메뉴 건너뛰기




Volumn 31, Issue 13, 2003, Pages 3381-3385

SWISS-MODEL: An automated protein homology-modeling server

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARTICLE; COMPUTER INTERFACE; COMPUTER MODEL; COMPUTER PROGRAM; E-MAIL; MOLECULAR MODEL; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEIN DATABASE; PROTEIN STRUCTURE; RELIABILITY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER GRAPHICS; EVALUATION; INTERNET; STRUCTURAL HOMOLOGY;

EID: 0042622380     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg520     Document Type: Article
Times cited : (4789)

References (35)
  • 3
    • 0035703311 scopus 로고    scopus 로고
    • Analysis and assessment of comparative modeling predictions in CASP4
    • Tramontano,A., Leplae,R. and Morea,V. (2001) Analysis and assessment of comparative modeling predictions in CASP4. Proteins, 45 (Suppl. 5), 22-38.
    • (2001) Proteins , vol.45 , Issue.SUPPL. 5 , pp. 22-38
    • Tramontano, A.1    Leplae, R.2    Morea, V.3
  • 5
    • 0035487690 scopus 로고    scopus 로고
    • A tour of structural genomics
    • Brenner,S.E. (2001) A tour of structural genomics. Nature Rev. Genet., 2, 801-809.
    • (2001) Nature Rev. Genet. , vol.2 , pp. 801-809
    • Brenner, S.E.1
  • 7
    • 0027473885 scopus 로고
    • A 3-D model for the CD40 ligand predicts that it is a compact trimer similar to the tumor necrosis factors
    • Peitsch,M.C. and Jongeneel,C.V. (1993) A 3-D model for the CD40 ligand predicts that it is a compact trimer similar to the tumor necrosis factors. Intern. Immunol., 5, 233-238.
    • (1993) Intern. Immunol. , vol.5 , pp. 233-238
    • Peitsch, M.C.1    Jongeneel, C.V.2
  • 8
    • 0029004590 scopus 로고
    • Protein modelling by E-Mail
    • Peitsch,M.C. (1995) Protein modelling by E-Mail. BioTechnology, 13, 658-660.
    • (1995) BioTechnology , vol.13 , pp. 658-660
    • Peitsch, M.C.1
  • 9
    • 0030053370 scopus 로고    scopus 로고
    • ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling
    • Peitsch,M.C. (1996) ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling. Biochem. Soc. Trans., 24, 274-279.
    • (1996) Biochem. Soc. Trans. , vol.24 , pp. 274-279
    • Peitsch, M.C.1
  • 11
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • Guex,N. and Peitsch,M.C. (1997) SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis, 18, 2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 13
    • 0032506030 scopus 로고    scopus 로고
    • Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
    • Sanchez,R. and Sali,A. (1998) Large-scale protein structure modeling of the Saccharomyces cerevisiae genome. Proc. Natl Acad. Sci. USA, 95, 13597-13602.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 13597-13602
    • Sanchez, R.1    Sali, A.2
  • 14
    • 0031406438 scopus 로고    scopus 로고
    • Protein distance constraints predicted by neural networks and probability density functions
    • Lund,O., Frimand,K., Gorodkin,J., Bohr,H., Bohr,J., Hansen,J. and Brunak,S. (1997) Protein distance constraints predicted by neural networks and probability density functions. Protein Eng., 10, 1241-1248.
    • (1997) Protein Eng. , vol.10 , pp. 1241-1248
    • Lund, O.1    Frimand, K.2    Gorodkin, J.3    Bohr, H.4    Bohr, J.5    Hansen, J.6    Brunak, S.7
  • 15
    • 0035747672 scopus 로고    scopus 로고
    • Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM
    • Bates,P.A., Kelley,L.A., MacCallum,R.M. and Sternberg,M.J. (2001) Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM. Proteins, 45 (Suppl. 5), 39-46.
    • (2001) Proteins , vol.45 , Issue.SUPPL. 5 , pp. 39-46
    • Bates, P.A.1    Kelley, L.A.2    MacCallum, R.M.3    Sternberg, M.J.4
  • 17
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali,A. and Blundell,T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
    • (1993) J. Mol. Biol. , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 18
    • 0001433241 scopus 로고
    • Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures
