Evolution by the birth-and-death process in multigene families of the vertebrate immune system

Proceedings of the National Academy of Sciences of the United States of America

Volumn 94, Issue 15, 1997, Pages 7799-7806

  Nei, Masatoshi ^a   Gu, Xun ^a   Sitnikova, Tatyana ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFERENCE PAPER; GENETIC MODEL; IMMUNOGENETICS; IMMUNOGLOBULIN GENE; MAJOR HISTOCOMPATIBILITY COMPLEX; MOLECULAR EVOLUTION; MULTIGENE FAMILY; PHYLOGENY; PRIORITY JOURNAL;

VERTEBRATA;

EID: 0030791307     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.94.15.7799     Document Type: Article

References (73)

1. Smith, G. P. (1973) Cold Spring Harbor Symp. Quant. Biol. 38, 507-513.
2. Zimmer, E. A., Martin, S. L., Beverley, S. M., Kan, Y. W. & Wilson, A. C. (1980) Proc. Natl. Acad. Sci. USA 77, 2158-2162.
3. Irwin, D. M. & Wilson, A. C. (1990) J. Biol. Chem. 265, 4944-4952.
4. Arnheim, N. (1983) in Evolution of Genes and Proteins, eds. Nei, M. & Koehn, R. K. (Sinauer, Sunderland, MA), pp. 38-61.
5. Weiss, E. H., Mellor, A. L., Golden, L., Fahrner, K., Simpson, E., Hurst, J. & Flavell, R. A. (1983) Nature (London) 301, 671-674.
6. Ohta, T. (1991) Proc. Natl. Acad. Sci. USA 88, 6716-6720.
7. Rada, C., Lorenzi, R., Powis, S. J., Bogaerde, J. V. D., Parham, P. & Howard, J. (1990) Proc. Natl. Acad. Sci. USA 87, 2167-2171.
8. Hood, L., Campbell, J. H. & Elgin, S. C. R. (1975) Annu. Rev. Genet. 9, 305-353.
9. Bentley, D. L. & Rabbitts, T. H. (1983) Cell 32, 181-189.
10. McCormack, W. T., Hurley, E. A. & Thompson, C. B. (1993) Mol. Cell. Biol. 13, 821-830.
11. Ohta, T. (1983) Theor. Pop. Biol. 23, 216-240.
12. Gojobori, T. & Nei, M. (1984) Mol. Biol. Evol. 1, 195-212.
13. Hughes, A. L. & Nei, M. (1989) Mol. Biol. Evol. 6, 559-579.
14. Ota, T. & Nei, M. (1994) Mol. Biol. Evol. 11, 469-482.
15. Nei, M. & Hughes, A. L. (1991) in Evolution at the Molecular Level, eds. Selander, R., Clark, A. & Whittam, T. (Sinauer, Sunderland, MA), pp. 222-247.
16. Nei, M. & Hughes, A. L. (1992) in 11th Histocompatibility Workshop and Conference, eds. Tsuji, K., Aizawa, M. & Sasazuki, T. (Oxford Univ. Press, Oxford), Vol. 2, pp. 27-38.
17. Huber, C., Schäble, K. F., Huber, E., Klein, R., Meindl, A., Thiebe, R., Lamm, R. & Zachau, H. G. (1993) Eur. J. Immunol. 23, 2868-2875.
18. Brunsberg, U., Edfors-Lija, I., Andersson, L. & Gustafsson, K. (1996) Immunogenetics 44, 1-8.
19. Parham, P. & Ohta, T. (1996) Science 272, 67-74.
20. Yun, T. J., Melvold, R. W. & Pease, L. R. (1997) Proc. Natl. Acad. Sci. USA 94, 1384-1389.
21. Feder, J. N., Gnirke, A., Thomas, W., Tsuchihashi, Z., Ruddy, D. A., et al. (1996) Nat. Genet. 13, 399-408.
22. Trowsdale, J. (1995) Immunogenetics 41, 1-17.
23. Klein, J. & O'hUigin, C. (1994) Proc. Natl. Acad. Sci. USA 91, 6251-6252.
24. Rogers, J. H. (1985) EMBO J. 4, 749-753.
25. Klein, J. & Figueroa, F. (1986) Crit. Rev. Immunol. 6, 295-386.
26. Hughes, A. L. & Nei, M. (1989) Genetics 122, 681-686.
27. Hughes, A. L. & Nei, M. (1990) Mol. Biol. Evol. 7, 491-514.
28. Klein, J. (1986) Natural History of the Major Histocompatibility Complex (Wiley, New York).
29. Hedrick, P. W. & Kim, T. J. (1997) in Evolutionary Genetics from Molecules to Morphology, eds. Singh, R. S. & Krimbas, C. K. (Cambridge Univ. Press, New York), in press.
30. Hughes, A. L. & Nei, M. (1988) Nature (London) 335, 167-170.
31. Hughes, A., Hughes, M. K., Howell, C. Y. & Nei, M. (1994) Phil. Trans. R. Soc. Lond. B 345, 359-367.
32. Watkins, D. I., McAdams, S. N., Liu, X., Strang, C. R., Milford, E. L., Levine, C. G., Garber, T. L., Dogon, A. L., Lord, C. I., Ghim, S. H., Troup, G. M., Hughes, A. L. & Letvin, N. L. (1992) Nature (London) 357, 329-333.
33. Fodil, N., Laloux, L., Wanner, V., Pellet, P., Hauptmann, G., Mizuki, N., Inoko, H., Spies, T., Theordorou, I. & Bahram, S. (1996) Immunogenetics 44, 351-357.
