Testing morphologically based phylogenetic theories within the cartilaginous fishes with molecular data, with special reference to the catshark family (Chondrichthyes; Scyliorhinidae) and the interrelationships within them

Molecular Phylogenetics and Evolution

Volumn 39, Issue 2, 2006, Pages 384-391

  Human, Brett A ^a,b   Owen, E Patricia ^a   Compagno, Leonard J V ^b   Harley, Eric H ^a  

^a UNIVERSITY OF CAPE TOWN   (South Africa)

^b IZIKO SOUTH AFRICAN MUSEUM   (South Africa)

Author keywords

Catsharks; Chondrichthyes; Cytochrome b; Elasmobranchii; NADH 2; NADH 4; Phylogeny; Scyliorhinidae; Southern Africa

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA; PROTEIN SUBUNIT; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE;

ANIMAL; ARTICLE; BAYES THEOREM; CLASSIFICATION; GENETICS; HISTOLOGY; PHYLOGENY; SHARK;

ANIMALS; BAYES THEOREM; CYTOCHROMES B; DNA, MITOCHONDRIAL; NADH DEHYDROGENASE; PHYLOGENY; PROTEIN SUBUNITS; SHARKS;

BATOIDEA; CARCHARHINIFORMES; CHONDRICHTHYES; ELASMOBRANCHII; HAPLOBLEPHARUS EDWARDSII; HETERODONTIFORMES; HOLOHALAELURUS; LAMNIFORMES; SCYLIORHINIDAE;

EID: 33646067108     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2005.09.009     Document Type: Article

References (38)

1. Arnason U., Gullberg A., and Janke A. Molecular phylogenetics of gnathostomous (jawed) fishes: old bones, new cartilage. Zool. Scr. 30 4 (2001) 249-255
2. Bass A.J., D'Aubrey J.D., and Kistnasamy N. Sharks of the East coast of southern Africa. II. The families Scyliorhinidae and Psuedotriakidae. Inv. Rept. Ocean. Res. Inst. 37 (1975) 1-64
3. Bigelow, H.B., Schroeder, W.C., 1948. Fishes of the North West Atlantic. Part I. Lancelets, Cyclostomes, and Sharks. Chapter 3. Sharks. Mem. Sears Found. Mar. Res. vol. 1., pp. 59-546.
4. Cao Y., Waddell P.J., Okada N., and Hasegawa M. The complete mitochondrial DNA sequence of the shark Mustelus manazo: Evaluating rooting contradictions to living bony vertebrates. Mol. Biol. Evol. 15 12 (1998) 1637-1646
5. Cappetta H. Chondrichthyes II. Mesozoic and Cenozoic Elasmobranchii. In: Schultze H.P. (Ed). Handbook of Paleoichthyology Vol. 3B (1987), Gustav Fischer Verlag, Stuttgart 193
6. Compagno, L.J.V., 1973. Interrelationships of living elasmobranchs. In: Greenwood, P.H., Miles, R.S., Patterson, C. (Eds.), Interrelationships of Fishes. Zool. J. Linn. Soc., 15-61.
7. Compagno L.J.V. Phyletic relationships of living sharks and rays. Am. Zool. 17 2 (1977) 303-322
8. Compagno, L.J.V., 1984a. FAO Species Catalogue, vol. 4. Sharks of the World. An Annotated and Illustrated Catalogue of Shark Species Known to Date. Part 1. Hexanchiformes to Lamniformes. FAO Fisheries Synopsis No. 125, 1-249.
9. Compagno, L.J.V., 1984b. FAO Species Catalogue, vol. 4. Sharks of the World. An Annotated and Illustrated Catalogue of Shark Species Known to Date. Part 2. Carcharhiniformes. FAO Fisheries Synopsis No.125, 251-655.
10. Compagno, L.J.V., 1988. Sharks of the Order Carcharhiniformes. First Reprint, 2003. The Blackburn Press, Caldwell, New Jersey, xii + 572 pp.
11. Compagno, L.J.V., 1990. Relationships of the megamouth shark, Megachasma pelagios (Lamniformes: Megachasmidae), with comments on its feeding habits. In: Pratt, H.L., Gruber, S.H., Taniuchi, T. (Eds.), Elasmobranchs as Living Resources: Advances in the Biology, Ecology, Systematics, and the Status of the Fisheries. NOAA Tech. Rep. NMFS 90, pp. 357-379.
12. Compagno L.J.V. An overview of chondrichthyan systematics and biodiversity in southern Africa. Trans. R. Soc. S. Afr. 54 1 (1999) 75-120
13. Compagno, L.J.V., 2001. Sharks of the World. An Annotated and Illustrated Catalogue of Shark Species Known to Date, vol. 2. Bullhead, Mackerel and Carpet sharks (Heterodontiformes, Lamniformes and Orectolobiformes). FAO Species Catalogue for Fishery Purposes. No. 1, vol. 2. FAO, Rome, 269 pp.
14. Compagno, L.J.V., 2005. Checklist of living Chondrichthyes. Chapter 16. In: Hamlett, W.C. (Ed.), Reproductive Biology and Phylogeny of Chondrichthyes, pp. 503-548.
15. Compagno, L.J.V., Human, B.A., 2003. Checklist of chondrichthyans for the subequatorial African region, Atlantic, Indian, and Antarctic Oceans. SRC Tech. Rept. SRC20030718, 43pp.
16. Daniel J.F. The Elasmobranch Fishes (1922), University of California Press, Berkeley, California
17. Delarbre C., Spruyt N., Delmarre C., Gallut C., Barriel V., Janvier P., Laudet V., and Gachelin G. The complete nucleotide sequence of the mitochondrial DNA of the dogfish, Scyliorhinus canicula. Genetics 150 1 (1998) 331-344
18. Garman, S., 1913. The Plagiostomia (Sharks, Skates and Rays). Memoirs of the Museum of Comparative Zoology at Harvard College, vol. XXXVI (1st Reprint 1997). Benthic Press, Los Angeles, California, lxxiii+515pp.
19. Hall T. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
20. Harley E.H. DAPSA. A program for DNA and protein sequence alignment (2003), Department of Chemical Pathology, University of Cape Town, Cape Town, South Africa
21. Huelsenbeck J.P., Larget B., Miller R.E., and Ronquist F. Potential applications and pitfalls of bayesian inference of phylogeny. