-
1
-
-
0037308498
-
When being most likely is not enough: examining the performance of three uses of the parametric bootstrap in phylogenetics
-
Antezana M. When being most likely is not enough: examining the performance of three uses of the parametric bootstrap in phylogenetics. J. Mol. Evol. 56 (2003) 198-222
-
(2003)
J. Mol. Evol.
, vol.56
, pp. 198-222
-
-
Antezana, M.1
-
2
-
-
0034780723
-
Molecular phylogenetics of gnathostomous (jawed) fishes: old bones, new cartilage
-
Arnason U., Gullberg A., and Janke A. Molecular phylogenetics of gnathostomous (jawed) fishes: old bones, new cartilage. Zool. Scripta 30 (2001) 249-255
-
(2001)
Zool. Scripta
, vol.30
, pp. 249-255
-
-
Arnason, U.1
Gullberg, A.2
Janke, A.3
-
3
-
-
2942529011
-
Mitogenomic analysis of deep gnathostome divergences: a fish is a fish
-
Arnason U., Gullberg A., Janke A., Joss J., and Elmerot C. Mitogenomic analysis of deep gnathostome divergences: a fish is a fish. Gene 333 (2004) 61-70
-
(2004)
Gene
, vol.333
, pp. 61-70
-
-
Arnason, U.1
Gullberg, A.2
Janke, A.3
Joss, J.4
Elmerot, C.5
-
4
-
-
20444491634
-
A review of long-branch attraction
-
Bergsten J. A review of long-branch attraction. Cladistics 21 (2005) 163-193
-
(2005)
Cladistics
, vol.21
, pp. 163-193
-
-
Bergsten, J.1
-
5
-
-
34249326430
-
-
Bigelow, H.B., Schroeder, W.C. (Eds.), 1948. Fishes of the North Atlantic. Sears Found. Mar. Res. Mem. No. 1, Part 3, Yale University, New Haven, CT, pp. 53-576.
-
-
-
-
6
-
-
26444482460
-
Molecular phylogeny and divergence times of deuterostome animals
-
Blair J.E., and Hedges S.B. Molecular phylogeny and divergence times of deuterostome animals. Mol. Biol. Evol. 20 (2005) 2275-2284
-
(2005)
Mol. Biol. Evol.
, vol.20
, pp. 2275-2284
-
-
Blair, J.E.1
Hedges, S.B.2
-
7
-
-
0041858041
-
Xenoturbella is a deuterostome that eats molluscs
-
Bourlat S.J., Nielsen C., Lockyer A.E., Littlewood D.T.J., and Telford M.J. Xenoturbella is a deuterostome that eats molluscs. Nature 424 (2003) 925-928
-
(2003)
Nature
, vol.424
, pp. 925-928
-
-
Bourlat, S.J.1
Nielsen, C.2
Lockyer, A.E.3
Littlewood, D.T.J.4
Telford, M.J.5
-
8
-
-
33750585486
-
Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida
-
Bourlat S.J., et al. Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida. Nature 444 (2006) 85-88
-
(2006)
Nature
, vol.444
, pp. 85-88
-
-
Bourlat, S.J.1
-
9
-
-
11944270355
-
Complete mitochondrial genome sequences of the South American and the Australian lungfish: testing of the phylogenetic performance of mitochondrial data sets for phylogenetic problems in tetrapod relationshisps
-
Brinkmann H., Denk A., Zitzler J., Joss J.J., and Meyer A. Complete mitochondrial genome sequences of the South American and the Australian lungfish: testing of the phylogenetic performance of mitochondrial data sets for phylogenetic problems in tetrapod relationshisps. J. Mol. Evol. 59 (2004) 834-848
-
(2004)
J. Mol. Evol.
, vol.59
, pp. 834-848
-
-
Brinkmann, H.1
Denk, A.2
Zitzler, J.3
Joss, J.J.4
Meyer, A.5
-
10
-
-
1842737743
-
Protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates
-
Brinkmann H., Venkatesh B., Brenner S., and Meyer A. Protein-coding genes support lungfish and not the coelacanth as the closest living relatives of land vertebrates. Proc. Natl. Acad. Sci. USA 101 (2004) 4900-4905
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4900-4905
-
-
Brinkmann, H.1
Venkatesh, B.2
Brenner, S.3
Meyer, A.4
-
11
-
-
0033224472
-
Hemichordates and deuterostome evolution: robust molecular phylogenetic support for a hemichordate + echinoderm clade
-
Bronham L.D., and Degnan B.M. Hemichordates and deuterostome evolution: robust molecular phylogenetic support for a hemichordate + echinoderm clade. Evol. Dev. 1 (1999) 166-171
-
(1999)
Evol. Dev.
, vol.1
, pp. 166-171
-
-
Bronham, L.D.1
Degnan, B.M.2
-
12
-
-
0036623259
-
Model misspecification and probabilistic tests of topology: Evidence from empirical data sets
-
Buckley T.R. Model misspecification and probabilistic tests of topology: Evidence from empirical data sets. Syst. Biol. 51 (2002) 509-523
-
(2002)
Syst. Biol.
, vol.51
, pp. 509-523
-
-
Buckley, T.R.1
-
13
-
-
0036213207
-
The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support
-
Buckley T.R., and Cunningham C.W. The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support. Mol. Biol. Evol. 19 (2002) 394-405
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 394-405
-
-
Buckley, T.R.1
Cunningham, C.W.2
-
14
-
-
0034712915
-
Evolution of the chordate body plan: new insights from phylogenetic analyses of deuterstome phyla
-
Cameron C.B., Garey J.R., and Swalla B.J. Evolution of the chordate body plan: new insights from phylogenetic analyses of deuterstome phyla. Proc. Natl. Acad. Sci. USA 97 (2000) 4469-4474
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 4469-4474
-
-
Cameron, C.B.1
Garey, J.R.2
Swalla, B.J.3
-
15
-
-
0034707202
-
Phylogenetic position of turtles among amniotes: evidence from mitochondrial and nuclear genes
-
Cao Y., Sorensen M.D., Kumazawa Y., Mindell D.P., and Hasegawa M. Phylogenetic position of turtles among amniotes: evidence from mitochondrial and nuclear genes. Gene 259 (2000) 139-148
-
(2000)
Gene
, vol.259
, pp. 139-148
-
-
Cao, Y.1
Sorensen, M.D.2
Kumazawa, Y.3
Mindell, D.P.4
Hasegawa, M.5
-
16
-
-
0031770677
-
The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria
-
Castresana J., Feldmaier-Fuchs G., Yokobori S., Satoh N., and Pääbo S. The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria. Genetics 150 (1998) 1115-1123
-
(1998)
Genetics
, vol.150
, pp. 1115-1123
-
-
Castresana, J.1
Feldmaier-Fuchs, G.2
Yokobori, S.3
Satoh, N.4
Pääbo, S.5
-
17
-
-
33644600635
-
Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and assessment of the utility of phylogenetic mixture models
-
Collins A.G., Schuchbert P., Marques A.C., Jankowski T., Medina M., and Schierwater B. Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and assessment of the utility of phylogenetic mixture models. Syst. Biol. 55 (2006) 97-115
-
(2006)
Syst. Biol.
