The metabolic world of Escherichia coli is not small

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 6, 2004, Pages 1543-1547

  Arita, Masanori ^a,b  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

Bioinformatics; Metabolism; Small world network

Indexed keywords

ARTICLE; BACTERIAL METABOLISM; BIODEGRADATION; BIOSYNTHESIS; ENZYME ACTIVITY; ESCHERICHIA COLI; METABOLITE; NONHUMAN; PRIORITY JOURNAL; REACTION ANALYSIS; SIGNAL TRANSDUCTION;

ESCHERICHIA COLI;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 1242319556     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0306458101     Document Type: Article

References (26)

1. Watts, D. J. & Strogatz, S. H. (1998) Nature 393, 440-442.
2. Strogatz, S. H. (2001) Nature 410, 268-276.
3. Girvan, M. & Newman, M. E. (2002) Proc. Natl. Acad. Sci. USA 99, 7821-7826.
4. Fell, D. A. & Wagner, A. (2000) Nat. Biotechnol. 18, 1121-1122.
5. Wagner, A. & Fell, D. A. (2001) Proc. R. Soc London Ser. B 268, 1803-1810.
6. Ravasz, E., Somera, A. L., Mongru, D. A., Oltvai, Z. N. & Barabási, A. L. (2002) Science 297, 1551-1555.
7. Jeong, H., Tombor, B., Albert, R., Oltvai, Z. N. & Barabási, A. L. (2000) Nature 407, 651-654.
8. Ma, H.-W. & Zeng, A.-P. (2003) Bioinformatics 19, 270-277.
9. Ma, H.-W. & Zeng, A.-P. (2003) Bioinformatics 19, 1423-1430.
10. Arita, M. (2003) Genome Res. 13, 2455-2466.
11. Kanehisa, M., Goto, S., Kawashima, S. & Nakaya, A. (2002) Nucleic Acids Res. 30, 42-46.
12. Karp, P. D., Riley, M., Saier, M., Paulsen, I. T., Collado-Vides, J., Paley, S. M., Pellegrini-Toole, A., Bonavides, C. & Gama-Castro, S. (2002) Nucleic Acids Res. 30, 56-58.
13. Schomburg, I., Chang, A., Hofmann, O., Ebeling, C., Ehrentreich, F. & Schomburg, D. (2002) Trends Biochem. Sci. 27, 54-56.
14. International Union of Biochemistry and Molecular Biology (1992) Enzyme Nomenclature 1992 (Academic, San Diego).
15. Michal, G., ed. (1999) Biochemical Pathways. An Atlas of Biochemistry and Molecular Biology (Wiley & Spektrum, Heidelberg).
16. Dalby, A., Nourse, J. G., Hounshell, W. D., Gushurst, A. K. I., Grier, D. L., Leland, B. A. & Laufer, J. (1992) J. Chem. Inf. Comput. Sci. 32, 244-255.
17. Ouzuunis, C. A. & Karp, R. D. (2000) Genome Res. 10, 568-576.
18. Chung, F. & Lu, L. (2003) Internet Math. 1, 91-114.
19. Aiello, W., Chung, F. & Lu, L. (2001) Exp. Math. 10, 53-66.
20. Küffner, R., Zimmer, R. & Lengauer, T. (2000) Bioinformatics 16, 825-836.
21. Kitami, T. & Nadeau, J. H. (2002) Nat. Genet. 32, 191-194.
22. Schuster, S., Pfeiffer, T., Moldenhauer, F., Koch, I. & Dandekar, T. (2002) Bioinformatics 18, 351-361.
23. Gagneur, J., Jackson, D. B. & Casari, G. (2003) Bioinformatics 19, 1027-1034.
24. Stelling, J., Klamt, S., Bettenbrock, K., Schuster, S. & Gilles, E. D. (2002) Nature 420, 190-193.
25. Saqi, M. A. S. & Sternberg, M. J. E. (2001) J. Mol. Biol. 313, 1195-1206.
26. Neidhardt, F. C., Curtiss, R., III, Ingraham, J. L., Lin, E. C. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M. & Umbarger, H. E., eds. (1996) Escherichia coli and Salmonella (Amer. Soc. Microhiol., Washington, DC), pp. 189-198.