-
1
-
-
0034721164
-
Error and attack tolerance of complex networks
-
Albert R., Jeong H., and Barabasi A.-L. Error and attack tolerance of complex networks. Nature 406 (2000) 378-382
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.-L.3
-
2
-
-
1542288938
-
Global organization of metabolic fluxes in the bacterium Escherichia coli
-
Almaas E., Kovacs B., Vicsek T., Oltvai Z.N., and Barabasi A.-L. Global organization of metabolic fluxes in the bacterium Escherichia coli. Nature 427 (2004) 839-843
-
(2004)
Nature
, vol.427
, pp. 839-843
-
-
Almaas, E.1
Kovacs, B.2
Vicsek, T.3
Oltvai, Z.N.4
Barabasi, A.-L.5
-
3
-
-
1242319556
-
The metabolic word of Escherichia coli is not small
-
Arita M. The metabolic word of Escherichia coli is not small. Proc. Natl. Acad. Sci. 101 6 (2004) 1543-1547
-
(2004)
Proc. Natl. Acad. Sci.
, vol.101
, Issue.6
, pp. 1543-1547
-
-
Arita, M.1
-
4
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabási A.-L., and Albert R. Emergence of scaling in random networks. Science 286 (1999) 509-512
-
(1999)
Science
, vol.286
, pp. 509-512
-
-
Barabási, A.-L.1
Albert, R.2
-
5
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
Barabási A.-L., and Oltvai Z.N. Network biology: understanding the cell's functional organization. Nat. Rev. Genet. 5 (2004) 101-113
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 101-113
-
-
Barabási, A.-L.1
Oltvai, Z.N.2
-
6
-
-
0036286631
-
Energy balance for analysis of complex metabolic networks
-
Beard D.A., Liang S., and Qian H. Energy balance for analysis of complex metabolic networks. Biophys. J. 83 1 (2002) 79-86
-
(2002)
Biophys. J.
, vol.83
, Issue.1
, pp. 79-86
-
-
Beard, D.A.1
Liang, S.2
Qian, H.3
-
7
-
-
0033555859
-
Emergent properties of networks of biological signaling pathways
-
Bhalla U.S., and Iyengar R. Emergent properties of networks of biological signaling pathways. Science 283 (1999) 381-387
-
(1999)
Science
, vol.283
, pp. 381-387
-
-
Bhalla, U.S.1
Iyengar, R.2
-
8
-
-
20344365760
-
The origin of correlations in metabolomics data
-
Camacho D., de la Fuente A., and Mendes P. The origin of correlations in metabolomics data. Metabolomics 1 (2005) 53-63
-
(2005)
Metabolomics
, vol.1
, pp. 53-63
-
-
Camacho, D.1
de la Fuente, A.2
Mendes, P.3
-
9
-
-
0035824029
-
Regulation of gene expression in flux balance models of metabolism
-
Covert M.W., Schilling C.H., and Palsson B. Regulation of gene expression in flux balance models of metabolism. J. Theor. Biol. 213 1 (2001) 73-88
-
(2001)
J. Theor. Biol.
, vol.213
, Issue.1
, pp. 73-88
-
-
Covert, M.W.1
Schilling, C.H.2
Palsson, B.3
-
10
-
-
0036500834
-
Reverse engineering of biological complexity
-
Csete M.E., and Doyle J.C. Reverse engineering of biological complexity. Science 295 (2002) 1664-1669
-
(2002)
Science
, vol.295
, pp. 1664-1669
-
-
Csete, M.E.1
Doyle, J.C.2
-
11
-
-
0033581959
-
Sustained oscillations in living cells
-
Danø S., Sørensen P.G., and Hynne F. Sustained oscillations in living cells. Nature 402 (1999) 320-322
-
(1999)
Nature
, vol.402
, pp. 320-322
-
-
Danø, S.1
Sørensen, P.G.2
Hynne, F.3
-
12
-
-
33846910173
-
Global reconstruction of the human metabolic network based on genomic and bibliomic data
-
Duarte N.C., Becker S.A., Jamshidi N., Thiele I., Mo M.L., Vo T.D., Srivas R., and Palsson B. Global reconstruction of the human metabolic network based on genomic and bibliomic data. Proc. Natl. Acad. Sci. USA 104 6 (2007) 1777-1782
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, Issue.6
, pp. 1777-1782
-
-
Duarte, N.C.1
Becker, S.A.2
Jamshidi, N.3
Thiele, I.4
Mo, M.L.5
Vo, T.D.6
Srivas, R.7
Palsson, B.8
-
13
-
-
0034625143
-
The Escherichia coli mg1655 in silico metabolic genotype: its definition, characteristics, and capabilities
-
Edwards J.S., and Palsson B.O. The Escherichia coli mg1655 in silico metabolic genotype: its definition, characteristics, and capabilities. Proc. Natl. Acad. Sci. 97 10 (2000) 5528-5533
-
(2000)
Proc. Natl. Acad. Sci.