, vol.55
, pp. 97-115
-
-
Collins, A.G.1
Schuchbert, P.2
Marques, A.C.3
Jankowski, T.4
Medina, M.5
Schierwater, B.6
-
18
-
-
0003075061
-
Interrelationships of living elasmobranchs
-
Compagno L.J.V. Interrelationships of living elasmobranchs. Zool. J. Linn. Soc. 53 Suppl. 1 (1973) 15-61
-
(1973)
Zool. J. Linn. Soc.
, vol.53
, Issue.SUPPL. 1
, pp. 15-61
-
-
Compagno, L.J.V.1
-
19
-
-
77957213109
-
Phyletic relationships of living sharks and rays
-
Compagno L.J.V. Phyletic relationships of living sharks and rays. Am. Zool. 17 (1977) 303-322
-
(1977)
Am. Zool.
, vol.17
, pp. 303-322
-
-
Compagno, L.J.V.1
-
20
-
-
0037036630
-
Going nuclear: gene family evolution and vertebrate phylogeny reconciled
-
Cotton J.A., and Page R.D.M. Going nuclear: gene family evolution and vertebrate phylogeny reconciled. Proc. R. Soc. Lond. B 269 (2002) 1555-1561
-
(2002)
Proc. R. Soc. Lond. B
, vol.269
, pp. 1555-1561
-
-
Cotton, J.A.1
Page, R.D.M.2
-
21
-
-
34249342145
-
-
Currie P.J., Koppelhus E., Shugar M., and Wright J.A. (Eds), Indiana University Press, Bloomington
-
In: Currie P.J., Koppelhus E., Shugar M., and Wright J.A. (Eds). Feathered Dragons: The Origin of Birds and Flight (2004), Indiana University Press, Bloomington
-
(2004)
Feathered Dragons: The Origin of Birds and Flight
-
-
-
22
-
-
0031287772
-
Reptile phylogeny and the interrelationships of turtles
-
de Braga M., and Rieppel O. Reptile phylogeny and the interrelationships of turtles. Zool. J. Linn. Soc. 120 (1997) 281-354
-
(1997)
Zool. J. Linn. Soc.
, vol.120
, pp. 281-354
-
-
de Braga, M.1
Rieppel, O.2
-
23
-
-
0002013551
-
Higher-level elasmobranch phylogeny, basal squaleans, and paraphyly
-
Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds), Academic Press, San Diego
-
de Carvalho M.R. Higher-level elasmobranch phylogeny, basal squaleans, and paraphyly. In: Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds). Interrelationships of Fishes (1996), Academic Press, San Diego 35-62
-
(1996)
Interrelationships of Fishes
, pp. 35-62
-
-
de Carvalho, M.R.1
-
24
-
-
33644536713
-
Tunicates and not cephalochordates are the closest living relatives of vertebrates
-
Delsuc F., Brinkmann H., Chourrout D., and Philippe H. Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 439 (2006) 965-968
-
(2006)
Nature
, vol.439
, pp. 965-968
-
-
Delsuc, F.1
Brinkmann, H.2
Chourrout, D.3
Philippe, H.4
-
26
-
-
0037331934
-
Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks
-
Douady C.J., Dosay M., Shivji M., and Stanhope M.S. Molecular phylogenetic evidence refuting the hypothesis of Batoidea (rays and skates) as derived sharks. Mol. Phylogenet. Evol. 26 (2003) 215-221
-
(2003)
Mol. Phylogenet. Evol.
, vol.26
, pp. 215-221
-
-
Douady, C.J.1
Dosay, M.2
Shivji, M.3
Stanhope, M.S.4
-
28
-
-
0001846046
-
Hagfish systematics
-
Jorgensen J.M., Lomholt J.P., Weber R.E., and Malte H. (Eds), Chapman and Hall, New York
-
Fernholm B. Hagfish systematics. In: Jorgensen J.M., Lomholt J.P., Weber R.E., and Malte H. (Eds). The Biology of Hagfishes (1998), Chapman and Hall, New York 33-44
-
(1998)
The Biology of Hagfishes
, pp. 33-44
-
-
Fernholm, B.1
-
29
-
-
0036586547
-
Bayesian phylogenetic analysis supports monophyly of ambulacraria and cyclostomes
-
Furlong R.F., and Holland P.W.H. Bayesian phylogenetic analysis supports monophyly of ambulacraria and cyclostomes. Zool. Sci. 19 (2002) 593-599
-
(2002)
Zool. Sci.
, vol.19
, pp. 593-599
-
-
Furlong, R.F.1
Holland, P.W.H.2
-
30
-
-
0035029534
-
Maximum-likelihood phylogenetic analysis under a covarion-like model
-
Galtier N. Maximum-likelihood phylogenetic analysis under a covarion-like model. Mol. Biol. Evol. 18 (2001) 866-873
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 866-873
-
-
Galtier, N.1
-
31
-
-
0001019878
-
Tetrapod classification
-
Gardiner B.G. Tetrapod classification. Zool. J. Linn. Soc. 74 (1982) 207-232
-
(1982)
Zool. J. Linn. Soc.
, vol.74
, pp. 207-232
-
-
Gardiner, B.G.1
-
33
-
-
0024258114
-
Amniote phylogeny and the importance of fossils
-
Gauthier J., Kluge A.G., and Rowe T. Amniote phylogeny and the importance of fossils. Cladistics 4 (1988) 105-209
-
(1988)
Cladistics
, vol.4
, pp. 105-209
-
-
Gauthier, J.1
Kluge, A.G.2
Rowe, T.3
-
35
-
-
33644502900
-
Careful with that Amphioxus
-
Gee H. Careful with that Amphioxus. Nature 439 (2006) 923-924
-
(2006)
Nature
, vol.439
, pp. 923-924
-
-
Gee, H.1
-
36
-
-
20444379556
-
A secondary structure model of 28S rRNA expansion segments D2 and D3 for the chalcidoid wasps (Hymenoptera: Chalcidoidea)
-
Gillespie J.J., Munro J.B., Heraty J.M., Yoder M.J., Owen A.K., and Carmichael A.E. A secondary structure model of 28S rRNA expansion segments D2 and D3 for the chalcidoid wasps (Hymenoptera: Chalcidoidea). Mol. Biol. Evol. 22 (2005) 1593-1608
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1593-1608
-
-
Gillespie, J.J.1
Munro, J.B.2
Heraty, J.M.3
Yoder, M.J.4
Owen, A.K.5
Carmichael, A.E.6
-
37
-
-
0036380787
-
Current advances in the phylogenetic reconstruction of metazoan evolution. A new paradigm for the Cambrian explosion?
-
Giribet G. Current advances in the phylogenetic reconstruction of metazoan evolution. A new paradigm for the Cambrian explosion?. Mol. Phylogenet. Evol. 24 (2002) 345-357
-
(2002)
Mol. Phylogenet. Evol.
