Self-assembly of peptides and its potential application

Molecular Interfacial Phenomena of Polymers and Biopolymers

Volumn , Issue , 2005, Pages 421-474

  Fung, S Y ^a   Hong, Y ^a   Keyes Baig, C ^a   Chen, P ^a  

^a UNIVERSITY OF WATERLOO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIOPHYSICS;

BIOCHEMISTRY;

EID: 58149397927     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1533/9781845690830.3.421     Document Type: Chapter

References (232)

1. Aggeli A., Bell M., Boden N., Keen J.N., Knowles P.F., Mcleish T.C.B., Pitkeathly M., Radford S.E. Responsive gels formed by the spontaneous self-assembly of peptides into polymeric Β-sheet tapes. Nature 1997, 386:259-262.
2. Aggeli A., Boden N., Zhang S. Self-assembly of peptides in medicine: two sides of the coin. Mol. Med. Today 1999, 5:512-513.
3. Aggeli A., Nyrkova I.A., Bell M., Harding R., Carrick L., Mcleish T.C.B., Semenov A.N., Boden N. Hierarchical self-assembly of chiral rod-like molecules as a model for peptide Β-sheet tapes, ribbons, fibrils, and fibers. Proc. Natl. Acad. Sci. USA 2001, 98:11857-11862.
4. Aggeli A., Bell M., Carrick L.M., Fishwick C.W.G., Harding R., Mawer P.J., Radford S.E., Strong A.E., Boden N. pH as a trigger of peptide Β-sheet self-assembly and reversible switching between nematic and isotropic phases. J. Am. Chem. Soc 2003, 125:9619-9628.
5. Aina O.H., Sroka T.C., Chen M.-L., Lam K.S. Therapeutic cancer targeting peptides. Biopolymers 2002, 66:184-199.
6. Aizenberg J., Black A.J., Whitesides G.M. Control of cyrstal nucleation by patterned self-assembled monolayers. Nature 1999, 398:495-498.
7. Alakhov V.Y., Moskaleva E.Y., Batrakova E.V. Hypersensitization of multidrug resistent human ovarian carcinoma cells by pluronic P85 block copolymer. Bioconjugate Chem 1996, 7:209-216.
8. Allen C., Yu Y., Maysinger D., Eisenberg A. Polycarprolactone-b-poly(ethylene oxide) block copolymer micelles as a novel drug delivery vehicle for neurotrophic agents FK506 and L-685,818. Bioconjugate Chem 1998, 9:564-572.
9. Alper J. Chemists look to follow biology lead. Science 2002, 295:2396-2397.
10. Altman M., Lee P., Rich A., Zhang S. Conformational behavior of ionic self-complementary peptides. Protein Sci 2000, 9:1095-1105.
11. Amer Y.-A., Dowdy S.F., Ross F.P., Clohisy J.C., Teitelbaum S.L. Tat fusion proteins containing tyrosine 42-deleted IkBa Arrest Osteoclastogenesis. J. Biol. Chem 2001, 276:30499-30503.
12. Amorin M., Castedo L., Granja J.R. New cyclic peptide assemblies with hydrophobic cavities: the structural and thermodynamic basis of a new class of peptide nanotubes. J. Am. Chem. Soc 2003, 125:2844-2845.
13. Arakawa T., Timasheff S.N. Mechanism of protein salting in and salting out by divalent cation salts: balance between hydration and salt binding. Biochemistry 1984, 23:5912-5923.
14. Banerjee I.A., Yu L., Matsui H. Cu nanocrystal growth on peptide nanotubes by biomineralization: size control of Cu nanocrystals by tuning peptide conformation. Proc. Natl. Acad. Sci. USA 2003, 100:14678-14682.
15. Benzinger T.L.S., Gregory D.M., Burkoth T.S., Miller-Auer H., Lynn D.G., Botto R.E., Meredith S.C. Two-dimensional structure of Β-amyloid(10-35) fibrils. Biochemistry 2000, 39:3491-3499.
16. Berriz G.F., Gutin A.M., Shakhnovich E.I. Cooperativity and stability in a Langevin model of proteinlike folding. J. Chem. Phys 1997, 106:9276-9285.
17. Birks J.B. Photophysics of Aromatic Molecules 1970, Wiley, New York.
18. Bitan G., Kirkitadze M.D., Lomakin A., Vollers S.S., Benedek G.B., Teplow D.B. Amyloid Β-protein (AΒ) assembly: AΒ40 and AΒ42 oligomerize through distinct pathways. Proc. Natl. Acad. Sci. USA 2003, 100:330-335.
19. Bogoyevitch M.A., Kendrick T.S., Ng D.C.H., Barr R.K. Taking the cell by stealth or storm? Protein transduction domains (PTD) as versatile vectors for delivery. DNA and Cell Biology 2002, 2:879-894.
20. Bong D.T., Clark T.D., Granja J.R., Ghadiri M.R. Self-assembling organic nanotubes. Angew. Chem. Int. Ed 2001, 40:988-1011.
21. Brack A., Orgel L.E. Structures of alternating polypeptides and their possible prebiotic significance. Nature 1975, 256:383.
22. Breen T.L., Tien J., Oliver S.R.J., Hadzic T., Whitesides G.M. Design and self-assembly of open, regular, 3D mesostructures. Science 1999, 284:948-951.
23. Broglia R.A., Tiana G., Pasquali S., Roman H.E., Vigezzi E. Folding and aggregation of designed proteins. Proc. Natl. Acad. Sci. USA 1998, 95:12930-12933.
24. Brown C.L., Aksay I.A., Saville D.A., Hecht M.H. Templated-directed assembly of a de novo designed protein. J. Am. Chem. Soc 2002, 124:6846-6848.
25. Buriak J.M., Ghadiri M.R. Self-assembly of peptide based nanotubes. Mater. Sci. Eng. C 1997, 4:207-212.
26. Burkoth T.S., Benzinger T.L.S., Urban V., Morgan D.M., Gregory D.M., Thiyagarajan P., Botto R.E., Meredith S.C., Lynn D.G. Structure of the Β-amyloid(10-35) fibril. J. Am. Chem. Soc 2000, 122:7883-7889.
