-
1
-
-
0842303307
-
Unraveling V(D)J recombination: Insights into gene regulation
-
Jung, D. & Alt, F. W. Unraveling V(D)J recombination: Insights into gene regulation. Cell 116, 299-311 (2004).
-
(2004)
Cell
, vol.116
, pp. 299-311
-
-
Jung, D.1
Alt, F.W.2
-
2
-
-
0036152242
-
Mechanism and control of class-switch recombination
-
Manis, J. P., Tian, M. & Alt, F. W. Mechanism and control of class-switch recombination. Trends Immunol. 23, 31-39 (2002).
-
(2002)
Trends Immunol.
, vol.23
, pp. 31-39
-
-
Manis, J.P.1
Tian, M.2
Alt, F.W.3
-
3
-
-
0036212917
-
Molecular mechanism of class switch recombination: Linkage with somatic hypermutation
-
Honjo, T., Kinoshita, K. & Muramatsu, M. Molecular mechanism of class switch recombination: linkage with somatic hypermutation. Anna. Rev. Immunol. 20, 165-196 (2002).
-
(2002)
Anna. Rev. Immunol.
, vol.20
, pp. 165-196
-
-
Honjo, T.1
Kinoshita, K.2
Muramatsu, M.3
-
4
-
-
0036234455
-
Somatic hypermutation of immunoglobulin genes: Merging mechanisms for genetic diversity
-
Papavasiliou, F. N. & Schatz, D. G. Somatic hypermutation of immunoglobulin genes: merging mechanisms for genetic diversity. Cell 109, S35-S44 (2002).
-
(2002)
Cell
, vol.109
-
-
Papavasiliou, F.N.1
Schatz, D.G.2
-
5
-
-
0347758541
-
The generation of antibody diversity through somatic hypermutation and class switch recombination
-
Li, Z., Woo, C. J., Iglesias-Ussel, M. D., Ronai, D. & Scharff, M. D. The generation of antibody diversity through somatic hypermutation and class switch recombination. Genes Dev. 18, 1-11 (2004).
-
(2004)
Genes Dev.
, vol.18
, pp. 1-11
-
-
Li, Z.1
Woo, C.J.2
Iglesias-Ussel, M.D.3
Ronai, D.4
Scharff, M.D.5
-
6
-
-
3142765336
-
Class switch recombination: Interplay of transcription, DNA deamination and DNA repair
-
Chaudhuri, J. & Alt, F. W. Class switch recombination: interplay of transcription, DNA deamination and DNA repair. Nature Rev. Immunol 4, 541-552 (2004).
-
(2004)
Nature Rev. Immunol.
, vol.4
, pp. 541-552
-
-
Chaudhuri, J.1
Alt, F.W.2
-
7
-
-
0034268780
-
Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme
-
Muramatsu, M. et al. Class switch recombination and hypermutation require activation-induced cytidine deaminase (AID), a potential RNA editing enzyme. Cell 102, 553-563 (2000).
-
(2000)
Cell
, vol.102
, pp. 553-563
-
-
Muramatsu, M.1
-
8
-
-
0034264851
-
Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2)
-
Revy, P. et al. Activation-induced cytidine deaminase (AID) deficiency causes the autosomal recessive form of the Hyper-IgM syndrome (HIGM2). Cell 102, 565-575 (2000).
-
(2000)
Cell
, vol.102
, pp. 565-575
-
-
Revy, P.1
-
9
-
-
0027227311
-
Discriminating intrinsic and antigen-selected mutational hotspots in immunoglobulin V genes
-
Betz, A.G., Neuberger, M. S. & Milstein, C. Discriminating intrinsic and antigen-selected mutational hotspots in immunoglobulin V genes. Immunol. Today 14, 405-411 (1993).
-
(1993)
Immunol. Today
, vol.14
, pp. 405-411
-
-
Betz, A.G.1
Neuberger, M.S.2
Milstein, C.3
-
10
-
-
0031920157
-
Monitoring and interpreting the intrinsic features of somatic hypermutation
-
Neuberger, M. S. et al. Monitoring and interpreting the intrinsic features of somatic hypermutation. Immunol. Rev. 162, 107-116 (1998).
