The Ciona intestinalis genome: When the constraints are off

BioEssays

Volumn 25, Issue 6, 2003, Pages 529-532

  Holland, Linda Z ^a   Gibson Brown, Jeremy J ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b WASHINGTON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ASCIDIACEA; CELL FATE; CELL LINEAGE; CIONA INTESTINALIS; COMPARATIVE GENOMIC HYBRIDIZATION; DEVELOPMENTAL BIOLOGY; EMBRYO; EVOLUTION; GENE DUPLICATION; GENE SEQUENCE; GENOME; INVERTEBRATE; MORPHOGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE;

NASA DISCIPLINE EVOLUTIONARY BIOLOGY; NON-NASA CENTER;

ANIMALS; CELL NUCLEUS; CIONA INTESTINALIS; EVOLUTION, MOLECULAR; GENOME; PHYLOGENY;

ASCIDIA; BILATERIA; BRANCHIOSTOMA LANCEOLATUM; CIONA INTESTINALIS; ECHINODERMATA; HEMICHORDATA; INVERTEBRATA; UROCHORDATA; VERTEBRATA;

EID: 0037781970     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/bies.10302     Document Type: Article

References (32)

1. Dehall P, et al. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science 2002;298:2157-2167.
2. th ser. 1867;11(4):1-17+pl. I-III.
3. Kowalevsky A. Beiträge zur Entwicklungsgeschichte der Tunicaten. (Vorlaufige Mitteilung). Nachrichten Gesellschaft Wissenschaften Göttingen. 1868;19:401-415.
4. Darwin C. The Descent of Man, and Selection in Relation to Sex. 1872. 2 vols. D. New York: Appleton and Co.
5. rd edition of Anthropogenie.
6. Beeson RJ. Bridging the gap: the problem of vertebrate ancestry, 1859-1875. Ph.D. Dissertation. Oregon State University, Corvallis, OR, USA 1978;UMI Dissertation Services, Ann Arbor, MI, USA.
7. Semper C. Die Stammesverwandtschaft der Wirbeltiere und Wirbellosen. Arb Zoo-Zootom Inst Würzburg. 1875;2:25-76+pl. III-V.
8. Dorhn A. Der Ursprung der Wirbeltiere und des Princip des Finctionwechsels: Genealogische Skizzen. 1875;1-87. Leipzig: Wilhelm Englmann.
9. Garstang W. The morphology of the Tunicata, and its bearings on the phylogeny of the Chordata. Quart J Microsc Sci 1928;72:51-187.
10. Willey A. Studies of the Protochordata I. Quart J Microsc Sci 1893;3:317-360.
11. Holland LZ, Gorsky G, Fenaux R. Fertilization in Oikopleura dioica (Tunicata, Appendicularia): Acrosome reaction, cortical reaction and sperm-egg fusion. Zoomorphol 1988;108:229-244.
12. Wada H, Satoh N. Details of the evolutionary history from invertebrates to vertebrates, as deduced from the sequences of 18S rDNA. Proc Natl Acad Sci USA 1994;91:1801-1804.
13. Lacalli TC. New perspectives on the evolution of protochordate sensory and locomotory systems, and the origin of brains and heads. Phil Trans Roy Soc Lond B 2001;356:1565-1572.
14. Holland LZ. Heads or tails? Amphioxus and the evolution of anterior-posterior patterning in deuterostomes. Dev Biol 2002;241:209-228.
15. Ferrier DEK, Holland PWH. Ciona intestinalis ParaHox genes: evolution of Hox/ParaHox cluster integrity, developmental mode, and temporal colinearity. Mol Phylogen Evol 2002;24:412-417.
16. Oda H, Wada H, Tagawa K, Akiyama-Oda Y, Satoh N, Humphreys T, Zhang S, Tsukita S. A novel amphioxus cadherin that localizes to epithelial adherens junctions has an unusual domain organization with implications for chordate phylogeny. Evol Dev 2002;4:426-434.
17. Wada H. Evolutionary history of free-swimming and sessile lifestyles in urochordates as deduced from 18S rDNA molecular phylogeny. Mol Biol Evol 1998;15:1189-1194.
18. Swalla BJ, Cameron CB, Corley LS, Garey JR. Urochordates are monophyletic within the deuterostomes. Sys Biol 2000;49:52-64.
19. Aboobaker AA, Blaxter ML. Hox gene loss during dynamic evolution of the nematode cluster. Curr Biol 2003;13:37-40.
20. Seo H-C, et al. Miniature genome in the marine chordate Oikopleura dioica. Science 2001;294:2506.
21. Simmen MW, Bird A. Sequence analysis of transposable elements in the sea squirt, Ciona intestinalis. Mol Biol Evol 2000;17:1685-1694.
22. Simmen MW, Leitgeb S, Charlton J, Jones SJ, Harris BR, Clark VH, Bird A. Nonmethylated transposable elements and methylated genes in a chordate genome. Science 1999;283:1164-1167.
23. Yokobori S-I, Ueda T, Feldmaier-Fuchs G, Pääbo S, Uueshima R, Kondow A, Nishikawa K, Watanabe K. Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata). Genetics 1999;153:1851-1862.
24. Spruyt N, Delarbre C, Gachelin G, Laudet V. Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates. Nucl Acids Res 1998;26:3279-3285.
25. Boore JL. Animal mitochondrial genomes. Nucl Acids Res 1999;27:1767-1780.
26. Lengyel JA, Iwaki DD. It takes guts: The Drosophila hindgut as a model system for organogenesis. Dev Biol 2002;243:1-19.
27. Korswagen HC. Canonical and non-canonical Wnt signaling pathways in Caenorhabditis elegans: variations on a common signaling theme. Bioessays 2002;24:801-810.
28. McGhee JD. Homologous tails? Or tales of homology? BioEssays 2000;22:781-785.
29. Woollard A, Hodgkin J. The Caenorhabditis elegans fate-determining gene mab-9 encodes a T-box protein required to pattern the posterior hindgut. Genes Dev 2000;14:596-603.
30. Castillo-Davis CII, Hartl DL. Genome evolution and developmental constraint in Caenorhabditis elegans. Mol Biol Evol 2002;19:728-735.
31. Holland ND, Chen J. Origin and early evolution of the vertebrates: new insights from advances in molecular biology, anatomy, and palaeontology. BioEssays 2001;23:142-151.
32. Mallatt J, Chen JY. Fossil sister group of craniates: predicted and found. J Morphol 2003;257:in press.