27. Cao T., Munk P., Ramireddy C., Tuzar Z., Webber S.E. Fluorescence studies of amphiphilic poly(methacrylic acid)-block-polystyrene-block-poly(methacrylic acid) micelles. Macromolecules 1991, 24:6300-6305.
28. Caplan M.R., Moore P.N., Zhang S., Kamm R.D., Lauffenburger D.A. Self-assembly of a Β-sheet protein governed by relief of electrostatic repulsion relative to van der Waals attraction. Biomacromolecules 2000, 1:627-631.
29. Caplan M.R., Schwartzfarb E.M., Zhang S., Kamm R.D., Lauffenburger D.A. Control of self-assembling oligopeptide matrix formation through systematic variation of amino acid sequence. Biomaterials 2002, 23:219-227.
30. Caruso F. Hollow capsule processing through colloidal templating and self-assembly. Chem. Eur. J 2000, 6:413-419.
31. Cerpa R., Cohen F.E., Kuntz I.D. Conformational switching in designed peptides: the helix/sheet transition. Fold. Des 1996, 1:91-101.
32. Chen C.S., Mrksich M., Huang S., Whitesides G.M., Ingber D.E. Geometric control of cell life and death. Science 1997, 276:1425-1428.
33. Chen P., Lahooti S., Policova Z., Cabrerizo-Vilchez M.A., Neumann A.W. Concentration dependence of the film pressure of human serum albumin at the water/decane interface. Colloids Surf. B: Biointerfaces 1996, 6:279-289.
34. Choo D.W., Schneider J.P., Graciani N.R., Kelly J.W. Nucleated antiparallel Β-sheet that folds and undergoes self-assembly: a template promoted folding strategy toward controlled molecular architecures. Macromolecules 1996, 29:355-366.
35. Colfer S., Kelly J.W., Powers E.T. Factors governing the self-assembly of a Β-hairpin peptide at the air-water interface. Langmuir 2003, 19:1312-1318.
36. Collier J.H., Hu B.-H., Ruberti J.W., Zhang J., Shum P., Thompson D.H., Messersmith P.B. Thermally and photochemically triggered self-assembly of peptide hydrogels. J. Am. Chem. Soc 2001, 123:9463-9464.
37. Cui Y., Wei Q., Park H., Lieber C.M. Nanowire nanosensors for highly sensitive and selective detection of biological and chemical species. Science 2001, 293:1289-1292.
38. Daniele D., Alain P., Gerard C. Trojan peptides: the penetratin system for intracellular delivery. Trends Cell Biol 1998, 84-87.
39. Derossi D., Joliot A.H., Chassaing G., Prochiantz A. The third helix of the antennapedia homeodomain translocates through biological barriers. J. Biol. Chem 1994, 269:10444-10450.
40. Derossi D., Calvet S., Trembleau A., Brunissen A., Chassaing G., Prochiantz A. Cell internalization of the third helix of the antennapedia homeodomain is receptor-independent. J. Biol. Chem 1996, 271:18188-18193.
41. Derossi D., Chassaing G., Prochiantz A. Trojan peptdies: the penetratin system for intracellular delivery. Trends Cell Biol 1998, 8:84-87.
42. Djalali R., Chen Y., Matsui H. Au nanowire fabrication from sequenced histidine-rich peptide. J. Am. Chem. Soc 2002, 124:13660-13661.
43. Djalali R., Chen Y., Matsui H. Au nanocrystal growth on nanotubes controlled by conformations and charges of sequenced peptide templates. J. Am. Chem. Soc 2003, 125:5873-5879.
44. Djalali R., Chen Y., Matsui H. Fabrication of Au nanowires on peptide nanotubes by tuning sequenced peptide conformations. Polymeric Materials: Sci. &Eng 2003, 88:29-30.
45. Dobson C.M. The structural basis of protein folding and its links with human disease. Phil. Trans. R. Soc. Lond. B 2001, 356:133-145.
46. Dujardin E., Mann S. Bio-inspired materials chemistry. Adv. Mater 2002, 14:775-788.
47. Elliott G., O'hare P. Intercellular trafficking and protein delivery by a herpes virus structural protein. Cell 1997, 88:223-233.
48. Elmquist A., Lindgren M., Bartfai T., Langel U. VE-cadherin-derived cell-penetrating peptide, pVEC, with carrier functions. Exp. Cell Res 2001, 269:237-244.
49. Fainerman V.B., Lucassen-Reynders E.H., Miller R. Adsorption of surfactants and proteins at fluid interfaces. Colloids Surf. A: Physicochemical and Engineering Aspects 1998, 143:141-165.
50. Favrin G., Irback A., Wallin S. Folding of a small helical protein using hydrogen bonds and hydrophobicity forces. Proteins 2002, 47:99-105.
51. Fernandez-Carneado J., Kogan M.J., Pujals S., Giralt E. Amphipathic peptides and drug delivery. Biopolymers 2004, 76:196-203.
52. Fernandez-Lopez S., Kim H.-S., Choi E.C., Delgado M., Granja J.R., Khasanov A., Kraehenbuehl K., Long G., Weinberger D.A., Wilcoxen K.M., Ghadiri M.R. Antibacterial agents based on the cyclic D,L-α-peptide architecture. Nature 2001, 412:452-455.
53. Fishwick C.W.G., Beevers A.J., Carrick L.M., Whitehouse C.D., Aggeli A., Boden N. Structures of helical Β-tapes and twisted ribbons: the role of side-chain interactions on twist and bend behavior. Nano Lett 2003, 3:1475-1479.
54. Flynn C.E., Mao C., Hayhurst A., Williams J.L., Georgiou G., Iverson B., Belcher A.M. Synthesis and organization of nanoscale II-IV semiconductor materials using evolved peptide specificity and viral capsid assembly. J. Mater. Chem 2003, 13:2414-2421.
