The Helix-coil transition of DNA duplexes and hairpins observed by multiple fluorescence parameters

Biochemistry

Volumn 37, Issue 40, 1998, Pages 14300-14316

  Vámosi, György ^a,b   Clegg, Robert M ^a,c  

^a MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

^b UNIVERSITY OF DEBRECEN   (Hungary)

^c University of Illinois at Urbana Champaign   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ANIMAL CELL; ANISOTROPY; ARTICLE; BASE PAIRING; COMPLEX FORMATION; CONFORMATIONAL TRANSITION; DNA DENATURATION; DNA DETERMINATION; DNA HELIX; DNA STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; SPECTROSCOPY; THERMODYNAMICS;

DNA; DNA, SINGLE-STRANDED; ENERGY TRANSFER; ENTROPY; FLUORESCEIN; FLUORESCENCE POLARIZATION; FLUORESCENT DYES; HEAT; MODELS, CHEMICAL; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; NUCLEIC ACID HETERODUPLEXES; OLIGONUCLEOTIDES; RHODAMINES; SPECTROMETRY, FLUORESCENCE; THERMODYNAMICS;

EID: 0344936650     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9727601     Document Type: Article

References (39)

1. Clegg, R. M., Murchie, A. I. H., Zechel, A., and Lilley, D. M. J. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 2994-2998.
2. Gohlke, C., Murchie, A. I. H., Lilley, D. M. J., and Clegg, R. M. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 11660-11664.
3. Murchie, A. I. H., Clegg, R. M., von Kitzing, E., Duckett, D. R., Diekmann, S., and Lilley, D. M. J. (1989) Nature 341, 763-766.
4. Clegg, R. M., Murchie, A. I. H., Zechel, A., Carlberg, C., Diekmann, S., and Lilley, D. M. J. (1992) Biochemistry 31, 4846-4856.
5. Clegg, R. M., Murchie, A. I. H., and Lilley, D. M. J. (1994) Biophys. J. 66, 99-109.
6. Cooper, J. P., and Hagerman, P. J. (1990) Biochemistry 29, 9261-9268.
7. Eis, P. S., and Millar, D. P. (1993) Biochemistry 32, 13852-13860.
8. Millar, D. P., and Fee, R. S. (1997) Biophys. J. 72, A6.
9. Yang, M., and Millar, D. P. (1996) Biochemistry 35, 7959-7967.
10. Cardullo, R. A., Agrawal, S., Flores, C., Zamecnik, P. C., and Wolf, D. E. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 8790-8794.
11. Parkhurst, K. M., and Parkhurst, L. J. (1993) Biophys. J. 64, A266.
12. Morrison, L. E., and Stols, L. M. (1993) Biochemistry 32, 3095-3104.
13. Xu, D., Evans, K. O., and Nordlund, T. M. (1994) Biochemistry 33, 9592-9599.
14. Parkhurst, K. M., and Parkhurst, L. J. (1995) Biochemistry 34, 285-292.
15. Breslauer, K. J., Frank, R., Blöcker, H., and Marky, L. A. (1986) Proc. Natl. Acad. Sci. U.S.A. 83, 3746-3750.
16. Poland, D., and Scheraga, H. A. (1970) Theory of Helix-Coil Transitions in Biopolymers, Academic Press, New York.
17. Vámosi, G., Gohlke, C., and Clegg, R. M. (1996) Biophys. J. 71, 972-994.
18. Haasnoot, C. A., den Hartog, J. H. J., de Rooij, J. F. M., van Boom, J. H., and Altona, A. (1980) Nucleic Acids Res. 8, 169-181.
19. Orbons, L. P., van der Marel, G. A., van Boom, J. H., and Altona, C. (1986) Nucleic Acids Res. 14, 4187-4196.
20. Rinkel, L. J., van der Marel, G. A., van Boom, J. H., and Altona, C. (1987) Eur. J. Biochem. 166, 87-101.
21. Pieters, J. M., Mellema, J. R., van den Elst, H., van der Marel, G. A., van Boom, J. H., and Altona, C. (1989) Biopolymers 28, 717-740.
22. Antao, V. P., Lai, S. Y., and Tinoco, I., Jr. (1991) Nucleic Acids Res. 19, 5901-5905.
23. Antao, V. P., and Tinoco, I., Jr. (1992) Nucleic Acids Res 20, 819-824.
24. Avizonis, D. Z., and Kearns, D. R. (1995) Biopolymers 35 187-200.
25. Varani, G. (1995) Ann. Rev. Biophys. Biomol. Struct. 24, 379-404.
26. Beaucage, S. L., and Caruthers, M. H. (1981) Tetrahedron Lett. 22, 1859-1862.
27. Connolly, B. A. (1987) Nucleic Acids Res. 15, 3131-3139.
28. Lakowicz, J. R. (1983) Principles of Fluorescence Spectroscopy, Plenum Press, New York.
29. Gratton, E., Jameson, D. M., Rosato, N., and Weber, G. (1984) Rev. Sci. Instrum. 55, 486-494.
30. Jameson, D. M., Gratton, E., and Hall, R. D. (1984) Appl. Spectrosc. Rev. 20, 55-106.
31. Piston, D. W., Marriott, G., Radivoyevich, T., Clegg, R. M., Jovin, T. M., and Gratton, E. (1989) Rev. Sci. Instrum. 60, 2596-2600,
32. Förster, T. (1948) Ann. Phys. 2, 55-75.
33. Förster, T. (1951) Fluoreszenz Organischer Verbindungen, Vandenhoeck & Ruprecht, Göttingen, Germany.
34. Clegg, R. M. (1996) in Fluorescence Imaging Spectroscopy and Microscopy (Wang, X. F., and Herman, B., Eds.) pp 179-252, John Wiley & Sons, Inc., New York.
35. Dale, R. E., Eisinger, J., and Blumberg, W. E. (1979) Biophys. J. 26, 161-194.
36. Hirao, I., Kawai, G., Yoshizawa, S., Nishimura, Y., Ishido, Y., Watanabe, K., and Miura, K. (1994) Nucleic Acids Res. 22, 576-582.
37. Gohlke, C. (1994) Masters Thesis, Georg-August Universität, Göttingen, Germany.
38. Gralla, J., and Crothers, D. M. (1973) J. Mol. Biol. 73, 497-511.
39. Stühmeier, F., Lilley, D. M. J., and Clegg, R. M. (1997) Biochemistry 36, 13539-13555.