, vol.97
, Issue.10
, pp. 5528-5533
-
-
Edwards, J.S.1
Palsson, B.O.2
-
14
-
-
0344824417
-
Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network
-
Famili I., Förster J., Nielsen J., and Palsson B.O. Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network. Proc. Natl. Acad. Sci. 100 23 (2003) 13134-13139
-
(2003)
Proc. Natl. Acad. Sci.
, vol.100
, Issue.23
, pp. 13134-13139
-
-
Famili, I.1
Förster, J.2
Nielsen, J.3
Palsson, B.O.4
-
16
-
-
0033764169
-
The small world of metabolism
-
Fell D.A., and Wagner A. The small world of metabolism. Nat. Biotechnol. 18 (2000) 1121-1122
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1121-1122
-
-
Fell, D.A.1
Wagner, A.2
-
17
-
-
0037605637
-
Bistability in cell signaling: how to make continuous processes discontinuous, and reversible processes irreversible
-
Ferrell Jr. J.E., and Xiong W. Bistability in cell signaling: how to make continuous processes discontinuous, and reversible processes irreversible. Chaos 11 1 (2001) 227-236
-
(2001)
Chaos
, vol.11
, Issue.1
, pp. 227-236
-
-
Ferrell Jr., J.E.1
Xiong, W.2
-
18
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Förster J., Famili I., Fu P., Palsson B.O., and Nielsen J. Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res. 13 (2003) 244-253
-
(2003)
Genome Res.
, vol.13
, pp. 244-253
-
-
Förster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
Nielsen, J.5
-
19
-
-
0034676456
-
Feedback control of intercellular signaling in development
-
Freeman M. Feedback control of intercellular signaling in development. Nat. Rev. 408 (2000) 313-319
-
(2000)
Nat. Rev.
, vol.408
, pp. 313-319
-
-
Freeman, M.1
-
20
-
-
0038281450
-
Hierarchical analysis of dependency in metabolic networks
-
Gagneur J., Jackson D.B., and Casari G. Hierarchical analysis of dependency in metabolic networks. Bioinformatics 19 8 (2003) 1027-1034
-
(2003)
Bioinformatics
, vol.19
, Issue.8
, pp. 1027-1034
-
-
Gagneur, J.1
Jackson, D.B.2
Casari, G.3
-
21
-
-
0023049002
-
Oscillatory response of photosynthesis in leaves to environmental perturbations: a mathematical model
-
Giersch C. Oscillatory response of photosynthesis in leaves to environmental perturbations: a mathematical model. Arch. Biochem. Biophys. 245 1 (1986) 263-270
-
(1986)
Arch. Biochem. Biophys.
, vol.245
, Issue.1
, pp. 263-270
-
-
Giersch, C.1
-
23
-
-
0037079015
-
Computational approaches to cellular rhythms
-
Goldbeter A. Computational approaches to cellular rhythms. Nature 420 (2002) 238-245
-
(2002)
Nature
, vol.420
, pp. 238-245
-
-
Goldbeter, A.1
-
24
-
-
1942470073
-
Metabolomics by numbers: acquiring and understanding global metabolite data
-
Goodacre R., Vaidyanathan S., Dunn W.B., Harrigan G.G., and Kell D.B. Metabolomics by numbers: acquiring and understanding global metabolite data. Trends Biotechnol. 22 (2004) 245-252
-
(2004)
Trends Biotechnol.
, vol.22
, pp. 245-252
-
-
Goodacre, R.1
Vaidyanathan, S.2
Dunn, W.B.3
Harrigan, G.G.4
Kell, D.B.5
-
25
-
-
0015989446
-
A linear steady-state treatment of enzymatic chains. General properties, control and effector strength
-
Heinrich R., and Rapoport T.A. A linear steady-state treatment of enzymatic chains. General properties, control and effector strength. Eur. J. Biochem. 42 (1974) 89-95
-
(1974)
Eur. J. Biochem.