55. Friedhoff P., Von Bergen M., Mandelkow E.-M., Davies P., Mandelkow E. A nucleated assembly mechanism of Alzheimer paired helical filaments. Proc. Natl. Acad. Sci. USA 1998, 95:15712-15717.
56. Fu X., Wang Y., Huang L., Sha Y., Gui L., Lai L., Tang Youqi Assemblies of metal nanoparticles and self-assembled peptide fibrils-formation of double helical and single-chain arrays of metal nanoparticles. Adv. Mater 2003, 15:902-906.
57. Fukushima Y. Sequence effects on helix-sheet conformational transitions of designed amphiphilic peptides. Bull. Chem. Soc. Jpn 1996, 69:701-708.
58. Fung S.Y., Keyes C., Duhamel J., Chen P. Concentration effect on the aggregation of a self-assembling oligopeptide. Biophys. J 2003, 85:537-548.
59. Fung S.Y., Hong Y., Dhadwar S.S., Zhao X., Chen P. Self-assembly of ionic-complementary peptides and their applications in nanobiotechnology. Handbook of Nanostructured Biomaterials and Their Applications in Nanobiotechnology 2004, American Scientific Publishers, Stevenson Ranch, CA USA. H.S. Nalwa (Ed.).
60. Fung S.Y., Bezaire J.A., Hong Y., Duhamel J., Chen P. Self-assembling oligopeptides as a potential hydrophobic drug carrier (in preparation) 2005.
61. Goeden-Wood N.L., Keasling J.D., Muller S.J. Self-assembly of a designed protein polymer into Β-sheet fibrils and responsive gels. Macromolecules 2003, 36:2932-2938.
62. Gonzalez D.E., Covitz K.M., Sadee W., Mrsny R.J. An oligopeptide transporter is expressed at high levels in the pancreatic carcinoma cell lines AsPc-1 and Capan-2. Cancer Res 1998, 58:519-525.
63. Gupta P., Hall C.K., Voegler A.C. Effect of denaturant and protein concentrations upon protein refolding and aggregation: a simple lattice model. Protein Sci 1998, 7:2642-2652.
64. Halverson K., Fraser P.E., Kirschner D.A., Lansbury P.T. Molecular determinants of amyloid deposition in Alzheimer's disease: conformational studies of synthetic Β-protein fragments. Biochemistry 1990, 29:2639-2644.
65. Harbottle R.P., Cooper R.G., Hart S.L., Ladhoff A., Mckay T., Knight A.M., Wagner E., Miller A.D., Coutelle C. An RGD-oligolysine peptide: a prototype construct for integrin-mediated gene delivery. Hum. Gene. Ther 1998, 9:1037-1047.
66. Harper J.D., Lansbury P.T. Models of amyloid seeding in Alzheimer's disease and scarpie: mechanistic truths and physiological consequences of the time-dependent solubility of amyloid proteins. Annu. Rev. Biochem 1997, 66:385-407.
67. Harrison P.M., Chan H.S., Prusiner S.B., Cohen F.E. Conformational propagation with prion-like characteristics in a simple lattice model of protein folding. Protein Sci 2001, 10:819-835.
68. Hart W.E., Istrail S. Lattice and off-lattice side chain models of protein folding: linear time structure prediction better than 86% of optimal. J. Comp. Biol 1997, 4:241-259.
69. Hartgerink J.D., Beniash E., Stupp S.I. Self-assembly and mineralization of peptide-amphiphile nanofibers. Science 2001, 294:1684-1688.
70. Hawiger J. Noninvasive intracellular delivery of functional peptides and proteins. Curr. Opin. Chem. Biol 1999, 3:89-94.
71. He G., George A. Dentin matrix protein 1 immobilized on type I collagen fibrils facilitates apatite deposition in vitro. J. Biol. Chem 2004, 279:11646-11656.
72. He G., Dahl T., Veis A., George A. Nucleation of apatite crystals in vitro by self-assembled dentin matrix protein 1. Nature Mater 2003, 2:552-558.
73. Hench L.L., Polak J.M. Third-generation biomedical materials. Science 2002, 295:1014-1017.
74. Holmes T.C., De Lacalle S., Su X., Liu G., Rich A., Zhang S. Extensive neurite outgrowth and active synapse formation on self-assembling peptide scaffolds. Proc. Natl. Acad. Sci. USA 2000, 97:6728-6733.
75. Hong Y., Legge R.L., Zhang S., Chen P. Effect of amino acid sequence and pH on nanofiber formation with self-assembling peptides EAK16-II and EAK16-IV. Biomacromolecules 2003, 4:1433-1442.
76. Hong Y., Lau L.S., Legge R.L., Chen P. Critical self-assembly concentration of an ionic-complementary peptide EAK16-I. J. Adhesion 2004, 80:913-931.
77. Horne W.S., Stout C.D., Ghadiri M.R. A heterocyclic peptide nanotube. J. Am. Chem. Soc 2003, 125:9372-9376.
78. Houseman B.T., Mrksich M. Towards quantitative assays with peptide chips: a surface engineering approach. Trends Biotechnol 2002, 20:279-281.
79. Hwang W., Marini D.M., Kamm R.D., Zhang S. Supramolecular structure of helical ribbons self-assembled from a Β-sheet peptide. J. Chem. Phys 2003, 118:389-397.
80. Hynes R.O. Integrins: versatility, modulation, and signaling in cell adhesion. Cell 1992, 69:11-25.
81. Ikkala O., Ten Brinke G. Functional materials based on self-assembly of polymeric supramolecules. Science 2002, 295:2407-2409.
82. Istrail S., Schwartz R., King J. Lattice simulation of aggregation funnels for protein folding. J. Comp. Biol 1999, 6:143-162.
83. Jayakumar R., Murugesan M., Ahmed M.R. Formation of multilamella vesicles ('Onions') in peptide based surfactant. Bioorg. Med. Chem. Lett 2000, 10:1547-1550.
84. Jen C.J., Mcintire L.V. Characteristics of shear-induced aggregation in whole blood. J. Lab. Clin. Med 1984, 103:115-124.