, vol.24
, pp. 345-357
-
-
Giribet, G.1
-
38
-
-
84956955115
-
The position of crustaceans within the Arthropoda - evidence from nine molecular loci and morphology
-
Koenemann S., and Jenner R.A. (Eds), Taylor & Francis, Boca Raton
-
Giribet G., Richter S., Edgecombe G.D., and Wheeler W.C. The position of crustaceans within the Arthropoda - evidence from nine molecular loci and morphology. In: Koenemann S., and Jenner R.A. (Eds). Crustacean Issues 16: Crustacea and Arthropod Relationships. Festschrift for Frederick R. Schram (2005), Taylor & Francis, Boca Raton 307-352
-
(2005)
Crustacean Issues 16: Crustacea and Arthropod Relationships. Festschrift for Frederick R. Schram
, pp. 307-352
-
-
Giribet, G.1
Richter, S.2
Edgecombe, G.D.3
Wheeler, W.C.4
-
39
-
-
3142777033
-
Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangements and the presence of an atp8 and an extra trnM gene in ascidians
-
Gissi C., Iannelli F., and Pesole G. Complete mtDNA of Ciona intestinalis reveals extensive gene rearrangements and the presence of an atp8 and an extra trnM gene in ascidians. J. Mol. Evol. 58 (2004) 376-389
-
(2004)
J. Mol. Evol.
, vol.58
, pp. 376-389
-
-
Gissi, C.1
Iannelli, F.2
Pesole, G.3
-
40
-
-
0034351387
-
Likelihood-based tests of topologies in phylogenetics
-
Goldman N., Anderson J.P., and Rodrigo A.G. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49 (2000) 652-670
-
(2000)
Syst. Biol.
, vol.49
, pp. 652-670
-
-
Goldman, N.1
Anderson, J.P.2
Rodrigo, A.G.3
-
41
-
-
34249289233
-
-
Gudger, E.W., Smith, B.G., 1933. The natural history of thefrilled shark, Chlamydoselachus anguineus. In: Gudger, E.W. (Ed.), Bashford Dean Memorial Volume: Archaic Fishes, Article 5. Am. Mus. Nat. Hist., New York, pp. 245-319.
-
-
-
-
42
-
-
0029268667
-
The phylogenetic position of the pterobranch hemichordates based on 18S rDNA sequence data
-
Halanych K.M. The phylogenetic position of the pterobranch hemichordates based on 18S rDNA sequence data. Mol. Phylogen. Evol. 4 (1995) 72-76
-
(1995)
Mol. Phylogen. Evol.
, vol.4
, pp. 72-76
-
-
Halanych, K.M.1
-
43
-
-
0028921291
-
18S rDNA evidence that the lophophorates are protostome animals
-
Halanych K.M., Bachelor J., Aguinaldo A.M.A., Liva S., Hillis D.M., and Lake J.A. 18S rDNA evidence that the lophophorates are protostome animals. Science 267 (1995) 1641-1643
-
(1995)
Science
, vol.267
, pp. 1641-1643
-
-
Halanych, K.M.1
Bachelor, J.2
Aguinaldo, A.M.A.3
Liva, S.4
Hillis, D.M.5
Lake, J.A.6
-
45
-
-
0000987325
-
Lampreys and hagfishes: analysis of cyclostome relationships
-
Hardisty M.W., and Potter I.C. (Eds), Academic Press, London
-
Hardisty M.W. Lampreys and hagfishes: analysis of cyclostome relationships. In: Hardisty M.W., and Potter I.C. (Eds). The Biology of Lampreys vol. 4B (1982), Academic Press, London 166-260
-
(1982)
The Biology of Lampreys
, vol.4 B
, pp. 166-260
-
-
Hardisty, M.W.1
-
46
-
-
28844437888
-
Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution
-
Hassanin A. Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution. Mol. Phylogen. Evol. 38 (2006) 100-116
-
(2006)
Mol. Phylogen. Evol.
, vol.38
, pp. 100-116
-
-
Hassanin, A.1
-
47
-
-
0033548225
-
A molecular phylogeny of reptiles
-
Hedges S.B., and Poling L.L. A molecular phylogeny of reptiles. Science 283 (1999) 998-1001
-
(1999)
Science
, vol.283
, pp. 998-1001
-
-
Hedges, S.B.1
Poling, L.L.2
-
48
-
-
0025133472
-
Hexapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships
-
Hedges S.B., Moberg K.D., and Maxson L.R. Hexapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships. Mol. Biol. Evol. 7 (1990) 607-633
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 607-633
-
-
Hedges, S.B.1
Moberg, K.D.2
Maxson, L.R.3
-
49
-
-
1842674710
-
Contributions to the study of the comparative morphology of teeth and other relevant ichthyodorulites in living supraspecific taxa of chondrichthyan fishes.
-
Part A: Selachii. No. 1b: Order Hexanchiformes-Family Chlamydoselachidae
-
Herman J., Hovestadt-Euler M., and Hovestadt D.C. Contributions to the study of the comparative morphology of teeth and other relevant ichthyodorulites in living supraspecific taxa of chondrichthyan fishes. Part A: Selachii. No. 1b: Order Hexanchiformes-Family Chlamydoselachidae. Bull. Inst. R. Soc. Nat. Belg., Biol. 63 (1993) 185-256
-
(1993)
Bull. Inst. R. Soc. Nat. Belg., Biol.
, vol.63
, pp. 185-256
-
-
Herman, J.1
Hovestadt-Euler, M.2
Hovestadt, D.C.3
-
50
-
-
0342310035
-
Contributions to the study of the comparative morphology of teeth and other relevant ichthyodorulites in living supraspecific taxa of chondrichthyan fishes. Addendum to Part A, No. 1: Order Hexanchiformes-Family Hexanchidae. Odontological results supporting the validity of Hexanchus vitulus Springer & Waller as the third species of the genus Hexanchus Rafinesque, 1810
-
Herman J., Hovestadt-Euler M., and Hovestadt D.C. Contributions to the study of the comparative morphology of teeth and other relevant ichthyodorulites in living supraspecific taxa of chondrichthyan fishes. Addendum to Part A, No. 1: Order Hexanchiformes-Family Hexanchidae. Odontological results supporting the validity of Hexanchus vitulus Springer & Waller as the third species of the genus Hexanchus Rafinesque, 1810, and suggesting intrafamilial reordering of the Hexanchidae. Bull. Inst. R. Soc. Nat. Belg., Biol. 64 (1994) 147-163
-
(1994)
Bull. Inst. R. Soc. Nat. Belg., Biol.
, vol.64
, pp. 147-163
-
-
Herman, J.1
Hovestadt-Euler, M.2
Hovestadt, D.C.3
-
51
-
-
25144465875
-
Integration of morphological data sets for phylogenetic analysis of amniota: the importance of integumentary characters and increased taxonomic sampling
-
Hill R.V. Integration of morphological data sets for phylogenetic analysis of amniota: the importance of integumentary characters and increased taxonomic sampling. Syst. Biol. 54 (2005) 530-547
-
(2005)
Syst. Biol.
, vol.54
, pp. 530-547
-
-
Hill, R.V.1
-
52
-
-
0026300584
-
Ribosomal DNA: molecular evolution and phylogenetic inference
-
Hillis D.M., and Dixon M.T. Ribosomal DNA: molecular evolution and phylogenetic inference. Quart. Rev. Biol. 66 (1991) 411-453
-
(1991)
Quart. Rev. Biol.
