-
1
-
-
0004234375
-
-
G Michal (Ed), Heidelberg: Spektrum Akademischer Verlag
-
G Michal (Ed), Biochemical Pathways Heidelberg: Spektrum Akademischer Verlag 1999
-
(1999)
Biochemical Pathways
-
-
-
2
-
-
0036081062
-
The KEGG databases at GenomeNet
-
11752249. 10.1093/nar/30.1.42
-
The KEGG databases at GenomeNet. M Kanehisa S Goto SK S A Nakaya, Nucleic Acids Res 2002 30 42 46 11752249 10.1093/nar/30.1.42
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 42-46
-
-
Kanehisa, M.1
Goto, S.2
K, S.S.3
Nakaya, A.4
-
3
-
-
13444259844
-
Reactome: A knowledgebase of biological pathways
-
15608231
-
Reactome: a knowledgebase of biological pathways. G Joshi-Tope M Gillespie I Vastrik P D'Eustachio E Schmidt B de Bono B Jassal G Gopinath G Wu L Matthews S Lewis E Birney L Stein, Nucleic Acids Res 2005 33 Database D428 432 15608231
-
(2005)
Nucleic Acids Res
, Issue.33 DATABASE
, pp. 428-432
-
-
Joshi-Tope, G.1
Gillespie, M.2
Vastrik, I.3
D'Eustachio, P.4
Schmidt, E.5
De Bono, B.6
Jassal, B.7
Gopinath, G.8
Wu, G.9
Matthews, L.10
Lewis, S.11
Birney, E.12
Stein, L.13
-
4
-
-
0344328817
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)
-
12952533. 10.1186/gb-2003-4-9
-
An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). J Reed T Vo C Schilling B Palsson, Genome Biol 2003 4 9 R54 12952533 10.1186/gb-2003-4-9-r54
-
(2003)
Genome Biol
, vol.4
, Issue.9-54
, pp. 54
-
-
Reed, J.1
Vo, T.2
Schilling, C.3
Palsson, B.4
-
5
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
12566402. 10.1101/gr.234503
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. J Förster I Famili P Fu B Palsson J Nielsen, Genome Research 2003 13 2 244 253 12566402 10.1101/gr.234503
-
(2003)
Genome Research
, vol.13
, Issue.2
, pp. 244-253
-
-
Förster, J.1
Famili, I.2
Fu, P.3
Palsson, B.4
Nielsen, J.5
-
6
-
-
25844463806
-
Metabolic functions of duplicate genes in Saccharomyces cerevisiae
-
16204195. 10.1101/gr.3992505
-
Metabolic functions of duplicate genes in Saccharomyces cerevisiae. L Küpfer U Sauer LM Blank, Genome Research 2005 15 1421 1430 16204195 10.1101/gr.3992505
-
(2005)
Genome Research
, vol.15
, pp. 1421-1430
-
-
Küpfer, L.1
Sauer, U.2
Blank, L.M.3
-
7
-
-
0028108519
-
Metabolic flux balancing: Basic concepts, scientific and practical use
-
10.1038/nbt1094
-
Metabolic flux balancing: basic concepts, scientific and practical use. A Varma BO Palsson, Biotechnology 1994 12 994 998 10.1038/nbt1094-994
-
(1994)
Biotechnology
, vol.12
, Issue.10
, pp. 994-998
-
-
Varma, A.1
Palsson, B.O.2
-
8
-
-
0033080396
-
Detection of elementary flux modes in biochemical networks: A promising tool for pathway analysis and metabolic engineering
-
10.1016/S0167-7799(98)01290. 10087604
-
Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering. S Schuster T Dandekar DA Fell, Trends Biotechnol 1999 17 2 53 60 10.1016/S0167-7799(98)01290-6 10087604
-
(1999)
Trends Biotechnol
, vol.17
, Issue.2-6
, pp. 53-60
-
-
Schuster, S.1
Dandekar, T.2
Fell, D.A.3
-
9
-
-
0034615791
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective
-
10.1006/jtbi.2000.1073. 10716907
-
Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective. CH Schilling D Letscher BO Palsson, J Theor Biol 2000 203 229 248 10.1006/jtbi.2000.1073 10716907
-
(2000)
J Theor Biol
