-
2
-
-
0036306859
-
Positive and negative feedback: Striking a balance between necessary antagonists
-
Cinquin O, Demongeot J. 2002. Positive and negative feedback: Striking a balance between necessary antagonists. J Theor Biol 216:229-241.
-
(2002)
J Theor Biol
, vol.216
, pp. 229-241
-
-
Cinquin, O.1
Demongeot, J.2
-
3
-
-
0032077377
-
From specific gene regulation to genomic networks: A global analysis of transcriptional regulation in Escherichia coli
-
Thieffry D, Huerta AM, Perez-Rueda E, Collado-Vides J. 1998. From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli. Bioessays 20:433-440.
-
(1998)
Bioessays
, vol.20
, pp. 433-440
-
-
Thieffry, D.1
Huerta, A.M.2
Perez-Rueda, E.3
Collado-Vides, J.4
-
4
-
-
0029267491
-
Dynamical behavior of biological regulatory networks. 1. Biological role of feedback loops and practical use of the concept of the loop-characteristic state
-
Thomas R, Thieffry D, Kaufman M. 1995. Dynamical behavior of biological regulatory networks. 1. Biological role of feedback loops and practical use of the concept of the loop-characteristic state. Bull Math Biol 57:247-276.
-
(1995)
Bull Math Biol
, vol.57
, pp. 247-276
-
-
Thomas, R.1
Thieffry, D.2
Kaufman, M.3
-
5
-
-
0034676456
-
Feedback control of intercellular signalling in development
-
Freeman M. 2000. Feedback control of intercellular signalling in development. Nature 408:313-319.
-
(2000)
Nature
, vol.408
, pp. 313-319
-
-
Freeman, M.1
-
7
-
-
0000832972
-
Evidence for a negative-feedback mechanism in the biosynthesis of isoleucine
-
Umbarger HE. 1956. Evidence for a negative-feedback mechanism in the biosynthesis of isoleucine. Science:848.
-
(1956)
Science
, pp. 848
-
-
Umbarger, H.E.1
-
10
-
-
33645073688
-
Phenotypic variation in bacteria: The role of feedback regulation
-
Smits WK, Kuipers OP, Veening JW. 2006. Phenotypic variation in bacteria: the role of feedback regulation. Nat Rev Microbiol 4:259-271.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 259-271
-
-
Smits, W.K.1
Kuipers, O.P.2
Veening, J.W.3
-
11
-
-
0016041963
-
Autogeneous regulation of gene expression
-
Goldberger RF. 1974. Autogeneous regulation of gene expression. Science 183:810-816.
-
(1974)
Science
, vol.183
, pp. 810-816
-
-
Goldberger, R.F.1
-
12
-
-
0016145568
-
Comparison of classical and autogenous systems in inducible operons
-
Savageau MA. 1974. Comparison of classical and autogenous systems in inducible operons. Nature 252:546-549.
-
(1974)
Nature
, vol.252
, pp. 546-549
-
-
Savageau, M.A.1
-
13
-
-
0016770391
-
Significance of autogenously regulated and constitutive synthesis of regulatory proteins in repressible biosynthetic systems
-
Savageau MA. 1975. Significance of autogenously regulated and constitutive synthesis of regulatory proteins in repressible biosynthetic systems. Nature 258:208-214.
-
(1975)
Nature
, vol.258
, pp. 208-214
-
-
Savageau, M.A.1
-
16
-
-
20344374152
-
Phosphatases modulate the bistable sporulation gene expression pattern in Bacillus subtilis
-
Veening JW, Hamoen LW, Kuipers OP. 2005. Phosphatases modulate the bistable sporulation gene expression pattern in Bacillus subtilis. Mol Microbiol 56:1481-1494.
-
(2005)
Mol Microbiol
, vol.56
, pp. 1481-1494
-
-
Veening, J.W.1
Hamoen, L.W.2
Kuipers, O.P.3
-
17
-
-
33845458915
-
A positive feedback loop promotes transcription surge that jump-starts Salmonella virulence circuit
-
Shin D, Lee J, Huang H, Groisman EA. 2006. A positive feedback loop promotes transcription surge that jump-starts Salmonella virulence circuit. Science 314:1607-1609.
-
(2006)
Science
, vol.314
, pp. 1607-1609
-
-
Shin, D.1
Lee, J.2
Huang, H.3
Groisman, E.A.4
-
18
-
-
44449112421
-
Specificity in two-component signal transduction pathways
-
Laub MT, Goulian M. 2007. Specificity in two-component signal transduction pathways. Annu Rev Genet 41:121-145.