-
(1998)
Immunol. Rev.
, vol.162
, pp. 107-116
-
-
Neuberger, M.S.1
-
11
-
-
0037195272
-
Immunoglobulin genes: Generating diversity with AID and UNG
-
Storb, U. & Stavnezer, J. Immunoglobulin genes: generating diversity with AID and UNG. Curr. Biol. 12, 725-727 (2002).
-
(2002)
Curr. Biol.
, vol.12
, pp. 725-727
-
-
Storb, U.1
Stavnezer, J.2
-
12
-
-
0242268033
-
Nucleic acid structures and enzymes in the immunoglobulin class switch recombination mechanism
-
Yu, K. & Lieber, M. R. Nucleic acid structures and enzymes in the immunoglobulin class switch recombination mechanism. DNA Repair 2, 1163-1174 (2003).
-
(2003)
DNA Repair
, vol.2
, pp. 1163-1174
-
-
Yu, K.1
Lieber, M.R.2
-
13
-
-
0346362489
-
Transcription-coupled events associating with immunoglobulin switch region chromatin
-
Nambu, Y. et al. Transcription-coupled events associating with immunoglobulin switch region chromatin. Science 302, 2137-2140 (2003).
-
(2003)
Science
, vol.302
, pp. 2137-2140
-
-
Nambu, Y.1
-
14
-
-
0037452080
-
Transcription-targeted DNA deamination by the AID antibody diversification enzyme
-
Chaudhuri, J. et al. Transcription-targeted DNA deamination by the AID antibody diversification enzyme. Nature 422, 726-730 (2003).
-
(2003)
Nature
, vol.422
, pp. 726-730
-
-
Chaudhuri, J.1
-
15
-
-
0037561998
-
AID mediates hypermutation by deaminating single stranded DNA
-
Dickerson, S. K., Market, E., Besmer, E. & Papavasiliou, F. N. AID mediates hypermutation by deaminating single stranded DNA. J. Exp. Med. 197, 1291-1296 (2003).
-
(2003)
J. Exp. Med.
, vol.197
, pp. 1291-1296
-
-
Dickerson, S.K.1
Market, E.2
Besmer, E.3
Papavasiliou, F.N.4
-
16
-
-
0037388165
-
Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase
-
Bransteitter, R., Pham, P., Scharff, M. D. & Goodman, M. F. Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase. Proc. Natl Acad. Sci. USA 100, 4102-4107 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 4102-4107
-
-
Bransteitter, R.1
Pham, P.2
Scharff, M.D.3
Goodman, M.F.4
-
17
-
-
0037901850
-
Human activation-induced cytidine deaminase causes transcription- dependent, strand-biased C to U deaminations
-
Sohail, A., Klapacz, J., Samaranayake, M., Ullah, A. & Bhagwat, A. S. Human activation-induced cytidine deaminase causes transcription-dependent, strand-biased C to U deaminations. Nucleic Acids Res. 31, 2990-2994 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2990-2994
-
-
Sohail, A.1
Klapacz, J.2
Samaranayake, M.3
Ullah, A.4
Bhagwat, A.S.5
-
18
-
-
0037019315
-
AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification
-
Petersen-Mahrt, S. K., Harris, R. S. & Neuberger, M. S. AID mutates E. coli suggesting a DNA deamination mechanism for antibody diversification. Nature 418, 99-103 (2002).
-
(2002)
Nature
, vol.418
, pp. 99-103
-
-
Petersen-Mahrt, S.K.1
Harris, R.S.2
Neuberger, M.S.3
-
19
-
-
0034604622
-
Transcription-induced cleavage of immunoglobulin switch regions by nucleotide excision repair nucleases in vitro
-
Tian, M. & Alt, F. W. Transcription-induced cleavage of immunoglobulin switch regions by nucleotide excision repair nucleases in vitro. J. Biol. Chem. 275, 24163-24172 (2000).
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 24163-24172
-
-
Tian, M.1
Alt, F.W.2
-
20
-
-
0037650190
-
R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells
-
Yu, K., Chedin, E, Hsieh, C. L., Wilson, T. E. & Lieber, M. R. R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells. Nature Immunol. 4, 442-451 (2003).
