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U. Storb, in The Biology of Germinal Centers in Lymphoid Tissues, G. J. T. and V. K. Tsiagbe, Eds. (Landes, Austin, TX, in press).
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The Biology of Germinal Centers in Lymphoid Tissues
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7
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2642608501
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note
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+ B cells (Table 1) are unlikely to have undergone somatic mutation.
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8
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2642676706
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B cells were pelleted and resuspended, and one volume of 2X DNA lysis buffer [proteinase K (1 mg/ml), 100 mM EDTA (pH 8.0), 2% SDS, and 100 mM tris (pH 8.0)] was added. The lysate was incubated at 37°C overnight. DNAs were extracted twice with phenol and then twice with phenol/chloroform/isoamyl alcohol (25:24:1). DNAs were precipitated with ethanol, pelleted, and dissolved in distilled water
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B cells were pelleted and resuspended, and one volume of 2X DNA lysis buffer [proteinase K (1 mg/ml), 100 mM EDTA (pH 8.0), 2% SDS, and 100 mM tris (pH 8.0)] was added. The lysate was incubated at 37°C overnight. DNAs were extracted twice with phenol and then twice with phenol/chloroform/isoamyl alcohol (25:24:1). DNAs were precipitated with ethanol, pelleted, and dissolved in distilled water.
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9
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2642616034
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note
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We used the following primers: BCL-6 gene primers, 5′-GCTCTAGACCGCTGCTCATGATCATTAT-TT(sense), 5′-CGGGGTACCTAGACACGATACT-TCATCTCAT (antisense) or 5′-CCGCTGCTCAT-GATCATTATTT (sense), 5′-TAGACACGATACT-TCATCTCAT (antisense); c-MYC gene primers, 5′-CCGGTACCCTTGCCGCATCCACGAAACTTT (sense), 5′-GCTCTAGAGACCCAGGTTTTA (antisense); S14 gene primers, 5′-CGGGGTACCCGG-GACAGACGTGGGCTCCCG (sense), GCTCTAG-ATCTAAGGGAGAGAGAAACTGAC (antisense); AFP gene primers, 5′-GGATGAATGGTTTGTA-TGTTTC (sense), GGTTTGACTCATGAGATTTC (antisense). PCR conditions for BCL-6, c-MYC, and AFP were 94°C for 5 min, 57°C for 30 s, 75°C for 1 min, 1 cycle; 94°C for 30 s, 57°C for 30 s, 75°C for 1 min, 29 cycles; and 75°C for 6 min, 1 cycle. PCR conditions for S14 were 95°C for 5 min, 67°C for 30 s, 75°C for 1 min, 1 cycle; 95°C for 30 s, 67°C for 30 s, 75°C for 1 min, 29 cycles; and 75°C for 6 min, 1 cycle.
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10
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0021278366
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Rabkin, C.5
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12
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2642641936
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BCL-6 DNA fragments from memory B cells were inserted into pBluescript KS at Kpn I and Xba I sites, and the other gene fragments and BCL-6 from naive B cells were inserted into the Srf I site in pBluescript SK according to manufacturer's instructions (Strategene). Plasmids with the inserts were transformed into Escherichia coli JH3
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BCL-6 DNA fragments from memory B cells were inserted into pBluescript KS at Kpn I and Xba I sites, and the other gene fragments and BCL-6 from naive B cells were inserted into the Srf I site in pBluescript SK according to manufacturer's instructions (Strategene). Plasmids with the inserts were transformed into Escherichia coli JH3.
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13
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2642704855
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Automated sequencing was done for all amplified gene fragments. Manual sequencing was performed to confirm some mutations. Sequences were aligned with the data from GenBank and (25) by MacVector4.14 to find mutations
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Automated sequencing was done for all amplified gene fragments. Manual sequencing was performed to confirm some mutations. Sequences were aligned with the data from GenBank and (25) by MacVector4.14 to find mutations.
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14
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2642683032
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5 bp per cycle (26). Thus, for 30 cycles, roughly one mutation in 26,000 bp would be expected
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5 bp per cycle (26). Thus, for 30 cycles, roughly one mutation in 26,000 bp would be expected.
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15
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2642646899
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Compared with the GenBank sequences, many changes were seen in BCL-6 in all four donors and in S14 donor A
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Compared with the GenBank sequences, many changes were seen in BCL-6 in all four donors and in S14 donor A.
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17
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2642683031
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H4 family genes were sequenced from positions 130 to 296 of V. Seven of the nine genes were mutated with 5 to 24 mutations per 167 nucleotides
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H4 family genes were sequenced from positions 130 to 296 of V. Seven of the nine genes were mutated with 5 to 24 mutations per 167 nucleotides.
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18
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0001180652
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A. Migliazza et al., Blood 90 (suppl. 1, pt. 1), 177a (1997).
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2642650947
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U. Storb et al., in preparation
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U. Storb et al., in preparation.
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0023132009
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2642713165
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Supported by NIH grant GM38649 to U.S. A.P. was partly supported by NIH training grant GM07183. We thank T. McKeithan, T. E. Martin, N. Michael, and P. Engler for critical reading of the manuscript
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Supported by NIH grant GM38649 to U.S. A.P. was partly supported by NIH training grant GM07183. We thank T. McKeithan, T. E. Martin, N. Michael, and P. Engler for critical reading of the manuscript.
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