Progress from CASP6 to CASP7

Proteins: Structure, Function and Genetics

Volumn 69, Issue SUPPL. 8, 2007, Pages 194-207

  Kryshtafovych, Andriy ^a   Fidelis, Krzysztof ^a   Moult, John ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF MARYLAND BIOTECHNOLOGY INSTITUTE   (United States)

Author keywords

CASP; Community wide experiment; Protein structure prediction

Indexed keywords

CASPASE 6; CASPASE 7;

ACCURACY; CONFERENCE PAPER; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; PROTEIN TARGETING; QUALITY CONTROL;

ALGORITHMS; COMPUTATIONAL BIOLOGY; MODELS, MOLECULAR; PROTEIN STRUCTURE, TERTIARY; PROTEINS;

EID: 36749031066     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21769     Document Type: Conference Paper

References (15)

1. Moult J, Fidelis K, Rost B, Hubbard T, Tramontano A. Critical assessment of methods of protein structure prediction (CASP)-round 6. Proteins 2005;61(Suppl 7):3-7.
2. Moult J, Fidelis K, Kryshtafovych A, Rost B, Hubbard T, Tramontano A. Critical assessment of methods of protein structure prediction - Round VII. Proteins 2007;69(Suppl 8):3-9.
3. Read R, Chavali G. Assessment of CASP7 predictions in the high accuracy template-based modeling category. Proteins 2007;69 (Suppl 8):27-37.
4. Kopp K, Bordoli L, Battey JNB, Kiefer F, Schwede T. Assessment of CASP7 predictions for template-based modeling targets. Proteins 2007;69(Suppl 8):38-56.
5. Jauch R, Yeo HC, Kolatkar PR, Clarke ND. Assessment of CASP7 structure predictions for template free targets. Proteins 2007;69(Suppl 8):57-67.
6. Venclovas C, Zemla A, Fidelis K, Moult J. Comparison of performance in successive CASP experiments. Proteins 2001;Suppl 5:163-170.
7. Venclovas C, Zemla A, Fidelis K, Moult J. Assessment of progress over the CASP experiments. Proteins 2003;53(Suppl 6):585-595.
8. Clarke ND, Ezkurdia I, Kopp J, Read RJ, Schwede T, Tress M. Domain definition and target classification for CASP7. Proteins 2007;69(Suppl 8):10-18.
9. Kryshtafovych A, Venclovas C, Fidelis K, Moult J. Progress over the first decade of CASP experiments. Proteins 2005;61(Suppl 7):225-236.
10. Zemla A. LGA - a method for finding 3D similarities in protein structures. Nucleic Acids Res 2003;31:3370-3374.
11. Zemla A, Venclovas C, Moult J, Fidelis K. Processing and evaluation of predictions in CASP4. Proteins 2001;Suppl 5:13-21.
12. Fiser A, Sali A. Modeller: generation and refinement of homology-based protein structure models. Methods Enzymol 2003;374:461-491.
13. Venclovas C, Zemla A, Fidelis K, Moult J. Some measures of comparative performance in the three CASPs. Proteins 1999;Suppl 3:231-237.
14. Lackner P, Koppensteiner WA, Domingues FS, Sippl MJ. Automated large scale evaluation of protein structure predictions. Proteins 1999;37(Suppl 3):7-14.
15. Lackner P, Koppensteiner WA, Sippl MJ, Domingues FS. ProSup: a refined tool for protein structure alignment. Protein Eng 2000;13:745-752.