-
(2007)
Annu Rev Genet
, vol.41
, pp. 121-145
-
-
Laub, M.T.1
Goulian, M.2
-
19
-
-
34249079154
-
Network motifs: Theory and experimental approaches
-
Alon U. 2007. Network motifs: theory and experimental approaches. Nat Rev Genet 8:450-461.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 450-461
-
-
Alon, U.1
-
20
-
-
33746428728
-
-
Kalir S, Mangan S, Alon U. 2005. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol 1:2005.0006.
-
Kalir S, Mangan S, Alon U. 2005. A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli. Mol Syst Biol 1:2005.0006.
-
-
-
-
21
-
-
0035875010
-
Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria
-
Kalir S, McClure J, Pabbaraju K, Southward C, Ronen M, et al. 2001. Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria. Science 292:2080-2083.
-
(2001)
Science
, vol.292
, pp. 2080-2083
-
-
Kalir, S.1
McClure, J.2
Pabbaraju, K.3
Southward, C.4
Ronen, M.5
-
22
-
-
33947394044
-
Autoregulation is essential for precise temporal and steady-state regulation by the Bordetella BvgAS phosphorelay
-
Williams CL, Cotter PA. 2007. Autoregulation is essential for precise temporal and steady-state regulation by the Bordetella BvgAS phosphorelay. J Bacteriol 189:1974-1982.
-
(2007)
J Bacteriol
, vol.189
, pp. 1974-1982
-
-
Williams, C.L.1
Cotter, P.A.2
-
23
-
-
2442526837
-
Just-in-time transcription program in metabolic pathways
-
Zaslaver A, Mayo AE, Rosenberg R, Bashkin P, Sberro H, et al. 2004. Just-in-time transcription program in metabolic pathways. Nature Genet 36:486-491.
-
(2004)
Nature Genet
, vol.36
, pp. 486-491
-
-
Zaslaver, A.1
Mayo, A.E.2
Rosenberg, R.3
Bashkin, P.4
Sberro, H.5
-
24
-
-
27144517984
-
Interlinked fast and slow positive feedback loops drive reliable cell decisions
-
Brandman O, Ferrell JE, Li R, Meyer T. 2005. Interlinked fast and slow positive feedback loops drive reliable cell decisions. Science 310:496-498.
-
(2005)
Science
, vol.310
, pp. 496-498
-
-
Brandman, O.1
Ferrell, J.E.2
Li, R.3
Meyer, T.4
-
25
-
-
33846694082
-
Coupled positive and negative feedback circuits form an essential building block of cellular signaling pathways
-
Kim D, Kwon YK, Cho KH. 2007. Coupled positive and negative feedback circuits form an essential building block of cellular signaling pathways. Bioessays 29:85-90.
-
(2007)
Bioessays
, vol.29
, pp. 85-90
-
-
Kim, D.1
Kwon, Y.K.2
Cho, K.H.3
-
26
-
-
0029021898
-
Mathematical analysis of activation thresholds in enzyme-catalyzed positive feedbacks - application to the feedbacks of blood coagulation
-
Beltrami E, Jesty J. 1995. Mathematical analysis of activation thresholds in enzyme-catalyzed positive feedbacks - application to the feedbacks of blood coagulation. Proc Natl Acad Sci USA 92:8744-8748.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 8744-8748
-
-
Beltrami, E.1
Jesty, J.2
-
27
-
-
33645293152
-
An excitable gene regulatory circuit induces transient cellular differentiation
-
Suel GM, Garcia-Ojalvo J, Liberman LM, Elowitz MB. 2006. An excitable gene regulatory circuit induces transient cellular differentiation. Nature 440:545-550.
-
(2006)
Nature
, vol.440
, pp. 545-550
-
-
Suel, G.M.1
Garcia-Ojalvo, J.2
Liberman, L.M.3
Elowitz, M.B.4
-
28
-
-
33746320813
-
Induction of competence regulons as a general response to stress in gram-positive bacteria
-
Claverys JP, Prudhomme M, Martin B. 2006. Induction of competence regulons as a general response to stress in gram-positive bacteria. Annu Rev Microbiol 60:451-475.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 451-475
-
-
Claverys, J.P.1
Prudhomme, M.2
Martin, B.3
-
29
-
-
34547604468
-
Noise in gene expression determines cell fate in Bacillus subtilis
-
Maamar H, Raj A, Dubnau D. 2007. Noise in gene expression determines cell fate in Bacillus subtilis. Science 317:526-529.