, vol.203
, pp. 229-248
-
-
Schilling, C.H.1
Letscher, D.2
Palsson, B.O.3
-
10
-
-
0036286631
-
Energy balance for analysis of complex metabolic networks
-
12080101
-
Energy balance for analysis of complex metabolic networks. DA Beard S Liang H Qian, Biophys J 2002 83 79 86 12080101
-
(2002)
Biophys J
, vol.83
, pp. 79-86
-
-
Beard, D.A.1
Liang, S.2
Qian, H.3
-
12
-
-
0026802334
-
Metabolic control analysis: A survey of its theoretical and experimental development
-
1530563
-
Metabolic control analysis: a survey of its theoretical and experimental development. DA Fell, Biochem J 1992 286 313 330 1530563
-
(1992)
Biochem J
, vol.286
, pp. 313-330
-
-
Fell, D.A.1
-
14
-
-
42749109054
-
Statistical mechanical approaches to models with many poorly known parameters
-
10.1103/PhysRevE.68.021904. 14525003
-
Statistical mechanical approaches to models with many poorly known parameters. KS Brown JP Sethna, Phys Rev E Stat Nonlin Soft Matter Phys 2003 68 021904 10.1103/PhysRevE.68.021904 14525003
-
(2003)
Phys Rev e Stat Nonlin Soft Matter Phys
, vol.68
, pp. 021904
-
-
Brown, K.S.1
Sethna, J.P.2
-
15
-
-
27244440301
-
Biochemical networks with uncertain parameters
-
10.1049/ip. 16986274
-
Biochemical networks with uncertain parameters. W Liebermeister E Klipp, Syst Biol (Stevenage) 2005 152 3 97 107 10.1049/ip-syb:20045033 16986274
-
(2005)
Syst Biol (Stevenage)
, vol.152
, Issue.3
, pp. 97-107
-
-
Liebermeister, W.1
Klipp, E.2
-
16
-
-
33747061013
-
Structural kinetic modeling of metabolic networks
-
16880395. 10.1073/pnas.0600013103
-
Structural kinetic modeling of metabolic networks. R Steuer T Gross J Selbig B Blasius, Proc Natl Acad Sci USA 2006 103 32 11868 11873 16880395 10.1073/pnas.0600013103
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.32
, pp. 11868-11873
-
-
Steuer, R.1
Gross, T.2
Selbig, J.3
Blasius, B.4
-
17
-
-
33746083686
-
Quantitative element are mode analysis of metabolic pathways: The example of yeast glycolysis
-
10.1186/1471-2105-7. 16584566
-
Quantitative element are mode analysis of metabolic pathways: the example of yeast glycolysis. JM Schwartz M Kanehisa, BMC Bioinformatics 2006 7 186 10.1186/1471-2105-7-186 16584566
-
(2006)
BMC Bioinformatics
, vol.7-186
, pp. 186
-
-
Schwartz, J.M.1
Kanehisa, M.2
-
18
-
-
0345863907
-
BRENDA, the enzyme database: Updates and major new developments
-
14681450. 10.1093/nar/gkh081
-
BRENDA, the enzyme database: updates and major new developments. I Schomburg A Chang C Ebeling M Gremse C Heldt G Huhn D Schomburg, Nucleic Acids Res 2004 32 Database D431 433 14681450 10.1093/nar/gkh081
-
(2004)
Nucleic Acids Res
, Issue.32 DATABASE
, pp. 431-433
-
-
Schomburg, I.1
Chang, A.2
Ebeling, C.3
Gremse, M.4
Heldt, C.5
Huhn, G.6
Schomburg, D.7
-
19
-
-
8844259501
-
Thermodynamics of enzyme-catalyzed reactions - A database for quantitative biochemistry
-
10.1093/bioinformatics/bth314. 15145806
-
Thermodynamics of enzyme-catalyzed reactions - a database for quantitative biochemistry. RN Goldberg YB Tewari TN Bhat, Bioinformatics 2004 20 2874 7 10.1093/bioinformatics/bth314 15145806
-
(2004)
Bioinformatics
, vol.20
, pp. 2874-7
-
-
Goldberg, R.N.1
Tewari, Y.B.2
Bhat, T.N.3
-
20
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
10.1038/nature02026. 14562095
-