85. Jin W., Shi X., Caruso F. High activity enzyme microcrystal multilayer films. J. Am. Chem. Soc 2001, 123:8121-8122.
86. Jun S., Hong Y., Imamura H., Ha B.-Y., Bechhoefer J., Chen P. Self-assembly of the ionic peptide EAK16: the effect of charge distributions on self-assembly. Biophys. J 2004, 87:1249-1259.
87. Kayed R., Bernhagen J., Greenfield N., Sweimeh K., Brunner H., Voelter W., Kapurniotu A. Conformational transitions of islet amyloid polypeptide (IAPP) in amyloid formation in vitro. J. Mol. Biol 1999, 287:781-796.
88. Kelly J.W. The alternative conformations of amyloidogenic proteins and their multi-step assembly pathways. Curr. Opin. Struct. Biol 1998, 8:101-106.
89. Keyes-Baig C., Duhamel J., Fung S.Y., Bezaire J., Chen P. Self-assembling peptide as a potential carrier for hydrophobic compounds. J. Am. Chem. Soc 2004, 126:7522-7532.
90. Khan M.O., Mel'nikov S.M., Jonsson B. Anomalous salt effects on DNA conformation: experiment and theory. Macromolecules 1999, 32:8836-8840.
91. Kilk K., Magzoub M., Pooga M., Eriksson L.E., Langel U., Graslund A. Cellular internalization of a cargo complex with a novel peptide derived from the third helix of the islet-1 homeodomain. Comparison with the penetratin peptide. Bioconjugate Chem 2001, 12:911-916.
92. Kisiday J., Jin M., Kurz B., Hung H., Semino C., Zhang S., Grodzinsky A.J. Self-assembling peptide hydrogel fosters chondrocyte extracellular matrix production and cell division: implications for cartilage tissue repair. Proc. Natl. Acad. Sci. USA 2002, 99:9996-10001.
93. Kogiso M., Ohnishi S., Yase K., Masuda M., Shimizu T. Dicarboxylic oligopeptide bolaamphiphiles: proton-triggered self-assembly of microtubes with loose solid surfaces. Langmuir 1998, 14:4978-4986.
94. Kogiso M., Okada Y., Yase K., Shimizu T. Metal-comlexed nanofiber formation in water from dicarboxylic valylvaline bolaamphiphiles. J. Colloid Interface Sci 2004, 273:394-399.
95. Kwon G.S., Naito M., Kataoka K., Yokoyama M., Sakurai Y., Okano T. Block copolymer micelles as vehicles for hydrophobic drugs. Colloids Surf. B: Biointerfaces 1994, 2:429-434.
96. Lai Z., Colon W., Kelly J.W. The acid-mediated denaturation pathway of transthyretin yields a conformational intermediate that can self-assemble into amyolid. Biochemistry 1996, 35:6470-6482.
97. Langer R. New method of drug delivery. Science 1990, 249:1527-1533.
98. Langer R. Drug delivery and targeting. Nature 1998, 392:5-10.
99. Langer R. Biomaterials: status, challenges, and perspectives. AIChE J 2000, 46:1286-1289.
100. Langer R. Drugs on targets. Science 2001, 293:58-59.
101. Lashuel H.A., Labrenz S.R., Woo L., Serpell L.C., Kelly J.W. Protofilaments, filaments, ribbons, and fibrils from peptidomimetic self-assembly: implications for amyloid fibril formation and materials science. J. Am. Chem. Soc 2000, 122:5262-5277.
102. Lau D.H., Guo L., Liu R., Song A., Shao C., Lam K.S. Identifying peptide ligands for the cell surface receptors using cell-growth-on-bead assay and one-bead one compound combinatorial library. Biotechnol. Lett 2002, 24:497-500.
103. Lawrence R.N. James Gimzewski discusses the potential of nanobiotechnology. Drug Discov. Today 2002, 7:18-21.
104. Le Berre F., Chauveteau G., Pefferkorn E., Benedek G.B. Shear induced aggregation/fragmentation of hydrated colloids. J. Colloid Interface Sci 1998, 199:13-21.
105. Lehn J.-M. Toward self-organization and complex matter. Science 2002, 295:2400-2403.
106. Leon E.J., Verma N., Zhang S., Lauffenburger D.A., Kamm R.D. Mechanical properties of a self-assembling oligopeptide matrix. J. Biomater. Sci. Polymer Edn 1998, 9:297-312.
107. Liaw J., Aoyagi T., Kataoka K., Sakurai Y., Okano T. Visualization of PEOPBLA-pyrene polymeric micelles by atomic force microscopy. Pharmaceutical Res 1998, 15:1721-1726.
108. Lomakin A., Chung D.S., Benedek G.B., Kirschner D.A., Teplow D.B. On the nucleation and growth of amyloid Β-protein fibrils: detection of nuclei and quantitation of rate constants. Proc. Natl. Acad. Sci. USA 1996, 93:1125-1129.
109. Lomakin A., Teplow D.B., Kirschner D.A., Benedek G.B. Kinetic theory of fibrillogenesis of amyloid Β-protein. Proc. Natl. Acad. Sci. USA 1997, 94:7942-7947.
110. Lopez De La Paz M., Goldie K., Zurdo J., Lacroix E., Dobson C.M., Hoenger A., Serrano L. De novo designed peptdie-based amyloid fibrils. Proc. Natl. Acad. Sci. USA 2002, 99:16052-46057.
111. Lougheed W.D., Woutfe-Flanagan D.H., Clement J.R., Albisser A.M. Insulin aggregation in artificial delivery systems. Diabetologia 1980, 19:1-9.
112. Lowe C.R. Nanobiotechnology: the fabrication and applications of chemical and biological nanostructures. Curr. Opin. Struct. Biol 2000, 10:428-434.
113. Luo D., Saltzman W.M. Synthetic DNA delivery systems. Nature Biotech 2000, 18:33-37.
114. Ma Y., Zhang J., Zhang G., He H. Polyaniline nanowires on Si surfaces fabricated with DNA templates. J. Am. Chem. Soc 2004, 126:7097-7101.