, vol.42
, pp. 89-95
-
-
Heinrich, R.1
Rapoport, T.A.2
-
28
-
-
0037345719
-
Subnetwork hierarchies of biochemical pathways
-
Holme P., Huss M., and Jeong H. Subnetwork hierarchies of biochemical pathways. Bioinformatics 19 4 (2003) 532-538
-
(2003)
Bioinformatics
, vol.19
, Issue.4
, pp. 532-538
-
-
Holme, P.1
Huss, M.2
Jeong, H.3
-
29
-
-
3242795003
-
The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks
-
Holzhütter H.-G. The principle of flux minimization and its application to estimate stationary fluxes in metabolic networks. Eur. J. Biochem. 271 14 (2004) 2905-2922
-
(2004)
Eur. J. Biochem.
, vol.271
, Issue.14
, pp. 2905-2922
-
-
Holzhütter, H.-G.1
-
30
-
-
33845368513
-
Copasi - a complex pathway simulator
-
Hoops S., Sahle S., Gauges R., Lee C., Pahle J., Simus N., Singhal M., Xu L., Mendes P., and Kummer U. Copasi - a complex pathway simulator. Bioinformatics 22 (2006) 3067-3074.
-
(2006)
Bioinformatics
, vol.22
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Gauges, R.3
Lee, C.4
Pahle, J.5
Simus, N.6
Singhal, M.7
Xu, L.8
Mendes, P.9
Kummer, U.10
-
31
-
-
33745780500
-
Network motifs: structure does not determine function
-
Ingram P.J., Stumpf M.P.H., and Stark J. Network motifs: structure does not determine function. BMC Genomics 7 (2006) 108
-
(2006)
BMC Genomics
, vol.7
, pp. 108
-
-
Ingram, P.J.1
Stumpf, M.P.H.2
Stark, J.3
-
32
-
-
4544227574
-
Toward large-scale modeling of the microbial cell for computer simulation
-
Ishii N., Robert M., Nakayama Y., Kanai A., and Tomita M. Toward large-scale modeling of the microbial cell for computer simulation. J. Biotechnol. 113 (2004) 281-294
-
(2004)
J. Biotechnol.
, vol.113
, pp. 281-294
-
-
Ishii, N.1
Robert, M.2
Nakayama, Y.3
Kanai, A.4
Tomita, M.5
-
33
-
-
0034609791
-
The large-scale organization of metabolic network
-
Jeong H., Tombor B., Albert R., Oltvai Z.N., and Barabási A.-L. The large-scale organization of metabolic network. Nature 407 (2000) 651-654
-
(2000)
Nature
, vol.407
, pp. 651-654
-
-
Jeong, H.1
Tombor, B.2
Albert, R.3
Oltvai, Z.N.4
Barabási, A.-L.5
-
36
-
-
33846068019
-
Dry work in a wet world: computations in systems biology
-
msb4100080
-
Khalem P., and Birney E. Dry work in a wet world: computations in systems biology. Mol. Syst. Biol. (2006) msb4100080
-
(2006)
Mol. Syst. Biol.
-
-
Khalem, P.1
Birney, E.2
-
37
-
-
0004243729
-
-
Kitano H. (Ed), MIT Press, Cambridge
-
In: Kitano H. (Ed). Foundations of Systems Biology (2001), MIT Press, Cambridge
-
(2001)
Foundations of Systems Biology
-
-
-
38
-
-
7644238181
-
Biological robustness
-
Kitano H. Biological robustness. Nat. Rev. Genet. 5 (2004) 826-837
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 826-837
-
-
Kitano, H.1
-
39
-
-
33746927955
-
News and views: international alliances for quantitative modeling in systems biology
-
msb4100011
-
Kitano H. News and views: international alliances for quantitative modeling in systems biology. Mol. Syst. Biol. (2005) E1-E2 msb4100011
-
(2005)
Mol. Syst. Biol.
-
-
Kitano, H.1
-
40
-
-
32144453095
-
Generalized concept of minimal cut sets in biochemical networks
-
Klamt S. Generalized concept of minimal cut sets in biochemical networks. Biosystems 83 2-3 (2006) 233-247
-
(2006)
Biosystems
, vol.83
, Issue.2-3
, pp. 233-247
-
-
Klamt, S.1
-
41
-
-
1042269472
-
Minimal cut sets in biochemical reaction networks
-
Klamt S., and Gilles E.D. Minimal cut sets in biochemical reaction networks. Bioinformatics 20 2 (2004) 226-234
-
(2004)
Bioinformatics
, vol.20
, Issue.2
, pp. 226-234
-
-
Klamt, S.1
Gilles, E.D.2
-
42
-
-
0037308505
-
Two approaches for metabolic pathway analysis
-
Klamt S., and Stelling J. Two approaches for metabolic pathway analysis. Trends Biotechnol. 21 2 (2003) 64-69
-
(2003)
Trends Biotechnol.
