ribonuclease genes Proc. Natl. Acad. Sci. USA 95 1998 3708 3713
58. Z. Yang, R. Nielsen, N. Goldman, and A.M. Pedersen Codon-substitution models for heterogeneous selection pressure at amino acid sites Genetics 155 2000 431 449
59. Z. Yang PAML: a program package for phylogenetic analysis by maximum likelihood Comput. Appl. Biosci. 13 1997 555 556