Global analysis of protein localization in budding yeast. WK Huh JV Falvo LC Gerke AS Carroll RW Howson JS Weissman EK O'Shea, Nature 2003 425 686 691 10.1038/nature02026 14562095
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
Howson, R.W.5
Weissman, J.S.6
O'Shea, E.K.7
-
21
-
-
4544344218
-
Web-based kinetic modelling using JWS Online
-
10.1093/bioinformatics/bth200. 15072998
-
Web-based kinetic modelling using JWS Online. B Olivier J Snoep, Bioinformatics 2004 20 13 2143 2144 10.1093/bioinformatics/bth200 15072998
-
(2004)
Bioinformatics
, vol.20
, Issue.13
, pp. 2143-2144
-
-
Olivier, B.1
Snoep, J.2
-
22
-
-
33846605217
-
-
http://www.ebi.ac.uk/biomodels
-
http://www.ebi.ac.uk/biomodels
-
-
-
-
23
-
-
0025701406
-
Group contributions for estimating standard Gibbs energies of formation of biochemical compounds in aqueous solution
-
10.1002/bit.260361013
-
Group contributions for estimating standard Gibbs energies of formation of biochemical compounds in aqueous solution. M Mavrovouniotis, Biotechnology and Bioengineering 1990 36 1070 1082 10.1002/bit.260361013
-
(1990)
Biotechnology and Bioengineering
, vol.36
, pp. 1070-1082
-
-
Mavrovouniotis, M.1
-
24
-
-
0025276048
-
Cellular concentrations of enzymes and their substrates
-
10.1016/S0022-5193(05)80266. 2200929
-
Cellular concentrations of enzymes and their substrates. KR Albe MH Butler BE Wright, J Theor Biol 1990 143 163 195 10.1016/S0022-5193(05)80266-8 2200929
-
(1990)
J Theor Biol
, vol.143
, Issue.8
, pp. 163-195
-
-
Albe, K.R.1
Butler, M.H.2
Wright, B.E.3
-
25
-
-
0242574982
-
Parameter estimation in biochemical pathways: A comparison of global optimization methods
-
14559783. 10.1101/gr.1262503
-
Parameter estimation in biochemical pathways: a comparison of global optimization methods. C Moles P Mendes J Banga, Genome Research 2003 13 11 2467 2474 14559783 10.1101/gr.1262503
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2467-2474
-
-
Moles, C.1
Mendes, P.2
Banga, J.3
-
26
-
-
32044474451
-
A hybrid approach for efficient and robust parameter estimation in biochemical pathways
-
10.1016/j.biosystems.2005.06.016. 16236429
-
A hybrid approach for efficient and robust parameter estimation in biochemical pathways. M Rodriguez-Fernandeza P Mendes J Banga, Biosystems 2006 83 2-3 248 265 10.1016/j.biosystems.2005.06.016 16236429
-
(2006)
Biosystems
, vol.83
, Issue.2-3
, pp. 248-265
-
-
Rodriguez-Fernandeza, M.1
Mendes, P.2
Banga, J.3
-
27
-
-
33750415038
-
SBML-PET: A Systems Biology Markup Language-based parameter estimation tool
-
10.1093/bioinformatics/btl443. 16926221
-
SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. Z Zi E Klipp, Bioinformatics 2006 22 21 2704 2705 10.1093/bioinformatics/ btl443 16926221
-
(2006)
Bioinformatics
, vol.22
, Issue.21
, pp. 2704-2705
-
-
Zi, Z.1
Klipp, E.2
-
28
-
-
33646364037
-
Identification of metabolic system parameters using global optimization methods
-
16441881. 10.1186/1742-4682-3
-
Identification of metabolic system parameters using global optimization methods. P Polisetty E Voit E Gatzke, Theor Biol Med Model 2006 3 4 16441881 10.1186/1742-4682-3-4
-
(2006)
Theor Biol Med Model
, vol.3-4
, pp. 4
-
-
Polisetty, P.1
Voit, E.2
Gatzke, E.3
-
29
-
-
33747876155
-