    • Sutcliffe,M.J., Haneef,I., Carney,D. and Blundell,T.L. (1987) Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures. Protein Eng., 1, 377-384.
    • (1987) Protein Eng. , vol.1 , pp. 377-384
    • Sutcliffe, M.J.1    Haneef, I.2    Carney, D.3    Blundell, T.L.4
  • 19
    • 0032169688 scopus 로고    scopus 로고
    • PQS: A protein quaternary structure file server
    • Henrick,K. and Thornton,J.M. (1998) PQS: a protein quaternary structure file server. Trends Biochem. Sci., 23, 358-361.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 358-361
    • Henrick, K.1    Thornton, J.M.2
  • 21
    • 0032540222 scopus 로고    scopus 로고
    • Assessing protein structures with a non-local atomic interaction energy
    • Melo,F. and Feytmans,E. (1998) Assessing protein structures with a non-local atomic interaction energy. J. Mol. Biol., 277, 1141-1152.
    • (1998) J. Mol. Biol. , vol.277 , pp. 1141-1152
    • Melo, F.1    Feytmans, E.2
  • 24
    • 44949272730 scopus 로고
    • A time-efficient, linear-space local similarity algorithm
    • Huang,X. and Miller,W. (1991) A time-efficient, linear-space local similarity algorithm. Adv. Appl. Math., 12, 337-357.
    • (1991) Adv. Appl. Math. , vol.12 , pp. 337-357
    • Huang, X.1    Miller, W.2
  • 26
    • 0032905858 scopus 로고    scopus 로고
    • A brighter future for protein structure prediction
    • Koehl,P. and Levitt,M. (1999) A brighter future for protein structure prediction. Nature Struct. Biol., 6, 108-111.
    • (1999) Nature Struct. Biol. , vol.6 , pp. 108-111
    • Koehl, P.1    Levitt, M.2
  • 27
    • 0030220165 scopus 로고    scopus 로고
    • The current state of the art in protein structure prediction
    • Moult,J. (1996) The current state of the art in protein structure prediction. Curr. Opin. Biotechnol., 7, 422-427.
    • (1996) Curr. Opin. Biotechnol. , vol.7 , pp. 422-427
    • Moult, J.1
  • 28
    • 0036720921 scopus 로고    scopus 로고
    • Completion and refinement of 3-D homology models with restricted molecular dynamics: Application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis
    • Flohil,J.A., Vriend,G. and Berendsen,H.J. (2002) Completion and refinement of 3-D homology models with restricted molecular dynamics: application to targets 47, 58, and 111 in the CASP modeling competition and posterior analysis. Proteins, 48, 593-604.
    • (2002) Proteins , vol.48 , pp. 593-604
    • Flohil, J.A.1    Vriend, G.2    Berendsen, H.J.3
  • 29
    • 0033400935 scopus 로고    scopus 로고
    • Challenges at the frontiers of structural biology
    • Sali,A. and Kuriyan,J. (1999) Challenges at the frontiers of structural biology. Trends Cell Biol., 9, M20-M24.
    • (1999) Trends Cell Biol. , vol.9
    • Sali, A.1    Kuriyan, J.2
  • 30
    • 0036330267 scopus 로고    scopus 로고
    • About the use of protein models
    • Peitsch,M.C. (2002) About the use of protein models. Bioinformatics, 18, 934-938.
    • (2002) Bioinformatics , vol.18 , pp. 934-938
    • Peitsch, M.C.1
  • 31
    • 0344843295 scopus 로고    scopus 로고
    • Protein structure modeling
    • Galperin,M.Y.and Koonin,E.V. (eds), Caister Academic Press, Norfolk
    • Kopp,J., Peitsch,M.C. and Schwede,T. (2003) Protein structure modeling. In Galperin,M.Y. and Koonin,E.V. (eds), Frontiers in Computational Genomics. Caister Academic Press, Norfolk, Vol. 3, pp. 89-121.
    • (2003) Frontiers in Computational Genomics , vol.3 , pp. 89-121
    • Kopp, J.1    Peitsch, M.C.2    Schwede, T.3
  • 34
    • 0028240897 scopus 로고
    • A new generation of information retrieval tools for biologists: The example of the ExPASy WWW server
    • Appel,R.D., Bairoch,A. and Hochstrasser,D.F. (1994) A new generation of information retrieval tools for biologists: the example of the ExPASy WWW server. Trends Biochem. Sci., 19, 258-260.
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 258-260
    • Appel, R.D.1    Bairoch, A.2    Hochstrasser, D.F.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.