, vol.66
, pp. 411-453
-
-
Hillis, D.M.1
Dixon, M.T.2
-
54
-
-
0037781970
-
The Ciona intestinalis genome: when the constraints are off
-
Holland L.Z., and Gibson-Brown J.J. The Ciona intestinalis genome: when the constraints are off. Bioessays 25 (2003) 529-532
-
(2003)
Bioessays
, vol.25
, pp. 529-532
-
-
Holland, L.Z.1
Gibson-Brown, J.J.2
-
55
-
-
0002224274
-
Distribution, phylogeny, and taxonomy
-
Hardisty M.W., and Potter I.C. (Eds), Academic Press, New York
-
Hubbs C.L., and Potter I.C. Distribution, phylogeny, and taxonomy. In: Hardisty M.W., and Potter I.C. (Eds). The Biology of Lampreys (1971), Academic Press, New York 1-65
-
(1971)
The Biology of Lampreys
, pp. 1-65
-
-
Hubbs, C.L.1
Potter, I.C.2
-
56
-
-
0141721420
-
RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences
-
Hudelot C., Gowri-Shankar V., Jow H., Rattray M., and Higgs P.G. RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences. Mol. Phylogenet. Evol. 28 (2003) 241-252
-
(2003)
Mol. Phylogenet. Evol.
, vol.28
, pp. 241-252
-
-
Hudelot, C.1
Gowri-Shankar, V.2
Jow, H.3
Rattray, M.4
Higgs, P.G.5
-
57
-
-
0036097894
-
Testing a covariotide model of DNA substitution
-
Huelsenbeck J.P. Testing a covariotide model of DNA substitution. Mol. Biol. Evol. 19 (2002) 698-707
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 698-707
-
-
Huelsenbeck, J.P.1
-
58
-
-
34249336264
-
-
Huelsenbeck, J.P., Ronquist, F., 2003. MrBayes: Bayesian Inference of Phylogeny, v. 3.0. Program and documentation available at: http://morphbank.ebc.uu.se/mrbayes/.
-
-
-
-
60
-
-
0002410257
-
Parametric bootstrapping in molecular phylogenetics: applications and performance
-
Ferraris J.D., and Palumbi S.R. (Eds), Wiley-Liss, New York
-
Huelsenbeck J.P., Hillis D.M., and Jones R. Parametric bootstrapping in molecular phylogenetics: applications and performance. In: Ferraris J.D., and Palumbi S.R. (Eds). Molecular Zoology: Advances, Strategies, and Protocols (1996), Wiley-Liss, New York 19-45
-
(1996)
Molecular Zoology: Advances, Strategies, and Protocols
, pp. 19-45
-
-
Huelsenbeck, J.P.1
Hillis, D.M.2
Jones, R.3
-
61
-
-
0035861456
-
Bayesian inference of phylogeny and its impact on evolutionary biology
-
Huelsenbeck J.P., Ronquist F., Nielsen R., and Bollback J.P. Bayesian inference of phylogeny and its impact on evolutionary biology. Science 294 (2001) 2310-2314
-
(2001)
Science
, vol.294
, pp. 2310-2314
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
Nielsen, R.3
Bollback, J.P.4
-
62
-
-
33646067108
-
Testing morphologically based phylogenetic theories within the cartilaginous fishes with molecular data, with special reference to the cat shark family (Chondrichthyes, Scyliorhinidae) and the interrelationships within them
-
Human B.A., Owen E.P., Compagno L.J.V., and Harley E.H. Testing morphologically based phylogenetic theories within the cartilaginous fishes with molecular data, with special reference to the cat shark family (Chondrichthyes, Scyliorhinidae) and the interrelationships within them. Mol. Phylogenet. Evol. 39 (2006) 384-391
-
(2006)
Mol. Phylogenet. Evol.
, vol.39
, pp. 384-391
-
-
Human, B.A.1
Owen, E.P.2
Compagno, L.J.V.3
Harley, E.H.4
-
63
-
-
12244307474
-
Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of "ancient fish"
-
Inoue J.G., Miya M., Tsukamoto K., and Nishida M. Basal actinopterygian relationships: a mitogenomic perspective on the phylogeny of "ancient fish". Mol. Phylogen. Evol. 26 (2003) 110-120
-
(2003)
Mol. Phylogen. Evol.
, vol.26
, pp. 110-120
-
-
Inoue, J.G.1
Miya, M.2
Tsukamoto, K.3
Nishida, M.4
-
64
-
-
16344381907
-
Sister-group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins
-
Iwabe N., Hara Y., Kumazawa Y., Shibamato K., Saito Y., Miyata T., and Katoh K. Sister-group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins. Mol. Biol. Evol. 22 (2005) 810-813
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 810-813
-
-
Iwabe, N.1
Hara, Y.2
Kumazawa, Y.3
Shibamato, K.4
Saito, Y.5
Miyata, T.6
Katoh, K.7
-
65
-
-
0034875668
-
Phylogenetic relationships of extant echinoderm classes
-
Janies D. Phylogenetic relationships of extant echinoderm classes. Can. J. Zool. 79 (2001) 1232-1250
-
(2001)
Can. J. Zool.
, vol.79
, pp. 1232-1250
-
-
Janies, D.1
-
66
-
-
17144434204
-
-
Clarendon (Oxford University Press), New York
-
Janvier P. Early Vertebrates (1996), Clarendon (Oxford University Press), New York
-
(1996)
Early Vertebrates
-
-
Janvier, P.1
-
67
-
-
4644299089
-
The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated
-
Jermiin L.S., Ho S.Y.W., Ababneh F., Robinson J., and Larkum A.W.D. The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated. Syst. Biol. 53 (2004) 638-643
-
(2004)
Syst. Biol.
, vol.53
, pp. 638-643
-
-
Jermiin, L.S.1
Ho, S.Y.W.2
Ababneh, F.3
Robinson, J.4
Larkum, A.W.D.5
-
68
-
-
29344470071
-
Is the"big bang" in animal evolution real?
-
Jermiin L.S., Poladian L., and Charleston M.A. Is the"big bang" in animal evolution real?. Science 310 (2005) 1910-1911
-
(2005)
Science
, vol.310
, pp. 1910-1911
-
-
Jermiin, L.S.1
Poladian, L.2
Charleston, M.A.3
-
69
-
-
0015839928
-
The origin of the chordates
-
Jollie M. The origin of the chordates. Acta Zool. (Stockh.) 54 (1973) 81-100
-
(1973)
Acta Zool. (Stockh.)
, vol.54
, pp. 81-100
-
-
Jollie, M.1
-
70
-
-
0036728808
-
Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution
-
Jow H., Hudelot C., Rattray M., and Higgs P.G. Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution. Mol. Biol. Evol. 19 (2002) 1591-1601
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1591-1601
-
-
Jow, H.1
Hudelot, C.2
Rattray, M.3
Higgs, P.G.4
-
71
-
-
0004121797
-
-
McGraw Hill Higher Education, Dubuque, IA
-
Kardong K. Vertebrates. Comparative Anatomy, Function, Evolution. fourth ed. (2006), McGraw Hill Higher Education, Dubuque, IA
-
(2006)
Vertebrates. Comparative Anatomy, Function, Evolution. fourth ed.
-
-
Kardong, K.1
-
72
-
-
3242720295
-
Basal-jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes
-
Kikugawa K., Katoh K., Kuraku S., Sukari H., Ishida O., Iwabe N., and Miyata T. Basal-jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes. BMC Biology 2004 2 (2004) 3
-
(2004)
BMC Biology 2004
, vol.2
, pp. 3
-
-
Kikugawa, K.1
Katoh, K.2
Kuraku, S.3
Sukari, H.4
Ishida, O.5
Iwabe, N.6
Miyata, T.7
-
73
-
-
3242721251
-
Aligned 18S and insect phylogeny
-
Kjer K.M. Aligned 18S and insect phylogeny. Syst. Biol. 53 (2004) 506-514
-
(2004)
Syst. Biol.