115. Mahato R.I., Smith L.C., Rolland A. Pharmaceutical perspectives of non-viral gene therapy. Adv. Genet 1999, 41:95-156.
116. Makievski A.V., Fainerman V.B., Bree M., Wustneck R., Kragel J., Miller R. Adsorption of proteins at the liquid/air interface. J. Phys. Chem. B 1998, 102:417-425.
117. Mao C., Flynn C.E., Hayhurst A., Sweeney R.Y., Qi J., Georgiou G., Iverson B., Belcher A.M. Viral assembly of oriented quantum dot nanowires. Proc. Natl. Acad. Sci. USA 2003, 100:6946-6951.
118. Mao C., Solis D.J., Reiss B.D., Kottmann S.T., Sweeney R.Y., Hayhurst A., Georgiou G., Iverson B., Belcher A.M. Virus-based toolkit for the directed synthesis of magnetic and semiconducting nanowires. Science 2004, 303:213-217.
119. Marini D.M., Hwang W., Lauffenburger D.A., Zhang S., Kamm R.D. Left-handed helical ribbon intermediates in the self-assembly of a Β-sheet peptide. Nano Lett 2002, 2:295-299.
120. Marqusee S., Baldwin R.L. Helix stabilization by Glu-Lys+ salt bridges in short peptides of de novo design. Proc. Natl. Acad. Sci. USA 1987, 84:8898-8902.
121. Matsui H. Self-assembled peptide nanotube: assembling mechanism and fabrications. Recent Res. Develop. Phys. Chem 2002, 6:351-370.
122. Matsui H., Gologan B. Crystalline glysylglycine bolaamphiphile tubules and their pH-sensitive structural transformation. J. Phys. Chem. B 2000, 104:1183-3386.
123. Matsui H., Gologan B., Douberly G.E. Controlled immobilization of peptide nanotube-templated metallic wires on Au surfaces. Eur. Phys. J. D 2001, 16:403-406.
124. Mccutchen S.L., Lai Z., Miroy G.J., Kelly J.W., Colon W. Comparison of lethal and nonlethal Transthyretin variants and their relationship to amyloid disease. Biochemistry 1995, 34:13527-13536.
125. Meegan J.E., Aggeli A., Boden N., Brydson R., Brown A.P., Carrick L., Brough A.R., Hussain A., Ansell R.J. Designed self-assembled Β-sheet peptide fibrils as templates for silca nanotubes. Adv. Funct. Mater 2004, 14:31-37.
126. Merdan T., Kopecek J., Kissel T. Prospects for cationic polymers in gene and oligonucleotide therapy against cancer. Adv. Drug Del. Rev 2002, 54:715-758.
127. Merkle R.C. Biotechnology as a route to nanotechnology. Trends Biotechnol 1999, 17:271-274.
128. Mihara H., Takahashi Y. Engineering peptides and proteins that undergo Α-toΒ transitions. Curr. Opin. Struct. Biol 1997, 7:501-508.
129. Miura Y., Kimura S. Formation of oriented helical peptide layers on a gold surface due to the self-assembling properties of peptides. Langmuir 1998, 14:6935-6940.
130. Morris M.C., Vidal P., Chaloin F., Heitz F., Divita G. A new peptide vector for efficient delivery of oligonucleotides into mammalian cells. Nucleic Acids Res 1997, 25:2730-2736.
131. Morris M.C., Depollier J., Mery J., Heitz F., Divita G. A peptide carrier for the delivery of biologically active proteins into mammalian cells. Nat. Biotechnol 2001, 19:1173-1176.
132. Mrksich M. A surface chemistry approach to sutdying cell adhesion. Chem. Soc. Rev 2000, 29:267-273.
133. Mrksich M., Whitesides G.M. Using self-assembled monolayers to understand the interactions of manmade surfaces with proteins and cells. Annu. Rev. Biophys. Biomol. Struct 1996, 25:55-78.
134. Mutter M., Hersperger R. Peptides as conformational switch: medium-induced conformational transitions of designed peptides. Angew. Chem. Int. Ed. Engl 1990, 29:185-187.
135. Mutter M., Gassmann R., Buttkus U., Altmann K.-H. Switch peptides: pH-induced Α-helix to Β-sheet transtions of bis-amphiphilic oligopeptides. Angew. Chem. Int. Ed. Engl 1991, 30:1514-1516.
136. Naik R.R., Stringer S.J., Agarwal G., Jones S.E., Stone M.O. Biomimetic synthesis and partterning of silver nanoparticles. Nat. Mater 2002, 1:169-172.
137. Nakanishi T., Tamai I., Takaki A., Tsuji A. Cancer cell targeted drug delivery utilizing oligopeptide transporter activity. Int. J. Cancer 2000, 88:274-280.
138. Nandi P.K., Robinson D.R. The effects of salts on the free energy of the peptide group. J. Am. Chem. Soc 1972, 94:1299-1308.
139. Niece K.L., Hartgerink J.D., Donners J.J.J.M., Stupp S.I. Self-assembly combining two bioactive peptide-amphiphile molecules into nanofibers by electrostatic attraction. J. Am. Chem. Soc 2003, 125:7146-7147.
140. Nowak A.P., Breedveld V., Pakstis L., Ozbas B., Pine D.J., Pochan D., Deming T.J. Rapidly recovering hydrogel scaffolds from self-assembling diblock copolypeptide amphiphiles. Nature 2002, 417:424-428.
141. Oehlke J., Krause E., Wiesner B., Beyermann M., Bienert M. Extensive cellular uptake into endothelial cells of an amphipathic beta-sheet forming peptide. FEBS Lett 1997, 415:196-199.
142. Oehlke J., Scheller A., Wiesner B., Krause E., Beyermann M., Klauschenz E., Melzig M., Bienert M. Cellular uptake of an alpha-helical amphipathic model peptide with the potential to deliver polar compounds into the cell interior non-endocytically. Biochim. Biophys. Acta 1998, 1414:127-139.