-
(2003)
Nature Immunol.
, vol.4
, pp. 442-451
-
-
Yu, K.1
Chedin, E.2
Hsieh, C.L.3
Wilson, T.E.4
Lieber, M.R.5
-
21
-
-
0037926476
-
Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation
-
Pham, P., Bransteitter, R., Petruska, J. & Goodman, M. F. Processive AID-catalysed cytosine deamination on single-stranded DNA simulates somatic hypermutation. Nature 424,103-107 (2003).
-
(2003)
Nature
, vol.424
, pp. 103-107
-
-
Pham, P.1
Bransteitter, R.2
Petruska, J.3
Goodman, M.F.4
-
22
-
-
0038664358
-
The influence of transcriptional orientation on endogenous switch region function
-
Shinkura, R. et al. The influence of transcriptional orientation on endogenous switch region function. Nature Immunol. 4, 435-441 (2003).
-
(2003)
Nature Immunol.
, vol.4
, pp. 435-441
-
-
Shinkura, R.1
-
23
-
-
0031920677
-
Cis-acting sequences that affect somatic hypermutation of Ig genes
-
Storb, U. et al. Cis-acting sequences that affect somatic hypermutation of Ig genes. Immunol. Rev. 162, 153-160 (1998).
-
(1998)
Immunol. Rev.
, vol.162
, pp. 153-160
-
-
Storb, U.1
-
24
-
-
0028270307
-
Elements regulating somatic hypermutation of an immunoglobulin kappa gene: Critical role for the intron enhancer/matrix attachment region
-
Betz, A. G. et al. Elements regulating somatic hypermutation of an immunoglobulin kappa gene: critical role for the intron enhancer/matrix attachment region. Cell 77, 239-248 (1994).
-
(1994)
Cell
, vol.77
, pp. 239-248
-
-
Betz, A.G.1
-
25
-
-
0030063726
-
Somatic hypermutation of immunoglobulin genes is linked to transcription initiation
-
Peters, A. & Storb, U. Somatic hypermutation of immunoglobulin genes is linked to transcription initiation. Immunity 4, 57-65 (1996).
-
(1996)
Immunity
, vol.4
, pp. 57-65
-
-
Peters, A.1
Storb, U.2
-
26
-
-
0032127810
-
Somatic hypermutation in the heavy chain locus correlates with transcription
-
Fukita, Y., Jacobs, H. & Rajewsky, K. Somatic hypermutation in the heavy chain locus correlates with transcription. Immunity 9, 105-114 (1998).
-
(1998)
Immunity
, vol.9
, pp. 105-114
-
-
Fukita, Y.1
Jacobs, H.2
Rajewsky, K.3
-
27
-
-
0029067875
-
Targeting of non-Ig sequences in place of the V segment by somatic hypermutation
-
Yelamos, J. et al. Targeting of non-Ig sequences in place of the V segment by somatic hypermutation. Nature 376, 225-229 (1995).
-
(1995)
Nature
, vol.376
, pp. 225-229
-
-
Yelamos, J.1
-
28
-
-
13144259651
-
BCL-6 mutations in normal germinal center B cells: Evidence of somatic hypermutation acting outside Ig loci
-
Pasqualucci, L. et al. BCL-6 mutations in normal germinal center B cells: evidence of somatic hypermutation acting outside Ig loci. Proc. Natl Acad. Sci. USA 95, 11816-11821 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 11816-11821
-
-
Pasqualucci, L.1
-
29
-
-
2642623612
-
Mutation of BCL-6 gene in normal B cells by the process of somatic hypermutation of Ig genes
-
Shen, H. M., Peters, A., Baron, B., Zhu, X. & Storb, U. Mutation of BCL-6 gene in normal B cells by the process of somatic hypermutation of Ig genes. Science 280, 1750-1752 (1998).
-
(1998)
Science
, vol.280
, pp. 1750-1752
-
-
Shen, H.M.1
Peters, A.2
Baron, B.3
Zhu, X.4
Storb, U.5
-
30
-
-
0036169650
-
Effects of sequence and structure on the hypermutability of immunoglobulin genes
-
Michael, N. et al. Effects of sequence and structure on the hypermutability of immunoglobulin genes. Immunity 16, 123-134 (2002).