A decompositional approach to parameter estimation in pathway modeling: A case study of the Akt and MAPK pathways and their crosstalk
-
10.1093/bioinformatics/btl264. 16873482
-
A decompositional approach to parameter estimation in pathway modeling: a case study of the Akt and MAPK pathways and their crosstalk. G Koh H Teong M Clement D Hsu P Thiagarajan, Bioinformatics 2006 22 14 e271 e280 10.1093/bioinformatics/btl264 16873482
-
(2006)
Bioinformatics
, vol.22
, Issue.14
-
-
Koh, G.1
Teong, H.2
Clement, M.3
Hsu, D.4
Thiagarajan, P.5
-
30
-
-
18244406832
-
Inferring dynamic properties of biochemical reaction networks from structural knowledge
-
15712116
-
Inferring dynamic properties of biochemical reaction networks from structural knowledge. E Klipp W Liebermeister C Wierling, Genome Informatics 2004 15 125 137 15712116
-
(2004)
Genome Informatics
, vol.15
, pp. 125-137
-
-
Klipp, E.1
Liebermeister, W.2
Wierling, C.3
-
31
-
-
33846617808
-
Bringing metabolic networks to life: Convenience rate law and thermodynamic constraints
-
10.1186/1742-4682-3. 17173669
-
Bringing metabolic networks to life: convenience rate law and thermodynamic constraints. W Liebermeister E Klipp, Theor Biol Med Model 2006 3 41 10.1186/1742-4682-3-41 17173669
-
(2006)
Theor Biol Med Model
, vol.3-41
, pp. 41
-
-
Liebermeister, W.1
Klipp, E.2
-
32
-
-
0025302537
-
Metabolic control analysis. Sensitivity of control coefficients to elasticities
-
10.1111/j.1432. 2384089
-
Metabolic control analysis. Sensitivity of control coefficients to elasticities. JR Small D Fell, Eur J Biochem 1990 191 413 420 10.1111/j.1432-1033.1990.tb19137.x 2384089
-
(1990)
Eur J Biochem
, vol.191
, pp. 413-420
-
-
Small, J.R.1
Fell, D.2
-
33
-
-
0035365847
-
An integrated study of threonine-pathway enzyme kinetics in Escherichia coli
-
11368768. 10.1042/0264
-
An integrated study of threonine-pathway enzyme kinetics in Escherichia coli. C Chassagnole B Ras E Quentin DA Fell J Mazat, Biochem J 2001 356 415 423 11368768 10.1042/0264-6021:3560415
-
(2001)
Biochem J
, vol.356
, pp. 415-423
-
-
Chassagnole, C.1
Ras, B.2
Quentin, E.3
Fell, D.A.4
Mazat, J.5
-
34
-
-
0023709196
-
Metabolic control theory: A structural approach
-
10.1016/S0022-5193(88)80073. 3267767
-
Metabolic control theory: a structural approach. C Reder, J Theor Biol 1988 135 175 201 10.1016/S0022-5193(88)80073-0 3267767
-
(1988)
J Theor Biol
, vol.135
, pp. 175-201
-
-
Reder, C.1
-
36
-
-
0037466509
-
Sensitivity analysis of stoichiometric networks: An extension of metabolic control analysis to non-steady state trajectories
-
10.1016/S0022-5193(03)00011. 12699732
-
Sensitivity analysis of stoichiometric networks: an extension of metabolic control analysis to non-steady state trajectories. BP Ingalls HM Sauro, J Theor Biol 2003 222 23 36 10.1016/S0022-5193(03)00011-0 12699732
-
(2003)
J Theor Biol
, vol.222
, pp. 23-36
-
-
Ingalls, B.P.1
Sauro, H.M.2
-
37
-
-
33645015786
-
Predicting physiological concentrations of metabolites from their molecular structure
-
10.1089/cmb.2005.12.1307
-
Predicting physiological concentrations of metabolites from their molecular structure. W Liebermeister, J Comp Biol 2005 12 10 1307 1315 10.1089/cmb.2005.12.1307
-
(2005)
J Comp Biol
, vol.12
, Issue.10
, pp. 1307-1315
-
-
Liebermeister, W.1
|