-
(2007)
Science
, vol.317
, pp. 526-529
-
-
Maamar, H.1
Raj, A.2
Dubnau, D.3
-
30
-
-
0242515913
-
The JNK cascade as a biochemical switch in mammalian cells: Ultrasensitive and all-or-none responses
-
Bagowski CP, Besser J, Frey CR, Ferrell JE. 2003. The JNK cascade as a biochemical switch in mammalian cells: Ultrasensitive and all-or-none responses. Curr Biol 13:315-320.
-
(2003)
Curr Biol
, vol.13
, pp. 315-320
-
-
Bagowski, C.P.1
Besser, J.2
Frey, C.R.3
Ferrell, J.E.4
-
31
-
-
0035822634
-
Bistabillity in the JNK cascade
-
Bagowski CP, Ferrell JE. 2001. Bistabillity in the JNK cascade. Curr Biol 11:1176-1182.
-
(2001)
Curr Biol
, vol.11
, pp. 1176-1182
-
-
Bagowski, C.P.1
Ferrell, J.E.2
-
32
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion
-
Becskei A, Seraphin B, Serrano L. 2001. Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion. Embo J 20:2528-2535.
-
(2001)
Embo J
, vol.20
, pp. 2528-2535
-
-
Becskei, A.1
Seraphin, B.2
Serrano, L.3
-
33
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla US, Iyengar R. 1999. Emergent properties of networks of biological signaling pathways. Science 283:381-387.
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
35
-
-
33748058888
-
Bistability in bacteria
-
Dubnau D, Losick R. 2006. Bistability in bacteria. Mol Microbiol 61:564-572.
-
(2006)
Mol Microbiol
, vol.61
, pp. 564-572
-
-
Dubnau, D.1
Losick, R.2
-
36
-
-
4344674786
-
Bistability analyses of a caspase activation model for receptor-induced apoptosis
-
Eissing T, Conzelmann H, Gilles ED, Allgower F, Bullinger E, Scheurich P. 2004. Bistability analyses of a caspase activation model for receptor-induced apoptosis. J Biol Chem 279:36892-36897.
-
(2004)
J Biol Chem
, vol.279
, pp. 36892-36897
-
-
Eissing, T.1
Conzelmann, H.2
Gilles, E.D.3
Allgower, F.4
Bullinger, E.5
Scheurich, P.6
-
37
-
-
0032496358
-
The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes
-
Ferrell JE, Machleder EM. 1998. The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes. Science 280:895-898.
-
(1998)
Science
, vol.280
, pp. 895-898
-
-
Ferrell, J.E.1
Machleder, E.M.2
-
38
-
-
0037605637
-
Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible
-
Ferrell JE, Xiong W. 2001. Bistability in cell signaling: How to make continuous processes discontinuous, and reversible processes irreversible. Chaos 11:227-236.
-
(2001)
Chaos
, vol.11
, pp. 227-236
-
-
Ferrell, J.E.1
Xiong, W.2
-
39
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
Gardner TS, Cantor CR, Collins JJ. 2000. Construction of a genetic toggle switch in Escherichia coli. Nature 403:339-342.
-
(2000)
Nature
, vol.403
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
40
-
-
0014318637
-
Mathematics of cellular control processes. II. Positive feedback to one gene
-
Griffith JS. 1968. Mathematics of cellular control processes. II. Positive feedback to one gene. J Theor Biol 20:209-216.
-
(1968)
J Theor Biol
, vol.20
, pp. 209-216
-
-
Griffith, J.S.1
-
41
-
-
0006092502
-
Designer gene networks: Towards fundamental cellular control
-
Hasty J, Isaacs F, Dolnik M, McMillen D, Collins JJ. 2001. Designer gene networks: Towards fundamental cellular control. Chaos 11:207-220.
-
(2001)
Chaos
, vol.11
, pp. 207-220
-
-
Hasty, J.1
Isaacs, F.2
Dolnik, M.3
McMillen, D.4
Collins, J.J.5
-
42
-
-
0037047149
-
GATA-3 transcriptional imprinting in Th2 lymphocytes: A mathematical model
-
Hofer T, Nathansen H, Lohning M, Radbruch A, Heinrich R. 2002. GATA-3 transcriptional imprinting in Th2 lymphocytes: A mathematical model. Proc Natl Acad Sci USA 99:9364-9368.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 9364-9368
-
-
Hofer, T.1
Nathansen, H.2
Lohning, M.3
Radbruch, A.4
Heinrich, R.5
-
43
-
-
33748077784
-
Bistable expression of WOR1, a master regulator of white-opaque switching in Candida albicans
-
Huang GH, Wang HF, Chou S, Nie XY, Chen JY, Liu HP. 2006. Bistable expression of WOR1, a master regulator of white-opaque switching in Candida albicans. Proc Natl Acad Sci USA 103:12813-12818.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12813-12818
-
-
Huang, G.H.1
Wang, H.F.2
Chou, S.3
Nie, X.Y.4
Chen, J.Y.5
Liu, H.P.6
-
44
-
-
33745197543
-
Signalling network with a bistable hysteretic switch controls developmental activation of the sF transcription factor in Bacillus subtilis
-
Igoshin OA, Price CW, Savageau MA. 2006. Signalling network with a bistable hysteretic switch controls developmental activation of the sF transcription factor in Bacillus subtilis. Mol Microbiol 61:165-184.