-
(2002)
Immunity
, vol.16
, pp. 123-134
-
-
Michael, N.1
-
31
-
-
0041381361
-
AID mutant analyses indicate requirement for class-switch-specific cofactors
-
Ta, V. T. et al. AID mutant analyses indicate requirement for class-switch-specific cofactors. Nature Immunol. 4, 843-848 (2003).
-
(2003)
Nature Immunol.
, vol.4
, pp. 843-848
-
-
Ta, V.T.1
-
32
-
-
0023140133
-
Replication of simian virus 40 origin-containing DNA in vitro with purified proteins
-
Wobbe, C. R. et al. Replication of simian virus 40 origin-containing DNA in vitro with purified proteins. Proc. Natl Acad. Sci. USA 84, 1834-1838 (1987).
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 1834-1838
-
-
Wobbe, C.R.1
-
33
-
-
0023992803
-
Purification and characterization of replication protein A, a cellular protein required for in vitro replication of simian virus 40 DNA
-
Wold, M. S. & Kelly, T. Purification and characterization of replication protein A, a cellular protein required for in vitro replication of simian virus 40 DNA. Proc. Natl Acad. Sci. USA 85, 2523-2527 (1988).
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2523-2527
-
-
Wold, M.S.1
Kelly, T.2
-
34
-
-
1842311742
-
Cellular factors required for multiple stages of SV40 DNA replication in vitro
-
Fairman, M. P. & Stillman, B. Cellular factors required for multiple stages of SV40 DNA replication in vitro. EMBO J. 7, 1211-1218 (1988).
-
(1988)
EMBO J.
, vol.7
, pp. 1211-1218
-
-
Fairman, M.P.1
Stillman, B.2
-
35
-
-
0030908093
-
Replication protein A: A heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism
-
Wold, M. S. Replication protein A: a heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism. Annu. Rev. Biochem. 66, 61-92 (1997).
-
(1997)
Annu. Rev. Biochem.
, vol.66
, pp. 61-92
-
-
Wold, M.S.1
-
36
-
-
1342282983
-
DNA substrate length and surrounding sequence affect the activation-induced deaminase activity at cytidine
-
Yu, K., Huang, F. T. & Lieber, M. R. DNA substrate length and surrounding sequence affect the activation-induced deaminase activity at cytidine. J. Biol. Chem. 279, 6496-6500 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6496-6500
-
-
Yu, K.1
Huang, F.T.2
Lieber, M.R.3
-
37
-
-
17544367892
-
Replication protein A confers structure-specific endonuclease activities to the XPF-ERCC1 and XPG subunits of human DNA repair excision nuclease
-
Matsunaga, T., Park, C. H., Bessho, T., Mu, D. & Sancar, A. Replication protein A confers structure-specific endonuclease activities to the XPF-ERCC1 and XPG subunits of human DNA repair excision nuclease. J. Biol. Chem. 271, 11047-11050 (1996).
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 11047-11050
-
-
Matsunaga, T.1
Park, C.H.2
Bessho, T.3
Mu, D.4
Sancar, A.5
-
38
-
-
0030996226
-
A sequence in the N-terminal region of human uracil-DNA glycosylase with homology to XPA interacts with the C-terminal part of the 34-kDa subunit of replication protein A
-
Nagelhus, T. A. et al. A sequence in the N-terminal region of human uracil-DNA glycosylase with homology to XPA interacts with the C-terminal part of the 34-kDa subunit of replication protein A. J. Biol. Chem. 272, 6561-6566 (1997).
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 6561-6566
-
-
Nagelhus, T.A.1
-
39
-
-
0035067615
-
Palindromic but not G-rich sequences are targets of class switch recombination
-
Tashiro, J., Kinoshita, K. & Honjo, T. Palindromic but not G-rich sequences are targets of class switch recombination. Int. Immunol. 13, 495-505 (2001).
-
(2001)
Int. Immunol.
, vol.13
, pp. 495-505
-
-
Tashiro, J.1
Kinoshita, K.2
Honjo, T.3
-
40
-
-
0032555232
-
Both DNA strands of antibody genes are hypermutation targets
-
Milstein, C., Neuberger, M. S. & Staden, R. Both DNA strands of antibody genes are hypermutation targets. Proc. Natl. Acad. Sci. USA 95, 8791-8794 (1998).