, vol.53
, pp. 506-514
-
-
Kjer, K.M.1
-
75
-
-
0033279828
-
Monophyly of lampreys and hagfishes supported by nuclear DNA-coded genes
-
Kuraku S., Hoshiyama D., Katoh K., Suga H., and Miyata T. Monophyly of lampreys and hagfishes supported by nuclear DNA-coded genes. J. Mol. Evol. 49 (1999) 729-735
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 729-735
-
-
Kuraku, S.1
Hoshiyama, D.2
Katoh, K.3
Suga, H.4
Miyata, T.5
-
76
-
-
0031287774
-
Pareiasaur phylogeny and the origin of turtles
-
Lee M.S.Y. Pareiasaur phylogeny and the origin of turtles. Zool. J. Linn. Soc. 120 (1997) 197-280
-
(1997)
Zool. J. Linn. Soc.
, vol.120
, pp. 197-280
-
-
Lee, M.S.Y.1
-
77
-
-
0035605630
-
Molecules, morphology, and the monophyly of diapsid reptiles
-
Lee M.S.Y. Molecules, morphology, and the monophyly of diapsid reptiles. Contributions to Zoology 70 (2001) 1-22
-
(2001)
Contributions to Zoology
, vol.70
, pp. 1-22
-
-
Lee, M.S.Y.1
-
78
-
-
19044373497
-
Polytomies and Bayesian phylogenetic inference
-
Lewis P.O., Holder M.T., and Holsinger K.E. Polytomies and Bayesian phylogenetic inference. Syst. Biol. 54 (2005) 241-253
-
(2005)
Syst. Biol.
, vol.54
, pp. 241-253
-
-
Lewis, P.O.1
Holder, M.T.2
Holsinger, K.E.3
-
79
-
-
0030746467
-
The interrelationships of the echinoderm classes: morphological and molecular evidence
-
Littlewood D.T.J., Smith A.B., Clough K.A., and Emson R.H. The interrelationships of the echinoderm classes: morphological and molecular evidence. Biol. J. Linn. Soc. 61 (1997) 409-438
-
(1997)
Biol. J. Linn. Soc.
, vol.61
, pp. 409-438
-
-
Littlewood, D.T.J.1
Smith, A.B.2
Clough, K.A.3
Emson, R.H.4
-
80
-
-
0037314495
-
Utility of complete large and small subunit rRNA genes in resolving the phylogeny of the Neodermata (Platyhelminthes): implications and a review of the cercomer theory
-
Lockyer A.E., Olson P.D., and Littlewood D.T.J. Utility of complete large and small subunit rRNA genes in resolving the phylogeny of the Neodermata (Platyhelminthes): implications and a review of the cercomer theory. Biol. J. Linn. Soc. 78 (2003) 155-171
-
(2003)
Biol. J. Linn. Soc.
, vol.78
, pp. 155-171
-
-
Lockyer, A.E.1
Olson, P.D.2
Littlewood, D.T.J.3
-
81
-
-
0002634112
-
An evaluation of jaw suspension in sharks
-
Maisey J.G. An evaluation of jaw suspension in sharks. Am. Mus. Novit. 2706 (1980) 1-17
-
(1980)
Am. Mus. Novit.
, vol.2706
, pp. 1-17
-
-
Maisey, J.G.1
-
82
-
-
0002409153
-
The anatomy and interrelationships of Mesozoic hybodont sharks
-
Maisey J.G. The anatomy and interrelationships of Mesozoic hybodont sharks. Am. Mus. Novit. 2724 (1982) 1-48
-
(1982)
Am. Mus. Novit.
, vol.2724
, pp. 1-48
-
-
Maisey, J.G.1
-
83
-
-
0002214833
-
Cranial anatomy of Hybodus basanus Egerton from the Lower Cretaceous of England
-
Maisey J.G. Cranial anatomy of Hybodus basanus Egerton from the Lower Cretaceous of England. Am. Mus. Novit. 2758 (1983) 1-64
-
(1983)
Am. Mus. Novit.
, vol.2758
, pp. 1-64
-
-
Maisey, J.G.1
-
84
-
-
0000229302
-
Heads and tails: a chordate phylogeny
-
Maisey J.G. Heads and tails: a chordate phylogeny. Cladistics 2 (1986) 201-256
-
(1986)
Cladistics
, vol.2
, pp. 201-256
-
-
Maisey, J.G.1
-
85
-
-
27144554201
-
The Upper Jurassic hexanchoid elasmobranch Notidanoides n.g
-
Maisey J.G. The Upper Jurassic hexanchoid elasmobranch Notidanoides n.g. Neues Jahrb. Palaeontol. Geol. Abh. 172 (1986) 83-106
-
(1986)
Neues Jahrb. Palaeontol. Geol. Abh.
, vol.172
, pp. 83-106
-
-
Maisey, J.G.1
-
86
-
-
0002322336
-
Hamiltonichthyes mapesi, g. & sp. Nov. (Chondrichthyes; Elasmobranchii), from the Upper Pennsylvanian of Kansas
-
Maisey J.G. Hamiltonichthyes mapesi, g. & sp. Nov. (Chondrichthyes; Elasmobranchii), from the Upper Pennsylvanian of Kansas. Am. Mus. Novit. 2931 (1989) 1-42
-
(1989)
Am. Mus. Novit.
, vol.2931
, pp. 1-42
-
-
Maisey, J.G.1
-
88
-
-
0008164691
-
Notadinus
-
Eldridge N., and Stanley S. (Eds), Springer-Verlag, New York
-
Maisey J.G., and Wolfram K. Notadinus. In: Eldridge N., and Stanley S. (Eds). Living Fossils (1984), Springer-Verlag, New York 170-180
-
(1984)
Living Fossils
, pp. 170-180
-
-
Maisey, J.G.1
Wolfram, K.2
-
89
-
-
84985372248
-
Early vertebrate evolution: Pharyngeal structure and the origin of the gnathostomes
-
Mallatt J. Early vertebrate evolution: Pharyngeal structure and the origin of the gnathostomes. J. Zool. (Lond.) 204 (1984) 169-183
-
(1984)
J. Zool. (Lond.)
, vol.204
, pp. 169-183
-
-
Mallatt, J.1
-
90
-
-
0010048886
-
Hagfish do not resemble ancestral vertebrates
-
Mallatt J. Hagfish do not resemble ancestral vertebrates. J. Morphol. 232 (1997) 293
-
(1997)
J. Morphol.
, vol.232
, pp. 293
-
-
Mallatt, J.1
-
91
-
-
0038593428
-
Fossil sister group of craniates: predicted and found
-
Mallatt J., and Chen J.Y. Fossil sister group of craniates: predicted and found. J. Morphol. 258 (2003) 1-31
-
(2003)
J. Morphol.
, vol.258
, pp. 1-31
-
-
Mallatt, J.1
Chen, J.Y.2
-
92
-
-
33746693659
-
Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch
-
Mallatt J., and Giribet G. Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch. Mol. Phylogenet. Evol. 40 (2006) 772-794
-
(2006)
Mol. Phylogenet. Evol.