, vol.21
, Issue.2
, pp. 64-69
-
-
Klamt, S.1
Stelling, J.2
-
43
-
-
0037197159
-
Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria
-
Klamt S., Schuster S., and Gilles E.D. Calculability analysis in underdetermined metabolic networks illustrated by a model of the central metabolism in purple nonsulfur bacteria. Biotechnol. Bioeng. 77 7 (2002) 734-751
-
(2002)
Biotechnol. Bioeng.
, vol.77
, Issue.7
, pp. 734-751
-
-
Klamt, S.1
Schuster, S.2
Gilles, E.D.3
-
44
-
-
34447551397
-
Structural and functional analysis of cellular networks with cellnetanalyzer
-
Klamt S., Saez-Rodriguez J., and Gilles E.D. Structural and functional analysis of cellular networks with cellnetanalyzer. BMC Syst. Biol. 1 (2007) 2.
-
(2007)
BMC Syst. Biol.
, vol.1
, pp. 2
-
-
Klamt, S.1
Saez-Rodriguez, J.2
Gilles, E.D.3
-
45
-
-
18244406832
-
Inferring dynamic properties of biochemical reaction networks from structural knowledge
-
Klipp E., Liebermeister W., and Wierling C. Inferring dynamic properties of biochemical reaction networks from structural knowledge. Genome Inform. Ser. 15 1 (2004) 125-137
-
(2004)
Genome Inform. Ser.
, vol.15
, Issue.1
, pp. 125-137
-
-
Klipp, E.1
Liebermeister, W.2
Wierling, C.3
-
46
-
-
33745433792
-
Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data
-
2006.0034
-
Kümmel A., Panke S., and Heinemann M. Putative regulatory sites unraveled by network-embedded thermodynamic analysis of metabolome data. Mol. Syst. Biol. 2 (2006) 2006.0034
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Kümmel, A.1
Panke, S.2
Heinemann, M.3
-
47
-
-
0001349267
-
Control of phosphate turnover as a rate-limiting factor and possible source of oscillations in photosynthesis, a mathematical model
-
Laisk A., and Walker D.A. Control of phosphate turnover as a rate-limiting factor and possible source of oscillations in photosynthesis, a mathematical model. Proc. R. Soc. London B 227 (1986) 281-302
-
(1986)
Proc. R. Soc. London B
, vol.227
, pp. 281-302
-
-
Laisk, A.1
Walker, D.A.2
-
48
-
-
0033230728
-
Multistability: a major means of differentiation and evolution in biological systems
-
Laurent M., and Kellershohn N. Multistability: a major means of differentiation and evolution in biological systems. Trends Biochem. Sci. 24 11 (1999) 418-422
-
(1999)
Trends Biochem. Sci.
, vol.24
, Issue.11
, pp. 418-422
-
-
Laurent, M.1
Kellershohn, N.2
-
49
-
-
0346463223
-
Essentially and damage in metabolic networks
-
Lemke N., Herédia F., Barcellos C.K., dos Reis A.N., and Mombach J.C.M. Essentially and damage in metabolic networks. Bioinformatics 20 1 (2004) 115-119
-
(2004)
Bioinformatics
, vol.20
, Issue.1
, pp. 115-119
-
-
Lemke, N.1
Herédia, F.2
Barcellos, C.K.3
dos Reis, A.N.4
Mombach, J.C.M.5
-
50
-
-
33846647495
-
Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
-
10.1186/1742-4682-3-4
-
Liebermeister W., and Klipp E. Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data. Theor. Biol. Med. Modell. 3 42 (2006) 10.1186/1742-4682-3-4
-
(2006)
Theor. Biol. Med. Modell.
, vol.3
, Issue.42
-
-
Liebermeister, W.1
Klipp, E.2
-
51
-
-
0035478586
-
The virtual cell: a software environment for computational cell biology
-
Loew L.M., and Schaff J.C. The virtual cell: a software environment for computational cell biology. TRENDS Biotechnol. 19 10 (2001) 401-406
-
(2001)
TRENDS Biotechnol.