-
(2006)
Mol Microbiol
, vol.61
, pp. 165-184
-
-
Igoshin, O.A.1
Price, C.W.2
Savageau, M.A.3
-
45
-
-
3142517462
-
Topology and robustness in the Drosophila segment polarity network
-
Ingolia NT. 2004. Topology and robustness in the Drosophila segment polarity network. PLoS Biology 2:805-815.
-
(2004)
PLoS Biology
, vol.2
, pp. 805-815
-
-
Ingolia, N.T.1
-
47
-
-
33747196725
-
Multilineage transcriptional priming and determination of alternate hematopoietic cell fates
-
Laslo P, Spooner CJ, Warmflash A, Lancki DW, Lee HJ, et al. 2006. Multilineage transcriptional priming and determination of alternate hematopoietic cell fates. Cell 126:755-766.
-
(2006)
Cell
, vol.126
, pp. 755-766
-
-
Laslo, P.1
Spooner, C.J.2
Warmflash, A.3
Lancki, D.W.4
Lee, H.J.5
-
48
-
-
17644423916
-
Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop
-
Maamar H, Dubnau D. 2005. Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop. Mol Microbiol 56:615-624.
-
(2005)
Mol Microbiol
, vol.56
, pp. 615-624
-
-
Maamar, H.1
Dubnau, D.2
-
49
-
-
1442354192
-
Multistability in the lactose utilization network of Escherichia coli
-
Ozbudak EM, Thattai M, Lim HN, Shraiman BI, van Oudenaarden A. 2004. Multistability in the lactose utilization network of Escherichia coli. Nature 427:737-740.
-
(2004)
Nature
, vol.427
, pp. 737-740
-
-
Ozbudak, E.M.1
Thattai, M.2
Lim, H.N.3
Shraiman, B.I.4
van Oudenaarden, A.5
-
50
-
-
33847394655
-
MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast
-
Paliwal S, Iglesias PA, Campbell K, Hilioti Z, Groisman A, Levchenko A. 2007. MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast. Nature 446:46-51.
-
(2007)
Nature
, vol.446
, pp. 46-51
-
-
Paliwal, S.1
Iglesias, P.A.2
Campbell, K.3
Hilioti, Z.4
Groisman, A.5
Levchenko, A.6
-
51
-
-
23944469094
-
Systems-level dissection of the cell-cycle oscillator: Bypassing positive feedback produces damped oscillations
-
Pomerening JR, Kim SY, Ferrell JE. 2005. Systems-level dissection of the cell-cycle oscillator: Bypassing positive feedback produces damped oscillations. Cell 122:565-578.
-
(2005)
Cell
, vol.122
, pp. 565-578
-
-
Pomerening, J.R.1
Kim, S.Y.2
Ferrell, J.E.3
-
52
-
-
0345700833
-
Building a cell cycle oscillator: Hysteresis and bistability in the activation of Cdc2
-
Pomerening JR, Sontag ED, Ferrell JE. 2003. Building a cell cycle oscillator: hysteresis and bistability in the activation of Cdc2. Nat Cell Biol 5:346-351.
-
(2003)
Nat Cell Biol
, vol.5
, pp. 346-351
-
-
Pomerening, J.R.1
Sontag, E.D.2
Ferrell, J.E.3
-
53
-
-
0037417803
-
Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts
-
Sha W, Moore J, Chen K, Lassaletta AD, Yi CS, et al. 2003. Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts. Proc Natl Acad Sci USA 100:975-980.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 975-980
-
-
Sha, W.1
Moore, J.2
Chen, K.3
Lassaletta, A.D.4
Yi, C.S.5
-
54
-
-
0036333324
-
Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis
-
Shvartsman SY, Muratov CB, Lauffenburger DA. 2002. Modeling and computational analysis of EGF receptor-mediated cell communication in Drosophila oogenesis. Development 129:2577-2589.