, vol.40
, pp. 772-794
-
-
Mallatt, J.1
Giribet, G.2
-
93
-
-
0031796425
-
28S and 18S rDNA sequences support the monophyly of lampreys and hagfishes
-
Mallatt J., and Sullivan J. 28S and 18S rDNA sequences support the monophyly of lampreys and hagfishes. Mol. Biol. Evol. 15 (1998) 1706-1718
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1706-1718
-
-
Mallatt, J.1
Sullivan, J.2
-
94
-
-
0036184428
-
Testing the new animal phylogeny: First use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes
-
Mallatt J., and Winchell C.J. Testing the new animal phylogeny: First use of combined large-subunit and small-subunit rRNA gene sequences to classify the protostomes. Mol. Biol. Evol. 19 (2002) 289-301
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 289-301
-
-
Mallatt, J.1
Winchell, C.J.2
-
95
-
-
0003194127
-
The relationships of lampreys to hagfishes: a spectral analysis of ribosomal DNA sequences
-
Ahlberg P.E. (Ed), Taylor and Francis, London
-
Mallatt J., Sullivan J., and Winchell C.J. The relationships of lampreys to hagfishes: a spectral analysis of ribosomal DNA sequences. In: Ahlberg P.E. (Ed). Major Events in Early Vertebrate Evolution: Palaeontology, Phylogeny, and Development (2001), Taylor and Francis, London 106-118
-
(2001)
Major Events in Early Vertebrate Evolution: Palaeontology, Phylogeny, and Development
, pp. 106-118
-
-
Mallatt, J.1
Sullivan, J.2
Winchell, C.J.3
-
96
-
-
0347457283
-
Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin
-
Mallatt J.M., Garey J.R., and Shultz J.W. Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin. Mol. Phylogenet. Evol. 31 (2004) 178-191
-
(2004)
Mol. Phylogenet. Evol.
, vol.31
, pp. 178-191
-
-
Mallatt, J.M.1
Garey, J.R.2
Shultz, J.W.3
-
97
-
-
0026581378
-
Substitution bias, weighted parsimony, and amniote phylogeny as inferred from 18S rRNA sequences
-
Marshall C.R. Substitution bias, weighted parsimony, and amniote phylogeny as inferred from 18S rRNA sequences. Mol. Biol. Evol. 9 (1992) 370-373
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 370-373
-
-
Marshall, C.R.1
-
98
-
-
84877589449
-
Phylogeny of Batoidea
-
Carrier J.C., Musick J.A., and Heithaus M.R. (Eds), CRC Press, New York
-
McEachran J.D., and Aschliman N. Phylogeny of Batoidea. In: Carrier J.C., Musick J.A., and Heithaus M.R. (Eds). Biology of Sharks and their Relatives (2004), CRC Press, New York 79-113
-
(2004)
Biology of Sharks and their Relatives
, pp. 79-113
-
-
McEachran, J.D.1
Aschliman, N.2
-
99
-
-
0001868841
-
Interrelationships of the batoid fishes (Chondrichthyes: Batoidea)
-
Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds), Academic Press, San Diego
-
McEachran J.D., Dunn K.A., and Miyake T. Interrelationships of the batoid fishes (Chondrichthyes: Batoidea). In: Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds). Interrelationships of Fishes (1996), Academic Press, San Diego 63-84
-
(1996)
Interrelationships of Fishes
, pp. 63-84
-
-
McEachran, J.D.1
Dunn, K.A.2
Miyake, T.3
-
100
-
-
0035859814
-
Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA
-
Medina M., Collins A.G., Silberman J.D., and Sogin M.L. Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA. Proc. Natl. Acad. Sci. USA 98 (2001) 9707-9712
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9707-9712
-
-
Medina, M.1
Collins, A.G.2
Silberman, J.D.3
Sogin, M.L.4
-
101
-
-
0000378233
-
Über die systematische Stellung von Balanoglossus
-
Metschnikoff V.E. Über die systematische Stellung von Balanoglossus. Zool. Anz. 4 (1881) 139-157
-
(1881)
Zool. Anz.
, vol.4
, pp. 139-157
-
-
Metschnikoff, V.E.1
-
102
-
-
0842344613
-
Recent advances in the (molecular) phylogeny of vertebrates
-
Meyer A., and Zardoya R. Recent advances in the (molecular) phylogeny of vertebrates. Annu. Rev. Ecol. Evol. Syst. 34 (2003) 311-338
-
(2003)
Annu. Rev. Ecol. Evol. Syst.
, vol.34
, pp. 311-338
-
-
Meyer, A.1
Zardoya, R.2
-
103
-
-
22044450491
-
The phylogenetic position of toadfishes (order Batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genome sequences
-
Miya M., Satoh T.P., and Nishida M. The phylogenetic position of toadfishes (order Batrachoidiformes) in the higher ray-finned fish as inferred from partitioned Bayesian analysis of 102 whole mitochondrial genome sequences. Biol. J. Linn. Soc. 85 (2005) 289-306
-
(2005)
Biol. J. Linn. Soc.
, vol.85
, pp. 289-306
-
-
Miya, M.1
Satoh, T.P.2
Nishida, M.3
-
104
-
-
0032028997
-
Amphioxus mitochondrial DNA, chordate phylogeny, and the limits of inference based on comparisons of sequences
-
Naylor G.J.P., and Brown W.M. Amphioxus mitochondrial DNA, chordate phylogeny, and the limits of inference based on comparisons of sequences. Syst. Biol. 47 (1998) 61-76
-
(1998)
Syst. Biol.
, vol.47
, pp. 61-76
-
-
Naylor, G.J.P.1
Brown, W.M.2
-
105
-
-
24944505624
-
The new head hypothesis revisited
-
Northcutt R.G. The new head hypothesis revisited. J. Exp. Zool. B 304 (2005) 274-297
-
(2005)
J. Exp. Zool. B
, vol.304
, pp. 274-297
-
-
Northcutt, R.G.1
-
106
-
-
33745135433
-
Lophotrochozoan phylogeny assessed with LSU and SSU data: Evidence of lophophorate polyphyly
-
Passamaneck Y.J., and Halanych K.M. Lophotrochozoan phylogeny assessed with LSU and SSU data: Evidence of lophophorate polyphyly. Mol. Phylogen. Evol. 40 (2006) 20-28
-
(2006)
Mol. Phylogen. Evol.
, vol.40
, pp. 20-28
-
-
Passamaneck, Y.J.1
Halanych, K.M.2
-
107
-
-
3042744353
-
Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences
-
Passamaneck Y.J., Schander C., and Halanych K.M. Investigation of molluscan phylogeny using large-subunit and small-subunit nuclear rRNA sequences. Mol. Phylogen. Evol. 32 (2004) 25-38
-
(2004)
Mol. Phylogen. Evol.
, vol.32
, pp. 25-38
-
-
Passamaneck, Y.J.1
Schander, C.2
Halanych, K.M.3
-
108
-
-
0034777365
-
Mathematical elegance with biochemical realism: the covarion model of molecular evolution
-
Penny D., McComish B.J., Charleston M.A., and Hendy M.D. Mathematical elegance with biochemical realism: the covarion model of molecular evolution. J. Mol. Evol. 53 (2001) 711-723
-
(2001)
J. Mol. Evol.
, vol.53
, pp. 711-723
-
-
Penny, D.1
McComish, B.J.2
Charleston, M.A.3
Hendy, M.D.4
-
109
-
-
2442438948
-
Isolation of Hox and parahox genes in the hemichordate Ptychodera flava and the evolution of deuterostome Hox genes
-
Peterson K.J. Isolation of Hox and parahox genes in the hemichordate Ptychodera flava and the evolution of deuterostome Hox genes. Mol. Phylogen. Evol. 31 (2004) 1208-1215
-
(2004)
Mol. Phylogen. Evol.