, vol.19
, Issue.10
, pp. 401-406
-
-
Loew, L.M.1
Schaff, J.C.2
-
52
-
-
0037316239
-
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
-
Ma H., and Zeng A.-P. Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. Bioinformatics 19 2 (2003) 270-277
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 270-277
-
-
Ma, H.1
Zeng, A.-P.2
-
54
-
-
0034636310
-
The diversity-stability debate
-
(insight review)
-
McCann K.S. The diversity-stability debate. Nature 405 (2000) 228-233 (insight review)
-
(2000)
Nature
, vol.405
, pp. 228-233
-
-
McCann, K.S.1
-
55
-
-
28844432005
-
Modelling and simulations for metabolomics data analysis
-
Mendes P., Camacho D., and de la Fuente A. Modelling and simulations for metabolomics data analysis. Biochem. Soc. Trans. 33 6 (2005) 1427-1429
-
(2005)
Biochem. Soc. Trans.
, vol.33
, Issue.6
, pp. 1427-1429
-
-
Mendes, P.1
Camacho, D.2
de la Fuente, A.3
-
56
-
-
0036336088
-
Mathematical modeling of plant metabolic pathways
-
Morgan J.A., and Rhodes D. Mathematical modeling of plant metabolic pathways. Metab. Eng. 4 (2002) 80-89
-
(2002)
Metab. Eng.
, vol.4
, pp. 80-89
-
-
Morgan, J.A.1
Rhodes, D.2
-
57
-
-
32044454046
-
Metabolomic networks in plants: transitions from pattern recognition to biological interpretation
-
Morgenthal K., Weckwerth W., and Steuer R. Metabolomic networks in plants: transitions from pattern recognition to biological interpretation. BioSystems 83 2-3 (2006) 108-117
-
(2006)
BioSystems
, vol.83
, Issue.2-3
, pp. 108-117
-
-
Morgenthal, K.1
Weckwerth, W.2
Steuer, R.3
-
58
-
-
0036301511
-
Robustness as a measure of plausibility in models of biochemical networks
-
Morohashi M., Winn A.E., Borisuk M.T., Bolouri H., Doyle J., and Kitano H. Robustness as a measure of plausibility in models of biochemical networks. J. Theor. Biol. 216 (2002) 19-30
-
(2002)
J. Theor. Biol.
, vol.216
, pp. 19-30
-
-
Morohashi, M.1
Winn, A.E.2
Borisuk, M.T.3
Bolouri, H.4
Doyle, J.5
Kitano, H.6
-
59
-
-
4544344218
-
Web-based kinetic modelling using jws online
-
Olivier B.G., and Snoep J.L. Web-based kinetic modelling using jws online. Bioinformatics 20 (2004) 2143-2144. http://jjj.biochem.sun.ac.za/database/
-
(2004)
Bioinformatics
, vol.20
, pp. 2143-2144
-
-
Olivier, B.G.1
Snoep, J.L.2
-
60
-
-
33645831564
-
Commentary: a hidden metabolic pathway exposed
-
Osterman A. Commentary: a hidden metabolic pathway exposed. Proc. Natl. Acad. Sci. USA 103 15 (2006) 5637-5638
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, Issue.15
, pp. 5637-5638
-
-
Osterman, A.1
-
61
-
-
0033764285
-
The challenges of in silico biology
-
Palsson B.O. The challenges of in silico biology. Nat. Biotechnol. 18 (2000) 1147-1150
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1147-1150
-
-
Palsson, B.O.1
-
62
-
-
0035989610
-
In silico biology through 'omics'
-
Palsson B. In silico biology through 'omics'. Nat. Biotechnol. 20 (2002) 649-650
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 649-650
-
-
Palsson, B.1
-
63
-
-
0037727678
-
Metabolic pathways in the post-genome era
-
Papin J.A., Price N.D., Wiback S.J., Fell D.A., and Palsson B.O. Metabolic pathways in the post-genome era. Trends Biochem. Sci. 28 (2003) 250-258
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 250-258
-
-
Papin, J.A.1
Price, N.D.2
Wiback, S.J.3
Fell, D.A.4
Palsson, B.O.5
-
64
-
-
3342925846
-
Comparison of network-based pathway analysis methods
-
Papin J.A., Stelling J., Price N.D., Klamt S., Schuster S., and Palsson B.O. Comparison of network-based pathway analysis methods. Trends Biotechnol. 22 8 (2004) 400-405
-
(2004)
Trends Biotechnol.