34. Weiss, E. H., Golden, L., Fahrner, K., Mellor, A. L., Devlin, J. J., Bullman, H., Tiddens, H., Bud, H. & Flavell, R. A. (1984) Nature (London) 310, 650-655.
35. Kumar, S., Tamura, K. & Nei, M. (1993) MEGA: Molecular Evolutionary Genetic Analysis (Pennsylvania State Univ., University Park).
36. Lawlor, D. A., Zemmour, J., Ennis, P. D. & Parham, P. (1990) Annu. Rev. Immunol. 8, 23-63.
37. Zemmour, J., Koller, B. H., Ennis, P. D., Geraghty, D. E., Lawlor, D. A., Orr, H. T. & Parham, P. (1990) J. Immunol. 144, 3619-3629
38. Geraghty, D. E., Koller, B. H., Pei, J. & Hansen, J. A. (1992) J. Immunol. 149, 1947-1957.
39. Nei, M. (1996) Annu. Rev. Genet. 30, 371-403.
40. Hughes, A. L. (1991) Immunogenetics 33, 367-373.
41. Salgar, S. K., Kunz, H. W. & Gill, T. J. (1995) Immunogenetics 42, 244-253.
42. Liskay, R. M., Letsou, A. & Stachelek, J. L. (1987) Genetics 115, 161-167.
43. Chen, Z. W., McAdam, S. N., Hughes, A. L., Dogon, A. L., Letvin, N. L. & Watkins, D. I. (1992) J. Immunol. 148, 2547-2554.
44. Hedges, S. B., Parker, P. H., Sibley, C. G. & Kumar, S. (1996) Nature (London) 381, 226-229.
45. Schneider, S., Vincek, V., Tichy, H., Figueroa, F. & Klein, J. (1991) Mol. Biol. Evol. 8, 753-766.
46. Slade, R. W. & Mayer, W. E. (1995) Mol. Biol. Evol. 12, 441-450.
47. Tanaka, T. & Nei, M. (1989) Mol. Biol. Evol. 6, 447-459.
48. Li, H. & Hood, L. (1995) Genomics 26, 199-206.
49. Sasso, E. H., Buckner, J. H. & Suzuki, L. A. (1995) J. Clin. Invest. 96, 1591-1600.
50. Zachau, H. G. (1995) in Immunoglobulin Genes, eds. Honjo, T. & Alt, F. W. (Academic, San Diego), pp. 173-191.
51. Cook, G. P., Tomlinson, I. M., Walter, G., Riethman, H., Carter, N. P., Buluwela, L., Winter, G. & Rabbitts, T. H. (1994) Nat. Genet. 7, 162-168.
52. Matsuda, F., Shin, E. K., Nagaoka, H., Matsumura, R., Haino, M., Fukita, Y., Taka-ishi, S., Imai, T., Riley, J. H., Anand, R., Soeda, E. & Honjo, T. (1993) Nat. Genet. 3, 88-94.
53. Honjo, T. & Matsuda, F. (1995) in Immunoglobulin Genes, eds. Honjo, R. & Alt, F. W. (Academic, San Diego), pp. 145-171.
54. Tomlinson, I. M., Williams, S. C., Ignatovich, O., Corbertt, S. J. & Winter, G. (1996) V BASE Sequence Directory (MRC Centre for Protein Engineering, Cambridge, U.K.).
55. Schroeder, H. W. J., Hillson, J. L. & Perlmutter, R. M. (1990) Int. Immunol. 2, 41-50.
56. Williams, S. C., Frippiat, J.-P., Tomlinson, I. M., Ignatovich, O., Lefranc, M.-P. & Winter, G. (1996) J. Mol. Biol. 264, 220-232.
57. Andersson, E. & Matsunaga, T. (1995) Res. Immunol. 147, 233-240.
58. Rast, J. P., Anderson, M. K., Ota, T., Litman, R. T., Margittai, M., Shamblott, M. J. & Litman, G. W. (1994) Immunogenetics 40, 83-99.
59. Reynaud, C.-A., Dahan, A., Anquez, V. & Weill, J.-C. (1989) Cell 59, 171-183.
60. Knight, K. L. & Tunyaplin, C. (1995) in Immunoglobulin Genes, eds. Honjo, R. & Alt, F. W. (Academic, San Diego), pp. 289-314.
61. Dufour, V., Malinge, S. & Francois, N. (1996) J. Immunol. 156, 2163-2170.
62. Ota, T. & Nei, M. (1995) Mol. Biol. Evol. 12, 94-102.
63. McCormack, W. T., Tjoelker, L. W. & Thompson, C. B. (1991) Annu. Rev. Immunol. 9, 219-241.
64. Tonegawa, S. (1983) Nature (London) 302, 575-581.
65. Slightom, J. L., Blechl, A. E. & Smithies, O. (1980) Cell 21, 627-638.
66. Holmes, N. & Parham, P. (1985) EMBO J. 4, 2849-2854.
67. Hughes, A. L. (1995) Mol. Biol. Evol. 12, 247-258.
68. Nei, M. (1969) Nature (London) 221, 40-42.
69. Klein, J., Ono, H., Klein, D. & O'hUigin, C. (1993) Prog. Immunol. 8, 137-143.
70. Sinclair, M. C. & Aitken, R. (1995) Gene 167, 285-289.
71. Sun, J., Kacskovics, I., Brown, W. R. & Butler, J. E. (1994) J. Immunol. 153, 5618-5627.
72. Silverman, G. J. (1995) Ann. N.Y. Acad. Sci. 764, 342-355.
73. Roux, K. H., Dhanarajan, P., Gottschalk, V., McCormack, W. T. & Renshaw, R. W. (1991) J. Immunol. 146, 2027-2036.