-
(2002)
Development
, vol.129
, pp. 2577-2589
-
-
Shvartsman, S.Y.1
Muratov, C.B.2
Lauffenburger, D.A.3
-
55
-
-
0345255692
-
Cyclin aggregation and robustness of bio-switching
-
Slepchenko BM, Terasaki M. 2003. Cyclin aggregation and robustness of bio-switching. Mol Biol Cell 14:4695-4706.
-
(2003)
Mol Biol Cell
, vol.14
, pp. 4695-4706
-
-
Slepchenko, B.M.1
Terasaki, M.2
-
57
-
-
17644414919
-
Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development
-
Smits WK, Eschevins CC, Susanna KA, Bron S, Kuipers OP, Hamoen LW. 2005. Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development. Mol Microbiol 56:604-614.
-
(2005)
Mol Microbiol
, vol.56
, pp. 604-614
-
-
Smits, W.K.1
Eschevins, C.C.2
Susanna, K.A.3
Bron, S.4
Kuipers, O.P.5
Hamoen, L.W.6
-
58
-
-
34748882378
-
Positive feedback regulates switching of phosphate transporters in S. cerevisiae
-
Wykoff DD, Rizvi AH, Raser JM, Margolin B, O'Shea EK. 2007. Positive feedback regulates switching of phosphate transporters in S. cerevisiae. Mol Cell 27:1005-1013.
-
(2007)
Mol Cell
, vol.27
, pp. 1005-1013
-
-
Wykoff, D.D.1
Rizvi, A.H.2
Raser, J.M.3
Margolin, B.4
O'Shea, E.K.5
-
59
-
-
0345359924
-
A positive-feedback-based bistable 'memory module' that governs a cell fate decision
-
Xiong W, Ferrell JE. 2003. A positive-feedback-based bistable 'memory module' that governs a cell fate decision. Nature 426:460-465.
-
(2003)
Nature
, vol.426
, pp. 460-465
-
-
Xiong, W.1
Ferrell, J.E.2
-
60
-
-
0036532226
-
Self-perpetuating states in signal transduction: Positive feedback, double-negative feedback and bistability
-
Ferrell JE. 2002. Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability. Curr Opin Cell Biol 14:140-148.
-
(2002)
Curr Opin Cell Biol
, vol.14
, pp. 140-148
-
-
Ferrell, J.E.1
-
61
-
-
0038298805
-
Feedback regulation in the lactose operon: A mathematical modeling study and comparison with experimental data
-
Yildirim N, Mackey MC. 2003. Feedback regulation in the lactose operon: A mathematical modeling study and comparison with experimental data. Biophys J 84:2841-2851.
-
(2003)
Biophys J
, vol.84
, pp. 2841-2851
-
-
Yildirim, N.1
Mackey, M.C.2
-
62
-
-
0027716813
-
Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos
-
Novak B, Tyson JJ. 1993. Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos. J Cell Sci 106:1153-1168.
-
(1993)
J Cell Sci
, vol.106
, pp. 1153-1168
-
-
Novak, B.1
Tyson, J.J.2
-
65
-
-
34047270709
-
Control of Streptococcus pyogenes virulence: Modeling of the CovR/S signal transduction system
-
Mitrophanov AY, Churchward G, Borodovsky M. 2007. Control of Streptococcus pyogenes virulence: Modeling of the CovR/S signal transduction system. J Theor Biol 246:113-128.
-
(2007)
J Theor Biol
, vol.246
, pp. 113-128
-
-
Mitrophanov, A.Y.1
Churchward, G.2
Borodovsky, M.3
-
66
-
-
0031553215
-
Bistability without hysteresis in chemical reaction systems: A theoretical analysis of irreversible transitions between multiple steady states
-
Guidi GM, Goldbeter A. 1997. Bistability without hysteresis in chemical reaction systems: A theoretical analysis of irreversible transitions between multiple steady states. J Phys Chem A 101:9367-9376.
-
(1997)
J Phys Chem A
, vol.101
, pp. 9367-9376
-
-
Guidi, G.M.1
Goldbeter, A.2
-
67
-
-
11744330852
-
Bistability without hysteresis in chemical reaction systems: The case of nonconnected branches of coexisting steady states
-
Guidi GM, Goldbeter A. 1998. Bistability without hysteresis in chemical reaction systems: The case of nonconnected branches of coexisting steady states. J Phys Chem A 102:7813-7820.