, vol.22
, Issue.8
, pp. 400-405
-
-
Papin, J.A.1
Stelling, J.2
Price, N.D.3
Klamt, S.4
Schuster, S.5
Palsson, B.O.6
-
65
-
-
0037317848
-
Elementary modes analysis of photosynthate metabolism in the chloroplast stroma
-
10.1046/j.1432-1033.2003.03390
-
Poolman M.G., Fell D.A., and Raines C.A. Elementary modes analysis of photosynthate metabolism in the chloroplast stroma. Eur. J. Biochem. 270 (2003) 430-439 10.1046/j.1432-1033.2003.03390
-
(2003)
Eur. J. Biochem.
, vol.270
, pp. 430-439
-
-
Poolman, M.G.1
Fell, D.A.2
Raines, C.A.3
-
66
-
-
0142186707
-
Network-based analysis of metabolic regulation in the human red blood cell
-
Price N.D., Reed J.L., Papin J.A., Wiback S.J., and Palsson B.O. Network-based analysis of metabolic regulation in the human red blood cell. J. Theor. Biol. 225 (2003) 185-194
-
(2003)
J. Theor. Biol.
, vol.225
, pp. 185-194
-
-
Price, N.D.1
Reed, J.L.2
Papin, J.A.3
Wiback, S.J.4
Palsson, B.O.5
-
67
-
-
27844551326
-
Dynamic properties of network motifs contribute to biological network organization
-
Prill R.J., Iglesias P.A., and Levchenko A. Dynamic properties of network motifs contribute to biological network organization. PLoS Biol. 3 11 (2005) 1881-1892
-
(2005)
PLoS Biol.
, vol.3
, Issue.11
, pp. 1881-1892
-
-
Prill, R.J.1
Iglesias, P.A.2
Levchenko, A.3
-
68
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
Ravasz E., Somera A.L., Mongru D.A., Oltvai Z.N., and Barabási A.-L. Hierarchical organization of modularity in metabolic networks. Science 297 (2002) 1551-1555
-
(2002)
Science
, vol.297
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabási, A.-L.5
-
69
-
-
0036678794
-
Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics
-
Ronen M., Rosenberg R., Shraiman B.I., and Alon U. Assigning numbers to the arrows: parameterizing a gene regulation network by using accurate expression kinetics. Proc. Natl. Acad. Sci. USA 99 16 (2002) 10555-10560
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.16
, pp. 10555-10560
-
-
Ronen, M.1
Rosenberg, R.2
Shraiman, B.I.3
Alon, U.4
-
70
-
-
0036428761
-
Negative autoregulation speeds the response times of transcription networks
-
Rosenfeld N., Elowitz M., and Alon U. Negative autoregulation speeds the response times of transcription networks. J. Mol. Biol. (2002) 785-793
-
(2002)
J. Mol. Biol.
, pp. 785-793
-
-
Rosenfeld, N.1
Elowitz, M.2
Alon, U.3
-
71
-
-
0025859085
-
Identification of possible two-reactant sources of oscillations in the Calvin photosynthesis cycle and ancillary pathways
-
Ryde-Petterson U. Identification of possible two-reactant sources of oscillations in the Calvin photosynthesis cycle and ancillary pathways. Eur. J. Biochem. 198 (1991) 613-619
-
(1991)
Eur. J. Biochem.
, vol.198
, pp. 613-619
-
-
Ryde-Petterson, U.1
-
72
-
-
1242306261
-
High-throughput phenomics: experimental methods for mapping fluxomes
-
Sauer U. High-throughput phenomics: experimental methods for mapping fluxomes. Curr. Opin. Biotechnol. 15 1 (2004) 58-63
-
(2004)
Curr. Opin. Biotechnol.
, vol.15
, Issue.1
, pp. 58-63
-
-
Sauer, U.1
-
73
-
-
0033136109
-
Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era
-
Schilling C.H., Schuster S., Palsson B.O., and Heinrich R. Metabolic pathway analysis: basic concepts and scientific applications in the post-genomic era. Biotechnol. Prog. 15 (1999) 296-303
-
(1999)
Biotechnol. Prog.