, vol.31
, pp. 1208-1215
-
-
Peterson, K.J.1
-
110
-
-
17744386162
-
Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa and Protostomia
-
Philippe H., Lartillot N., and Brinkmann H. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa and Protostomia. Mol. Biol. Evol. 22 (2005) 1246-1253
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1246-1253
-
-
Philippe, H.1
Lartillot, N.2
Brinkmann, H.3
-
111
-
-
9644301241
-
Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests
-
Posada D., and Buckley T. Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 53 (2004) 793-808
-
(2004)
Syst. Biol.
, vol.53
, pp. 793-808
-
-
Posada, D.1
Buckley, T.2
-
112
-
-
0031773680
-
MODELTEST: testing the model of DNA substitution
-
Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
-
(1998)
Bioinformatics
, vol.14
, pp. 817-818
-
-
Posada, D.1
Crandall, K.A.2
-
113
-
-
34249315670
-
-
Rambaut, A., Grassly, N.C., 2001. Seq-Gen sequence generator: an application for the Monte-Carlo simulation of DNA sequence evolution along phylogenetic trees. Version 1. 2. 5.
-
-
-
-
114
-
-
0033381933
-
The origin and early evolution of turtles
-
Rieppel O., and Reisz R.R. The origin and early evolution of turtles. Annu. Rev. Ecol. Syst. 30 (1999) 1-22
-
(1999)
Annu. Rev. Ecol. Syst.
, vol.30
, pp. 1-22
-
-
Rieppel, O.1
Reisz, R.R.2
-
118
-
-
27744534795
-
Chordate phylogeny and development
-
Cracroft J., and Donoghue M.J. (Eds), Oxford University Press, Oxford
-
Rowe T. Chordate phylogeny and development. In: Cracroft J., and Donoghue M.J. (Eds). Assembling the Tree of Life (2004), Oxford University Press, Oxford 384-409
-
(2004)
Assembling the Tree of Life
, pp. 384-409
-
-
Rowe, T.1
-
119
-
-
21344462368
-
Key characters uniting hemichordates and chordates: homologies or homoplasies?
-
Ruppert E.E. Key characters uniting hemichordates and chordates: homologies or homoplasies?. Can. J. Zool. 83 (2005) 8-23
-
(2005)
Can. J. Zool.
, vol.83
, pp. 8-23
-
-
Ruppert, E.E.1
-
120
-
-
4544261553
-
-
Thomson, Brooks/Cole, Belmont, CA
-
Ruppert E.E., Fox R.S., and Barnes R.D. Invertebrate Zoology, A Functional Evolutionary Approach. seventh ed. (2004), Thomson, Brooks/Cole, Belmont, CA
-
(2004)
Invertebrate Zoology, A Functional Evolutionary Approach. seventh ed.
-
-
Ruppert, E.E.1
Fox, R.S.2
Barnes, R.D.3
-
121
-
-
0035156561
-
RNA sequence evolution with secondary structure constraints: Comparison of substitution rate models using maximum-likelihood methods
-
Savill N.J., Hoyle D.C., and Higgs P.G. RNA sequence evolution with secondary structure constraints: Comparison of substitution rate models using maximum-likelihood methods. Genetics 157 (2001) 399-411
-
(2001)
Genetics
, vol.157
, pp. 399-411
-
-
Savill, N.J.1
Hoyle, D.C.2
Higgs, P.G.3
-
122
-
-
0001618565
-
Deuterostome monophyly and phylogeny
-
Schaeffer B. Deuterostome monophyly and phylogeny. Evol. Biol. 21 (1987) 179-235
-
(1987)
Evol. Biol.
, vol.21
, pp. 179-235
-
-
Schaeffer, B.1
-
123
-
-
33646058542
-
The complete mitochondrial genomes of the sea lily Gymnocrinus richeri and the feather star Phanogenia gracilis: Signature nucleotide bias and unique nad4L gene rearrangement within crinoids
-
Scouras A., and Smith M.J. The complete mitochondrial genomes of the sea lily Gymnocrinus richeri and the feather star Phanogenia gracilis: Signature nucleotide bias and unique nad4L gene rearrangement within crinoids. Mol. Phylogenet. Evol. 39 (2006) 323-334
-
(2006)
Mol. Phylogenet. Evol.
, vol.39
, pp. 323-334
-
-
Scouras, A.1
Smith, M.J.2
-
124
-
-
0032766857
-
Multiple comparisons of log-likelihoods with applications to phylogenetic inference
-
Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1114-1116
-
-
Shimodaira, H.1
Hasegawa, M.2
-
126
-
-
0002876005
-
Phylogenetic Interrelationships of Neoselachians (Chondrichthyes: Euselachii)
-
Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds), Academic Press, San Diego
-
Shirai S. Phylogenetic Interrelationships of Neoselachians (Chondrichthyes: Euselachii). In: Stiassny M.L.J., Parenti L.R., and Johnson G.D. (Eds). Interrelationships of Fishes (1996), Academic Press, San Diego 9-34
-
(1996)
Interrelationships of Fishes
, pp. 9-34
-
-
Shirai, S.1
-
127
-
-
33744725839
-
To group or not to group: the taxonomic position of Xyloplax
-
Burke R.D., Mladinov P.V., Lambert P., and Parsley R.L. (Eds), Balkema, Rotterdam
-
Smith A.B. To group or not to group: the taxonomic position of Xyloplax. In: Burke R.D., Mladinov P.V., Lambert P., and Parsley R.L. (Eds). Echinoderm Biology (1988), Balkema, Rotterdam 12-23
-
(1988)
Echinoderm Biology
, pp. 12-23
-
-
Smith, A.B.1
-
129
-
-
34249331898
-
-
Stock, D.W., 1992. A molecular phylogeny of fishes. University of Illinois at Urbana-Champagne. Ph.D. thesis.
-
-
-
-
130
-
-
0026645940
-
Evidence from 18S rRNA sequences that lampreys and hagfishes form a natural group
-
Stock D.W., and Whitt G.S. Evidence from 18S rRNA sequences that lampreys and hagfishes form a natural group. Science 257 (1992) 787-789
-
(1992)
Science
, vol.257
, pp. 787-789
-
-
Stock, D.W.1
Whitt, G.S.2
-
133
-
-
0001336205
-
Phylogenetic inference
-
Hillis D.M., Moritz C., and Mable B.K. (Eds), Sinauer Associates, Sunderland, MA
-
Swofford D.L., Olsen G.J., Waddell P.J., and Hillis D.M. Phylogenetic inference. In: Hillis D.M., Moritz C., and Mable B.K. (Eds). Molecular Systematics. second ed. (1996), Sinauer Associates, Sunderland, MA 407-514
-
(1996)
Molecular Systematics. second ed.