143. Oehlke J., Wiesner B., Bienert M. Model amphipathic peptides. Cell-Penetrating Peptides 2002, 71-92.
144. Orive G., Hernandez R.M., Gascon A.R., Dominguez-Gil A., Pedraz J.L. Drug delivery in biotechnology: present and future. Curr. Opin. Biotech 2003, 14:659-664.
145. Oyama T., Sykes K.F., Samli K.N., Minna J.D., Johnston S.A., Brown K.C. Isolation of lung tumor specific peptides from a random peptide library: generation of diagnostic and cell-targeting reagents. Cancer Lett 2003, 202:219-230.
146. Pale-Grosdemange C., Simon E.S., Prime K.L., Whitesides G.M. Formation of self-assembled monolayers by chemisorption of derivatives of oligo(ethylene glycol) of structure HS(CH2)11(OCH2CH2)mOH on gold. J. Am. Chem. Soc 1991, 113:12-20.
147. Pardridge W.M., Kumagai A.K., Eisenberg J.B. Chimeric peptides as a vehicle for peptide pharmaceutical delivery through the blood-brain barrier. Biochem. Biophys. Res. Comm 1987, 146:307-313.
148. Perutz M.F., Pope B.J., Owen D., Wanker E.E., Scherzinger E. Aggregation of proteins with expanded glutamine and alanine repeats of the glutamine-rich and asparagine-rich domains of Sup35 and of the amyloid Β-peptide of amyloid plaques. Proc. Natl. Acad. Sci. USA 2002, 99:5596-5600.
149. Pierschbacher M.D., Ruoslahti E. Cell attachment activity of fibronectin can be duplicated by small synthetic fragments of the molecule. Nature 1984, 309:30-33.
150. Pooga M., Hallbrink M., Zorko M., Langel U. Cell penetration by transportan. FASEB J 1998, 12:67-77.
151. Porrata P., Goun E., Matsui H. Size-controlled self-assembly of peptide nanotubes using polycarbonate membranes as templates. Chem. Mater 2002, 14:4378-4381.
152. Powers E.T., Kelly J.W. Medium-dependent self-assembly of an amphiphilic peptide: direct observation of peptide phase domains at the air-water interface. J. Am. Chem. Soc 2001, 123:775-776.
153. Powers E.T., Yang S.I., Lieber C.M., Kelly J.W. Ordered Langmuir-Blodgett films of amphiphilic Β-hairpin peptides imaged by atomic force microscopy. Angew. Chem. Int. Ed 2002, 41:127-130.
154. Prieto A.L., Edelman G.M., Crossin K.L. Multiple integrins mediate cell attachment to cytotactin/tenascin. Proc. Natl. Acad. Sci. USA 1993, 90:10154-10158.
155. Qiu X., Donath E., Mohwald H. Permeability of ibuprofen in various polyelectrolyte multilayers. Macromol. Mater. Eng 2001, 286:591-597.
156. Qiu X., Laporatti S., Donath E., Mohwald H. Studies on the drug release properties of polysaccharide multilayers encapsulated ibuprofen microparticles. Langmuir 2001, 17:5375-5380.
157. Reches M., Gazit E. Casting metal nanowires within discrete self-assembled peptide. Science 2003, 300:625-627.
158. Reinhoudt D.N., Crego-Calama M. Synthesis beyond the molecule. Science 2002, 295:2403-2407.
159. Reiss B.D., Mao C., Solis D.J., Ryan K.S., Thomson T., Belcher A.M. Biological routes to metal alloy ferromagnetic nanostructures. Nano Lett 2004, 4:1127-1132.
160. Rhoades E., Agarwal J., Gafni A. Aggregation of an amyloidogenic fragment of human islet amyloid polypeptide. Biochim. Biophys. Acta 2000, 1476:230-238.
161. Rochet J.-C., Lansbury P.T. Amyloid fibrillogenesis: themes and variations. Curr. Opin. Struct. Biol 2000, 10:60-68.
162. Ruoslahti E. RGD and other recognition sequences for integrins. Annu. Rev. Cell Dev. Biol 1996, 12:697-715.
163. Ryadnov M.G., Woolfson D.N. Engineering the morphology of a self-assembling protein fibre. Nature Mater 2003, 2:329-332.
164. Sahoo S.K., Labhasetwar V. Nanotech approaches to drug delivery and imaging. Drug Discov. Today 2003, 8:1112-1120.
165. Santoso S., Zhang S. Self-assembled nanobiomaterials. Encyclopedia of Nanoscience and Nanotechnology 2003, American Scientific Publishers, Stevenson Ranch, CA. H.S. Nalwa (Ed.).
166. Santoso S., Hwang W., Hartman H., Zhang S. Self-assembly of surfactant-like peptides with variable glycine tails to form nanotubes and nanovesicles. Nano Lett 2002, 2:687-691.
167. Santoso S.S., Vauthey S., Zhang S. Structures, function and applications of amphiphilic peptides. Curr. Opin. Coll. Inter. Sci 2002, 7:262-266.
168. Sapra P., Allen T.M. Ligand-targeted liposomal anticancer drugs. Progress in Lipid Research 2003, 42:439-462.
169. Sarikaya M., Tamerler C., Jen A K.-Y., Schulten K., Baneyx F. Molecular biomimetics: nanotechnology through biology. Nature Mater 2003, 2:577-585.
170. 60 - a water soluble hydrocarbon anion. Chem. Lett 2000, 1098-1099.
171. Scheibel T., Parthasaarathy R., Sawicki G., Lin X.-M., Jaeger H., Lindquist S.L. Conducting nanowires built by controlled self-assembly of amyloid fibers and selective metal deposition. Proc. Natl. Acad. Sci. USA 2003, 100:4527-4532.
172. Schmidt O.G., Eberl K. Thin solid films roll up into nanotubes. Nature 2001, 410:168.
173. Schwartz J.J., Zhang S. Peptide-mediated cellular delivery. Curr. Opin. Mol. Ther 2000, 2:162-167.
174. Seeman N.C., Belch A.M. Emulating biology: building nanostructures from the bottom up. Proc. Natl. Acad. Sci. USA 2002, 99:6451-6455.
175. Semino C., Merok J.R., Crane G.G., Panagiotakos G., Zhang S. Functional differentiation of hepatocyte-like spheroid structures from putative liver progenitor cells in three-dimensional peptide scaffolds. Differentiation 2003, 71:262-270.
176. Semino C.E., Kasahara J., Hayashi Y., Zhang S. Entrapment of migrating hippocampal neural cells in three-dimensional peptide nanofiber scaffold. Tissue Eng 2004, 10:643-655.
177. Serio T.R., Cashikar A.G., Kowal A.S., Sawicki G.J., Moslehi J.J., Serpell L., Arnsdorf M.F., Lindquist S.L. Nucleated conformational conversion and the replication of conformational information by a prion determinant. Science 2000, 289:1317-1321.
178. Serra T., Colomer J., Casamitjana X. Aggregation and breakup of particles in a shear flow. J. Colloid Interface Sci 1997, 187:466-473.
179. Service R.F. Molecules get wired. Science 2001, 294:2442-2443.
180. Service R.F. Can chemists assemble a future for molecular electronics?. Science 2002, 295:2398-2399.
181. Shea J.-E., Nochomovitz Y.D., Guo Z., Brooks C.L.I. Exploring the space of protein folding Hamiltonians: the balance of forces in a minimalist Β-barrel model. J. Chem. Phys 1998, 109:2895-2903.
182. Shi X., Caruso F. Release behavior of thin-walled microcapsules composed of polyelectrolyte multilayers. Langmuir 2001, 17:2036-2042.
183. Silhol M., Tyagi M., Giacca M., Lebleu B.V. Different mechanisms for cellular internalization of the HIV-1 Tat-derived cell penetrating peptide and recombinant proteins fused to Tat. Eur. J. Biochem 2002, 269:494-501.
184. Simeoni F., Morris M.C., Heitz F., Divita G. Insight into the mechanism of the peptide-based gene delivery system MPG: implications for delivery of siRNA into mammalian cells. Nucleic Acids Res 2003, 31:2717-2724.
185. Sipe J.D., Cohen A.S. Review: history of the amyloid fibril. J. Struct. Biol 2000, 130:88-98.
186. Smith A.V., Hall C.K. Bridging the gap between homopolymer and protein models: a discontinuous molecular dynamics study. J. Chem. Phys 2000, 113:9331-9342.
187. Smith L.C., Duguid J., Wadhwa M.S., Logan M.J., Tung C.-H., Edwards V., Sparrow J.T. Synthetic peptide-based DNA complexes for nonviral gene delivery. Adv. Drug Del. Rev 1998, 30:115-131.
188. Song Y., Challa S.R., Medforth C.J., Qiu Y., Watt R.K., PeñA D., Miller J.E., Van Swol F., Shelnutt J.A. Synthesis of peptide-nanotube platinum-nanoparticle composites. Chem. Commun 2004, 1044-1045.
189. Soreghan B., Kosmoski J., Glabe C. Surfactant properties of Alzheimer's AΒ peptides and the mechanism of amyloid aggregation. J. Biol. Chem 1994, 269:28551-28554.
190. Stoltenberg R.M., Woolley A.T. DNA-templated nanowire fabrication. Biomed. Microdevices 2004, 6:105-111.
191. Strong A.E., Moore B.D. Self-assembling chiral monolayers of helical peptides bound to gold via side-chain thioethers. Chem. Commun 1998, 473-474.
192. Strong A.E., Moore B.D. Self-assembling monolayers of helical oligopeptides on gold with applications in molecular electronics. J. Mater. Chem 1999, 9:1097-1105.
193. Stupp S.I., Braun P.V. Molecular manipulation of microstructures: biomaterials, ceramics, and semiconductors. Science 1997, 277:1242-1248.
194. Takahashi Y., Ueno A., Mihara H. Design of a peptide undergoing ΑΒ structural transition and amyloid fibrillogenesis by the introduction of a hydrophobic defect. Chem. Eur. J 1998, 4:2475-2484.
195. Takahashi Y., Ueno A., Mihara H. Optimization of hydrophobic domains in peptides that undergo transformation from Α-helix to Β-fibril. Bioorg. Med. Chem 1999, 7:177-185.
196. Thirumalai D., Klimov D.K. Deciphering the timescale and mechanism of protein folding using minimal off-lattice models. Curr. Opin. Struct. Biol 1999, 9:197-207.
197. Thoren P.E.G., Persson D., Karlsson B., Norden B. The antennapedia peptide penatratin translocates across lipid bilayers - the first direct observation. FEBS Lett 2000, 482:265-268.
198. Tirrell M., Kokkoli E., Biesalski M. The role of surface science in bioengineered materials. Surf. Sci 2002, 500:61-83.
199. Tung C.H., Mueller S., Weissleder R. Novel branching membrane translocational peptide as gene delivery vector. Bioorg. Med. Chem 2002, 10:3609-3614.
200. Vamosi G., Clegg R.M. The helix-coil transition of DNA duplexes and hairpins observed by multiple fluorescence parameters. Biochemistry 1998, 37:14300-14316.
201. Vauthey S., Santoso S., Gong H., Watson N., Zhang S. Molecular self-assembly of surfactant-like peptides to form nanotubes and nanovesicles. Proc. Natl. Acad. Sci. USA 2002, 99:5355-5360.
202. Vendruscolo M., Zurdo J., Macphee C.E., Dobson C.M. Protein folding and misfolding: a paradigm of self-assembly and regulation in complex biological systems. Phil. Trans. R. Soc. Lond 2003, 361:1205-1222.
203. Wagner E. Application of membrane-active peptides for nonviral gene delivery. Adv. Drug Del. Rev 1999, 38:279-289.
204. Walsh D.M., Hartley D.M., Kusumoto Y., Fezoui Y., Condron M.M., Lomakin A., Benedek G.B., Selkoe D.J., Teplow D.B. Amyloid Β-protein fibrillogenesis. J. Biol. Chem 1999, 274:25945-25952.