, vol.15
, pp. 296-303
-
-
Schilling, C.H.1
Schuster, S.2
Palsson, B.O.3
Heinrich, R.4
-
74
-
-
0034064689
-
A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic systems
-
Schuster S., Fell D.A., and Dandekar T. A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic systems. Nat. Biotechnol. 18 (2000) 326-332
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 326-332
-
-
Schuster, S.1
Fell, D.A.2
Dandekar, T.3
-
75
-
-
0036188159
-
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to mycoplasma pneumoniae
-
Schuster S., Pfeiffer T., Moldenhauer F., Koch I., and Dandekar T. Exploring the pathway structure of metabolism: decomposition into subnetworks and application to mycoplasma pneumoniae. Bioinformatics 18 2 (2002) 351-361
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 351-361
-
-
Schuster, S.1
Pfeiffer, T.2
Moldenhauer, F.3
Koch, I.4
Dandekar, T.5
-
76
-
-
0016829888
-
Stabilization of energy charge, generation of oscillation and multiple steady states in energy metabolism as a result of purely stoichiometric regulation
-
Selkov E.E. Stabilization of energy charge, generation of oscillation and multiple steady states in energy metabolism as a result of purely stoichiometric regulation. Eur. J. Biochem. 59 (1975) 151-157
-
(1975)
Eur. J. Biochem.
, vol.59
, pp. 151-157
-
-
Selkov, E.E.1
-
77
-
-
0142219725
-
Quantitative cell biology with the virtual cell
-
Slepchenko B.M., Schaff J.C., Macara I., and Loew L.M. Quantitative cell biology with the virtual cell. TRENDS Cell Biol. 13 11 (2003) 570-577
-
(2003)
TRENDS Cell Biol.
, vol.13
, Issue.11
, pp. 570-577
-
-
Slepchenko, B.M.1
Schaff, J.C.2
Macara, I.3
Loew, L.M.4
-
78
-
-
20444411533
-
The silicon cell initiative: working towards a detailed kinetic description at the cellular level
-
Snoep J.L. The silicon cell initiative: working towards a detailed kinetic description at the cellular level. Curr. Opin. Biotechnol. 16 (2005) 336-343
-
(2005)
Curr. Opin. Biotechnol.
, vol.16
, pp. 336-343
-
-
Snoep, J.L.1
-
79
-
-
0037079050
-
Metabolic network structure determines key aspects of functionality and regulation
-
Stelling J., Klamt S., Bettenbrock K., Schuster S., and Gilles E.D. Metabolic network structure determines key aspects of functionality and regulation. Nature 420 (2002) 190-193
-
(2002)
Nature
, vol.420
, pp. 190-193
-
-
Stelling, J.1
Klamt, S.2
Bettenbrock, K.3
Schuster, S.4
Gilles, E.D.5
-
80
-
-
4544346660
-
Robustness of cellular function
-
Stelling J., Sauer U., Szallasi Z., Doyle III F.J., and Doyle J. Robustness of cellular function. Cell 118 (2004) 675-685
-
(2004)
Cell
, vol.118
, pp. 675-685
-
-
Stelling, J.1
Sauer, U.2
Szallasi, Z.3
Doyle III, F.J.4
Doyle, J.5
-
81
-
-
5044237367
-
Exploiting biological complexity for strain improvement through systems biology
-
Stephanopoulos G.N., Alper H., and Moxley J. Exploiting biological complexity for strain improvement through systems biology. Nat. Biotechnol. 22 (2004) 1261-1267
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 1261-1267
-
-
Stephanopoulos, G.N.1
Alper, H.2
Moxley, J.3
-
82
-
-
33748475897
-
On the analysis and interpretation of correlations in metabolomic data
-
Steuer R. On the analysis and interpretation of correlations in metabolomic data. Brief. Bioinform. 7 2 (2006) 151-158
-
(2006)
Brief. Bioinform.