-
(1998)
J Phys Chem A
, vol.102
, pp. 7813-7820
-
-
Guidi, G.M.1
Goldbeter, A.2
-
68
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
-
Arkin A, Ross J, McAdams HH. 1998. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 149:1633-1648.
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
69
-
-
33747174575
-
Microbial cell individuality and the underlying sources of heterogeneity
-
Avery SV. 2006. Microbial cell individuality and the underlying sources of heterogeneity. Nat Rev Microbiol 4:577-587.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 577-587
-
-
Avery, S.V.1
-
70
-
-
0032409387
-
How regulated protein translocation can produce switch-like responses
-
Ferrell JE. 1998. How regulated protein translocation can produce switch-like responses. Trends Biochem Sci 23:461-465.
-
(1998)
Trends Biochem Sci
, vol.23
, pp. 461-465
-
-
Ferrell, J.E.1
-
71
-
-
22744441386
-
Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity
-
Weinberger LS, Burnett JC, Toettcher JE, Arkin AP, Schaffer DV. 2005. Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity. Cell 122:169-182.
-
(2005)
Cell
, vol.122
, pp. 169-182
-
-
Weinberger, L.S.1
Burnett, J.C.2
Toettcher, J.E.3
Arkin, A.P.4
Schaffer, D.V.5
-
72
-
-
25444468618
-
Noise in gene expression: Origins, consequences, and control
-
Raser JM, O'Shea EK. 2005. Noise in gene expression: Origins, consequences, and control. Science 309:2010-2013.
-
(2005)
Science
, vol.309
, pp. 2010-2013
-
-
Raser, J.M.1
O'Shea, E.K.2
-
73
-
-
33846796149
-
Microbial phenotypic heterogeneity and antibiotic tolerance
-
Dhar N, McKinney JD. 2007. Microbial phenotypic heterogeneity and antibiotic tolerance. Curr Opin Microbiol 10:30-38.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 30-38
-
-
Dhar, N.1
McKinney, J.D.2
-
74
-
-
33947270897
-
Basal expression rate of comK sets a 'switching-window' into the K-state of Bacillus subtilis
-
Leisner M, Stingl K, Radler JO, Maier B. 2007. Basal expression rate of comK sets a 'switching-window' into the K-state of Bacillus subtilis. Mol Microbiol 63:1806-1816.
-
(2007)
Mol Microbiol
, vol.63
, pp. 1806-1816
-
-
Leisner, M.1
Stingl, K.2
Radler, J.O.3
Maier, B.4
-
75
-
-
0035048054
-
A ComGA-dependent checkpoint limits growth during the escape from competence
-
Haijema BJ, Hahn J, Haynes J, Dubnau D. 2001. A ComGA-dependent checkpoint limits growth during the escape from competence. Mol Microbiol 40:52-64.
-
(2001)
Mol Microbiol
, vol.40
, pp. 52-64
-
-
Haijema, B.J.1
Hahn, J.2
Haynes, J.3
Dubnau, D.4
-
76
-
-
0025572247
-
Cyclin activation of p34cdc2
-
Solomon MJ, Glotzer M, Lee TH, Philippe M, Kirschner MW. 1990. Cyclin activation of p34cdc2. Cell 63:1013-1024.
-
(1990)
Cell
, vol.63
, pp. 1013-1024
-
-
Solomon, M.J.1
Glotzer, M.2
Lee, T.H.3
Philippe, M.4
Kirschner, M.W.5
-
77
-
-
0035926571
-
Regulation of the eukaryotic cell cycle: Molecular antagonism, hysteresis, and irreversible transitions
-
Tyson JJ, Novak B. 2001. Regulation of the eukaryotic cell cycle: Molecular antagonism, hysteresis, and irreversible transitions. J Theor Biol 210:249-263.
-
(2001)
J Theor Biol
, vol.210
, pp. 249-263
-
-
Tyson, J.J.1
Novak, B.2
-
78
-
-
0026006671
-
A minimal cascade model for the mitotic oscillator involving cyclin and Cdc2 kinase
-
Goldbeter A. 1991. A minimal cascade model for the mitotic oscillator involving cyclin and Cdc2 kinase. Proc Natl Acad Sci USA 88:9107-9111.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 9107-9111
-
-
Goldbeter, A.1
-
79
-
-
0033985570
-
Kinetic analysis of a molecular model of the budding yeast cell cycle
-
Chen KC, Csikasz-Nagy A, Gyorffy B, Val J, Novak B, Tyson JJ. 2000. Kinetic analysis of a molecular model of the budding yeast cell cycle. Mol Biol Cell 11:369-391.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 369-391
-
-
Chen, K.C.1
Csikasz-Nagy, A.2
Gyorffy, B.3
Val, J.4
Novak, B.5
Tyson, J.J.6
-
80
-
-
0037079015
-
Computational approaches to cellular rhythms
-
Goldbeter A. 2002. Computational approaches to cellular rhythms. Nature 420:238-245.