205. Waterhous D.V., Johnson W.C. Importance of environment in determining secondary structure in proteins. Biochemistry 1994, 33:2121-2128.
206. West M.W., Wang W., Patterson J., Mancias J.D., Beasley J.R., Hecht M.H. De novo amyloid proteins from designed combinatorial libraries. Proc. Natl. Acad. Sci. USA 1999, 96:11211-11216.
207. Whitesides G.M., Grzybowski B. Self-assembly at all scales. Science 2002, 295:2418-2421.
208. Whitesides G.M., Mathias J.P., Seto C.T. Molecular self-assembly and nanochemistry: a chemical strategy for the synthesis of nanostructures. Science 1991, 254:1312-1319.
209. Xiong H., Buckwalter B.L., Shieh H.-M., Hecht M.H. Periodicity of polar and nonpolar amino acids is the major determinant of secondary structure in self-assembling oligomeric peptides. Proc. Natl. Acad. Sci. USA 1995, 92:6349-6353.
210. Xu G., Wang W., Groves J.T., Hecht M.H. Self-assembled monolayers from a designed combinatorial library of de novo Β-sheet proteins. Proc. Natl. Acad. Sci. USA 2001, 98:3652-3657.
211. Xu L., Guo Y., Xie R., Zhuang J., Yang W., Li T. Three-dimensional assembly of Au nano particles using dipeptides. Nanotechnology 2002, 13:725-728.
212. Yamada K.M. Adhesive recognition sequences. J. Biol. Chem 1991, 266:12809-12812.
213. Yang G., Woodhouse K.A., Yip C.M. Substrate-facilitated assembly of elastin-like peptides: studies by variable-temperature in situ atomic force microscopy. J. Am. Chem. Soc 2002, 124:10648-10649.
214. Yang J., Mayer M., Kriebel J.K., Garstecki P., Whitesides G.M. Self-assembled aggregates of IgGs as templates for the growth of clusters of gold nanoparticles. Angew. Chem. Int. Ed 2004, 43:1555-1558.
215. Yekta A., Xu B., Duhamel J., Adiwidjaja H., Winnik M.A. Fluorescence studies of associating polymers in water: determination of the chain aggregation number and a model for the association process. Macromolecules 1995, 28:956-966.
216. Yu L., Banerjee I.A., Matsui H. Direct growth of shape-controlled nanocrystals on nanotubes via biological recognition. J. Am. Chem. Soc 2003, 125:14837-14840.
217. Yu L., Banerjee I.A., Matsui H. Incorporation of sequenced peptides on nanotubes for Pt coating: smart control of nucleation and morphology via activation of metal binding sites on amino acids. J. Mater. Chem 2004, 14:739-743.
218. Yu L., Banerjee I.A., Shima M., Rajan K., Matsui H. Size-controlled Ni nanocrystal growth on peptide nanotubes and their magnetic properties. Adv. Mater 2004, 16:709-712.
219. Zanta M.A., Pascale B.V., Behr J.P. Gene delivery: a single nuclear localization signal peptide is sufficient to carry DNA to the cell nucleus. Proc. Natl. Acad. Sci. USA 1999, 96:91-96.
220. Zhang S. Molecular self-assembly. Encyclopedia of materials: science and technology 2001, 5822-5829. Elsevier, Oxford. K.H.J. Buschow, R.W. Cahn, M.C. Hemings, B. Ilschner, E.J. Kramer, S. Mahajan (Eds.).
221. Zhang S. Emerging biological materials through molecular self-assembly. Biotechnol. Adv 2002, 20:321-339.
222. Zhang S. Fabrication of novel biomaterials through molecular self-assembly. Nature Biotech 2003, 21:1171-1178.
223. Zhang S., Altman M. Peptide self-assembly in functional polymer science and engineering. Reactive and Functional Polymers 1999, 41:91-102.
224. Zhang S., Rich A. Direct conversion of an oligopeptide from a Β-sheet to an Α-helix: a model for amyloid formation. Proc. Natl. Acad. Sci. USA 1997, 94:23-28.
225. Zhang S., Lockshin C., Herbert A., Winter E., Rich A. Zoutin, a putative Z-DNA binding protein in Saccharomyces cerevisiae. EMBO. J 1992, 11:3787-3796.
226. Zhang S., Holmes T., Lockshin C., Rich A. Spontaneous assembly of a self-complementary oligopeptide to form a stable macroscopic membrane. Proc. Natl. Acad. Sci. USA 1993, 90:3334-3338.
227. Zhang S., Lockshin C., Cook R., Rich A. Unusually stable Β-sheet formation in an ionic self-complementary oligopeptide. Biopolymers 1994, 34:663-672.
228. Zhang S., Holmes T., Dipersio C.M., Hynes R.O., Su X., Rich A. Self-complementary oligopeptide matrices support mammalian cell attachment. Biomaterials 1995, 16:1385-1393.
229. Zhang S., Yan L., Altman M., Lassle M., Nugent H., Frankel F., Lauffenburger D.A., Whitesides G.M., Rich A. Biological surface engineering: a simple system for cell pattern formation. Biomaterials 1999, 20:1213-1220.
230. Zhang S., Marini D.M., Hwang W., Santoso S. Design of nanostructured biological materials through self-assembly of peptides and proteins. Curr. Opin. Chem. Biol 2002, 6:865-871.
231. Zhou S., Burger C., Chu B., Sawamura M., Nagahama N., Toganoh M., Hackler U.E., Isobe H., Nakamura E. Spherical bilayer vesicles of fullerene-based surfactants in water: a laser light scattering study. Science 2001, 291:1944-1947.
232. Zou W.-Q., Yang D.-S., Fraser P.E., Cashman N.R., Chakrabartty A. All or none fibrillogenesis of a prion peptide. Eur. J. Biochem 2001, 268:4885-4891.