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 8791-8794
-
-
Milstein, C.1
Neuberger, M.S.2
Staden, R.3
-
41
-
-
0038293484
-
Transcription enhances AID-mediated cytidine deamination by exposing single-stranded DNA on the nontemplate strand
-
Ramiro, A. R., Stavropoulos, P., Jankovic, M. & Nussenzweig, M. C. Transcription enhances AID-mediated cytidine deamination by exposing single-stranded DNA on the nontemplate strand. Nature Immunol. 4, 452-456 (2003).
-
(2003)
Nature Immunol.
, vol.4
, pp. 452-456
-
-
Ramiro, A.R.1
Stavropoulos, P.2
Jankovic, M.3
Nussenzweig, M.C.4
-
42
-
-
0037133970
-
The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand
-
Artsimovitch, I. & Landick, R. The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand. Cell 109, 193-203 (2002).
-
(2002)
Cell
, vol.109
, pp. 193-203
-
-
Artsimovitch, I.1
Landick, R.2
-
43
-
-
1342302799
-
The structural basis of the transition from initiation to elongation phases of transcription, as well as translocation and strand separation, by T7 RNA polymerase
-
Steitz, T. A. The structural basis of the transition from initiation to elongation phases of transcription, as well as translocation and strand separation, by T7 RNA polymerase. Curr. Opin. Struct. Biol. 14, 4-9 (2004).
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 4-9
-
-
Steitz, T.A.1
-
44
-
-
2942691957
-
Antisense intergenic transcription in V(D)J recombination
-
Bolland, D. J. et al. Antisense intergenic transcription in V(D)J recombination. Nature Immunol. 5, 630-637 (2004).
-
(2004)
Nature Immunol.
, vol.5
, pp. 630-637
-
-
Bolland, D.J.1
-
45
-
-
15844390393
-
A human RNA polymerase II complex associated with SRB and DNA-repair proteins
-
Maldonado, E. et al. A human RNA polymerase II complex associated with SRB and DNA-repair proteins. Nature 381, 86-89 (1996).
-
(1996)
Nature
, vol.381
, pp. 86-89
-
-
Maldonado, E.1
-
46
-
-
0037076967
-
AID enzyme-induced hypermutation in an actively transcribed gene in fibroblasts
-
Yoshikawa, K. et al. AID enzyme-induced hypermutation in an actively transcribed gene in fibroblasts. Science 296, 2033-2036 (2002).
-
(2002)
Science
, vol.296
, pp. 2033-2036
-
-
Yoshikawa, K.1
-
47
-
-
0037126038
-
Somatic hypermutation of the AID transgene in B and non-B cells
-
Martin, A. & Scharff, M. D. Somatic hypermutation of the AID transgene in B and non-B cells. Proc. Natl Acad. Sci. USA 99, 12304-12308 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12304-12308
-
-
Martin, A.1
Scharff, M.D.2
-
48
-
-
0037026482
-
Altering the pathway of immunoglobulin hypermutation by inhibiting uracil-DNA glycosylase
-
Di Noia, J. & Neuberger, M. S. Altering the pathway of immunoglobulin hypermutation by inhibiting uracil-DNA glycosylase. Nature 419, 43-48 (2002).
-
(2002)
Nature
, vol.419
, pp. 43-48
-
-
Di Noia, J.1
Neuberger, M.S.2
-
49
-
-
0037108463
-
Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice
-
Rada, C. et al. Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice. Curr. Biol. 12, 1748-1755 (2002).
-
(2002)
Curr. Biol.
, vol.12
, pp. 1748-1755
-
-
Rada, C.1
-
50
-
-
0028245269
-
Recombinant replication protein A: Expression, complex formation, and functional characterization
-
Henricksen, L. A., Umbricht, C. B. & Wold, M. S. Recombinant replication protein A: expression, complex formation, and functional characterization. J. Biol. Chem. 269, 11121-11132 (1994).
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 11121-11132
-
-
Henricksen, L.A.1
Umbricht, C.B.2
Wold, M.S.3
|