-
(2002)
Nature
, vol.420
, pp. 238-245
-
-
Goldbeter, A.1
-
81
-
-
0032485813
-
From bistability to oscillations in a model for the isocitrate dehydrogenase reaction
-
Guidi GM, Goldbeter A. 1998. From bistability to oscillations in a model for the isocitrate dehydrogenase reaction. Biophys Chem 72:201-210.
-
(1998)
Biophys Chem
, vol.72
, pp. 201-210
-
-
Guidi, G.M.1
Goldbeter, A.2
-
82
-
-
0034688220
-
Biological rhythms - Circadian clocks limited by noise
-
Barkai N, Leibler S. 2000. Biological rhythms - Circadian clocks limited by noise. Nature 403:267-268.
-
(2000)
Nature
, vol.403
, pp. 267-268
-
-
Barkai, N.1
Leibler, S.2
-
83
-
-
37549018348
-
Ordered phosphorylation governs oscillation of a three-protein circadian clock
-
Rust MJ, Markson JS, Lane WS, Fisher DS, O'Shea EK. 2007. Ordered phosphorylation governs oscillation of a three-protein circadian clock. Science 318:809-812.
-
(2007)
Science
, vol.318
, pp. 809-812
-
-
Rust, M.J.1
Markson, J.S.2
Lane, W.S.3
Fisher, D.S.4
O'Shea, E.K.5
-
88
-
-
0033635880
-
Evolution of two-component signal transduction
-
Koretke KK, Lupas AN, Warren PV, Rosenberg M, Brown JR. 2000. Evolution of two-component signal transduction. Mol Biol Evol 17:1956-1970.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1956-1970
-
-
Koretke, K.K.1
Lupas, A.N.2
Warren, P.V.3
Rosenberg, M.4
Brown, J.R.5
-
89
-
-
0031855362
-
Development of competence in Streptococcus pneumoniae: Pheromone autoinduction and control of quorum sensing by the oligopeptide permease
-
Alloing G, Martin B, Granadel C, Claverys JP. 1998. Development of competence in Streptococcus pneumoniae: pheromone autoinduction and control of quorum sensing by the oligopeptide permease. Mol Microbiol 29:75-83.
-
(1998)
Mol Microbiol
, vol.29
, pp. 75-83
-
-
Alloing, G.1
Martin, B.2
Granadel, C.3
Claverys, J.P.4
-
90
-
-
33645050677
-
The vancomycin resistance VanRS two-component signal transduction system of Streptomyces coelicolor
-
Hutchings MI, Hong HJ, Buttner MJ. 2006. The vancomycin resistance VanRS two-component signal transduction system of Streptomyces coelicolor. Mol Microbiol 59:923-935.
-
(2006)
Mol Microbiol
, vol.59
, pp. 923-935
-
-
Hutchings, M.I.1
Hong, H.J.2
Buttner, M.J.3
-
91
-
-
8844247972
-
Analysis of two-component signal transduction by mathematical modeling using the KdpD/KdpE system of Escherichia coli
-
Kremling A, Heermann R, Centler F, Jung K, Gilles ED. 2004. Analysis of two-component signal transduction by mathematical modeling using the KdpD/KdpE system of Escherichia coli. Biosystems 78:23-37.
-
(2004)
Biosystems
, vol.78
, pp. 23-37
-
-
Kremling, A.1
Heermann, R.2
Centler, F.3
Jung, K.4
Gilles, E.D.5
-
92
-
-
16244398023
-
Transcriptional response of Escherichia coli to external copper
-
Yamamoto K, Ishihama A. 2005. Transcriptional response of Escherichia coli to external copper. Mol Microbiol 56:215-227.
-
(2005)
Mol Microbiol
, vol.56
, pp. 215-227
-
-
Yamamoto, K.1
Ishihama, A.2
-
93
-
-
0035105303
-
The pleiotropic two-component regulatory system PhoP-PhoQ
-
Groisman EA. 2001. The pleiotropic two-component regulatory system PhoP-PhoQ. J Bacteriol 183:1835-1842.