, vol.7
, Issue.2
, pp. 151-158
-
-
Steuer, R.1
-
83
-
-
33747061013
-
Structural kinetic modeling of metabolic networks
-
Steuer R., Gross T., Selbig J., and Blasius B. Structural kinetic modeling of metabolic networks. Proc. Natl. Acad. Sci. USA 103 32 (2006) 11868-11873
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, Issue.32
, pp. 11868-11873
-
-
Steuer, R.1
Gross, T.2
Selbig, J.3
Blasius, B.4
-
84
-
-
0038281453
-
Observing and interpreting correlations in metabolomic networks
-
Steuer R., Kurths J., Fiehn O., and Weckwerth W. Observing and interpreting correlations in metabolomic networks. Bioinformatics 19 8 (2003) 1019-1026
-
(2003)
Bioinformatics
, vol.19
, Issue.8
, pp. 1019-1026
-
-
Steuer, R.1
Kurths, J.2
Fiehn, O.3
Weckwerth, W.4
-
85
-
-
34447314196
-
From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle
-
10.1093/bioinformatics/btm065 (advance access)
-
Steuer R., Nunes-Nesi A., Fernie A.R., Gross T., Blasius B., and Selbig J. From structure to dynamics of metabolic pathways: application to the plant mitochondrial TCA cycle. Bioinformatics (2007) 10.1093/bioinformatics/btm065 (advance access)
-
(2007)
Bioinformatics
-
-
Steuer, R.1
Nunes-Nesi, A.2
Fernie, A.R.3
Gross, T.4
Blasius, B.5
Selbig, J.6
-
86
-
-
0345270397
-
Plant metabolomics: large-scale phytochemistry in the functional genomics era
-
Sumner L.W., Mendes P., and Dixon R. Plant metabolomics: large-scale phytochemistry in the functional genomics era. Phytochemistry 62 (2003) 817-836
-
(2003)
Phytochemistry
, vol.62
, pp. 817-836
-
-
Sumner, L.W.1
Mendes, P.2
Dixon, R.3
-
87
-
-
32944461132
-
Regulation of metabolic networks: understanding metabolic complexity in the systems biology era
-
Sweetlove L.J., and Fernie A.R. Regulation of metabolic networks: understanding metabolic complexity in the systems biology era. New Phytologist 168 (2005) 9-24
-
(2005)
New Phytologist
, vol.168
, pp. 9-24
-
-
Sweetlove, L.J.1
Fernie, A.R.2
-
88
-
-
0033031386
-
E-cell: software environment for whole-cell simulation
-
Tomita M., Hashimoto K., Takahashi K., Shimizu T.S., Matsuzaki Y., Miyoshi F., Saito K., Tanida S., Yugi K., Venter J.C., and Hutchison III C.A. E-cell: software environment for whole-cell simulation. Bioinformatics 15 1 (1999) 72-84
-
(1999)
Bioinformatics
, vol.15
, Issue.1
, pp. 72-84
-
-
Tomita, M.1
Hashimoto, K.2
Takahashi, K.3
Shimizu, T.S.4
Matsuzaki, Y.5
Miyoshi, F.6
Saito, K.7
Tanida, S.8
Yugi, K.9
Venter, J.C.10
Hutchison III, C.A.11
-
89
-
-
0025826876
-
Modeling the cell division cycle: cdc2 and cyclin interactions
-
Tyson J.J. Modeling the cell division cycle: cdc2 and cyclin interactions. Proc. Natl. Acad. Sci. USA 88 (1991) 7328-7332
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 7328-7332
-
-
Tyson, J.J.1
-
91
-
-
0037376655
-
Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell
-
Tyson J.J., Chen K.C., and Novak B. Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr. Opin. Cell Biol. 15 (2003) 221-231
-
(2003)
Curr. Opin. Cell Biol.
, vol.15
, pp. 221-231
-
-
Tyson, J.J.1
Chen, K.C.2
Novak, B.3
-
92
-
-
0028108519
-
Review: metabolic flux balancing: basic concepts, scientific and practical use
-
Varma A., and Palsson B.O. Review: metabolic flux balancing: basic concepts, scientific and practical use. Bio/Technology (now Nat. Biotechnol.) 12 (1994) 994-998
-
(1994)
Bio/Technology (now Nat. Biotechnol.)
, vol.12
, pp. 994-998
-
-
Varma, A.1
Palsson, B.O.2
-
93
-
-
0035823264
-
The small world inside large metabolic networks
-
Wagner A., and Fell D.A. The small world inside large metabolic networks. Proc. R. Soc. Lond. B 268 (2001) 1803-1810
-
(2001)
Proc. R. Soc. Lond. B
, vol.268
, pp. 1803-1810
-
-
Wagner, A.1
Fell, D.A.2
-
94
-
-
33644807093
-
Feedback dynamics and cell function: why systems biology is called systems biology
-
Wolkenhauer O., and Mesarovic M. Feedback dynamics and cell function: why systems biology is called systems biology. Mol. Biosyst. 1 1 (2005) 14-16
-
(2005)
Mol. Biosyst.
, vol.1
, Issue.1
, pp. 14-16
-
-
Wolkenhauer, O.1
Mesarovic, M.2
|