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
134
-
-
0037323924
-
Molecular phylogeny of early vertebrates: monophyly of agnathans as revealed by sequences of 35 genes
-
Takezaki N., Figueroa F., Zaleska-Rutczynska Z., and Klein J. Molecular phylogeny of early vertebrates: monophyly of agnathans as revealed by sequences of 35 genes. Mol. Biol. Evol. 20 (2003) 287-292
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 287-292
-
-
Takezaki, N.1
Figueroa, F.2
Zaleska-Rutczynska, Z.3
Klein, J.4
-
135
-
-
3242743113
-
The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes
-
Takezaki N., Figueroa F., Zaleska-Rutczynska Z., Takahata N., and Klein J. The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes. Mol. Biol. Evol. 21 (2004) 1512-1524
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1512-1524
-
-
Takezaki, N.1
Figueroa, F.2
Zaleska-Rutczynska, Z.3
Takahata, N.4
Klein, J.5
-
136
-
-
0038191149
-
Combined large and small subunit ribosomal RNA phylogenies support a basal position of the acoelomorph flatworms
-
Telford M.J., Lockyer A.E., Cartwright-Finch C., and Littlewood D.T.J. Combined large and small subunit ribosomal RNA phylogenies support a basal position of the acoelomorph flatworms. Proc. R. Soc. Lond. B 270 (2003) 1077-1083
-
(2003)
Proc. R. Soc. Lond. B
, vol.270
, pp. 1077-1083
-
-
Telford, M.J.1
Lockyer, A.E.2
Cartwright-Finch, C.3
Littlewood, D.T.J.4
-
137
-
-
16344384719
-
Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: Examples from the Bilateria
-
Telford M.J., Wise M.J., and Gowri-Shankar V. Consideration of RNA secondary structure significantly improves likelihood-based estimates of phylogeny: Examples from the Bilateria. Mol. Biol. Evol. 22 (2005) 1129-1136
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1129-1136
-
-
Telford, M.J.1
Wise, M.J.2
Gowri-Shankar, V.3
-
138
-
-
0028243693
-
Deuterostome phylogeny and the sister group of the chordates: evidence from molecules and morphology
-
Turbeville J.M., Shultz J.R., and Raff R.A. Deuterostome phylogeny and the sister group of the chordates: evidence from molecules and morphology. Mol. Biol. Evol. 11 (1994) 648-655
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 648-655
-
-
Turbeville, J.M.1
Shultz, J.R.2
Raff, R.A.3
-
139
-
-
0035339920
-
Molecular phylogenetics: state-of-the-art methods for looking into the past
-
Whelan S., Lio P., and Goldman N. Molecular phylogenetics: state-of-the-art methods for looking into the past. Trends Genet. 17 (2001) 262-272
-
(2001)
Trends Genet.
, vol.17
, pp. 262-272
-
-
Whelan, S.1
Lio, P.2
Goldman, N.3
-
140
-
-
0036431235
-
Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support
-
Wilcox T.P., Zwickl D.J., Heath T.A., and Hillis D.M. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Mol. Phylogenet. Evol. 25 (2002) 361-371
-
(2002)
Mol. Phylogenet. Evol.
, vol.25
, pp. 361-371
-
-
Wilcox, T.P.1
Zwickl, D.J.2
Heath, T.A.3
Hillis, D.M.4
-
141
-
-
0000376652
-
The phylogeny and classification of reptiles
-
Willinston S.W. The phylogeny and classification of reptiles. J. Geol. 25 (1917) 411-421
-
(1917)
J. Geol.
, vol.25
, pp. 411-421
-
-
Willinston, S.W.1
-
142
-
-
0036097948
-
Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data
-
Winchell C.J., Sullivan J., Cameron C.B., Swalla B.J., and Mallatt J. Evaluating hypotheses of deuterostome phylogeny and chordate evolution with new LSU and SSU ribosomal DNA data. Mol. Biol. Evol. 19 (2002) 762-776
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 762-776
-
-
Winchell, C.J.1
Sullivan, J.2
Cameron, C.B.3
Swalla, B.J.4
Mallatt, J.5
-
143
-
-
1642506104
-
Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes
-
Winchell C.J., Martin M.P., and Mallatt J. Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes. Mol. Phylogen. Evol. 31 (2004) 214-224
-
(2004)
Mol. Phylogen. Evol.
, vol.31
, pp. 214-224
-
-
Winchell, C.J.1
Martin, M.P.2
Mallatt, J.3
-
144
-
-
34249327594
-
-
Wray, G.A., 1998. Echinodermata. Spiny-skinned animals: sea urchins, starfish, and their allies. Tree of Life Web Project. Available from: http://tolweb.org.
-
-
-
-
145
-
-
0038487293
-
18S ribosomal rRNA and tetrapod phylogeny
-
Xia X., Xie Z., and Kjer K.M. 18S ribosomal rRNA and tetrapod phylogeny. Syst. Biol. 52 (2003) 283-295
-
(2003)
Syst. Biol.
, vol.52
, pp. 283-295
-
-
Xia, X.1
Xie, Z.2
Kjer, K.M.3
-
146
-
-
11144292141
-
Complete nucleotide squence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates
-
Yokobori S., Oshima T., and Wada H. Complete nucleotide squence of the mitochondrial genome of Doliolum nationalis with implications for evolution of urochordates. Mol. Phylogenet. Evol. 34 (1999) 273-283
-
(1999)
Mol. Phylogenet. Evol.
, vol.34
, pp. 273-283
-
-
Yokobori, S.1
Oshima, T.2
Wada, H.3
-
147
-
-
0032564364
-
Complete mitochondrial genome suggests diapsid affinities of turtles
-
Zardoya R., and Meyer A. Complete mitochondrial genome suggests diapsid affinities of turtles. Proc. Natl. Acad. Sci. USA 95 (1998) 14226-14231
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14226-14231
-
-
Zardoya, R.1
Meyer, A.2
-
148
-
-
0034955242
-
The evolutionary position of turtles revised
-
Zardoya R., and Meyer A. The evolutionary position of turtles revised. Naturwissenschaften 88 (2001) 193-200
-
(2001)
Naturwissenschaften
, vol.88
, pp. 193-200
-
-
Zardoya, R.1
Meyer, A.2
-
149
-
-
0031924361
-
Searching for the closest living relative(s) of tetrapods through evolutionary analyses of mitochondrial and nuclear data
-
Zardoya R., Cao Y., Hasegawa M., and Meyer A. Searching for the closest living relative(s) of tetrapods through evolutionary analyses of mitochondrial and nuclear data. Mol. Biol. Evol. 15 (1998) 506-517
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 506-517
-
-
Zardoya, R.1
Cao, Y.2
Hasegawa, M.3
Meyer, A.4
-
150
-
-
0242321830
-
Complete nucleotide sequence of the mitochondrial genome of a salamander, Mertensiella luschani
-
Zardoya R., Malaga-Trillo E., Veith M., and Meyer A. Complete nucleotide sequence of the mitochondrial genome of a salamander, Mertensiella luschani. Gene 317 (2003) 17-27
-
(2003)
Gene
, vol.317
, pp. 17-27
-
-
Zardoya, R.1
Malaga-Trillo, E.2
Veith, M.3
Meyer, A.4
-
151
-
-
21344453544
-
Molecular phylogeny of the protochordates: chordate evolution
-
Zeng L., and Swalla B.J. Molecular phylogeny of the protochordates: chordate evolution. Can. J. Zool. 83 (2005) 24-33
-
(2005)
Can. J. Zool.
, vol.83
, pp. 24-33
-
-
Zeng, L.1
Swalla, B.J.2
|