-
(2001)
J Bacteriol
, vol.183
, pp. 1835-1842
-
-
Groisman, E.A.1
-
94
-
-
0141941680
-
Making informed decisions: Regulatory interactions between two-component systems
-
Bijisma JJE, Groisman EA. 2003. Making informed decisions: regulatory interactions between two-component systems. Trends Microbiol 11:359-366.
-
(2003)
Trends Microbiol
, vol.11
, pp. 359-366
-
-
Bijisma, J.J.E.1
Groisman, E.A.2
-
95
-
-
0034897157
-
Autoamplification of a two-component regulatory system results in "learning" behavior
-
Hoffer SM, Westerhoff HV, Hellingwerf KJ, Postma PW, Tommassen J. 2001. Autoamplification of a two-component regulatory system results in "learning" behavior. J Bacteriol 183:4914-4917.
-
(2001)
J Bacteriol
, vol.183
, pp. 4914-4917
-
-
Hoffer, S.M.1
Westerhoff, H.V.2
Hellingwerf, K.J.3
Postma, P.W.4
Tommassen, J.5
-
96
-
-
36549089092
-
A yeast catabolic enzyme controls transcriptional memory
-
Zacharioudakis I, Gligoris T, Tzamarias D. 2007. A yeast catabolic enzyme controls transcriptional memory. Curr Biol 17:2041-2046.
-
(2007)
Curr Biol
, vol.17
, pp. 2041-2046
-
-
Zacharioudakis, I.1
Gligoris, T.2
Tzamarias, D.3
-
97
-
-
0025597009
-
Positive transcriptional feedback at the bvg locus controls expression of virulence factors in Bordetella pertussis
-
Scarlato V, Prugnola A, Arico B, Rappuoli R. 1990. Positive transcriptional feedback at the bvg locus controls expression of virulence factors in Bordetella pertussis. Proc Natl Acad Sci USA 87:6753-6757.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 6753-6757
-
-
Scarlato, V.1
Prugnola, A.2
Arico, B.3
Rappuoli, R.4
-
98
-
-
0142027814
-
Structure and function of the feed-forward loop network motif
-
Mangan S, Alon U. 2003. Structure and function of the feed-forward loop network motif. Proc Natl Acad Sci USA 100:11980-11985.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 11980-11985
-
-
Mangan, S.1
Alon, U.2
-
99
-
-
34547551186
-
A connector of two-component regulatory systems promotes signal amplification and persistence of expression
-
Kato A, Mitrophanov AY, Groisman EA. 2007. A connector of two-component regulatory systems promotes signal amplification and persistence of expression. Proc Natl Acad Sci USA 104:12063-12068.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 12063-12068
-
-
Kato, A.1
Mitrophanov, A.Y.2
Groisman, E.A.3
-
100
-
-
0038392724
-
Response delays and the structure of transcription networks
-
Rosenfeld N, Alon U. 2003. Response delays and the structure of transcription networks. J Mol Biol 329:645-654.
-
(2003)
J Mol Biol
, vol.329
, pp. 645-654
-
-
Rosenfeld, N.1
Alon, U.2
-
102
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
De Jong H. 2002. Modeling and simulation of genetic regulatory systems: a literature review. J Comp Biol 9:67-103.
-
(2002)
J Comp Biol
, vol.9
, pp. 67-103
-
-
De Jong, H.1
-
105
-
-
1242274449
-
Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feed back systems
-
Angeli D, Ferrell JE, Sontag ED. 2004. Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feed back systems. Proc Natl Acad Sci USA 101:1822-1827.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 1822-1827
-
-
Angeli, D.1
Ferrell, J.E.2
Sontag, E.D.3
-
106
-
-
0028968021
-
Model genetic circuits encoding autoregulatory transcription factors
-
Keller AD. 1995. Model genetic circuits encoding autoregulatory transcription factors. J Theor Biol 172:169-185.
-
(1995)
J Theor Biol
, vol.172
, pp. 169-185
-
-
Keller, A.D.1
-
107
-
-
0034696445
-
How to make a biological switch
-
Cherry JL, Adler FR. 2000. How to make a biological switch. J Theor Biol 203:117-133.
-
(2000)
J Theor Biol
, vol.203
, pp. 117-133
-
-
Cherry, J.L.1
Adler, F.R.2
-
109
-
-
34047262163
-
Stochastic gene expression: From single molecules to the proteome
-
Kaufmann BB, van Oudenaarden A. 2007. Stochastic gene expression: from single molecules to the proteome. Curr Opin Gen Dev 17:107-112.
-
(2007)
Curr Opin Gen Dev
, vol.17
, pp. 107-112
-
-
Kaufmann, B.B.1
van Oudenaarden, A.2
|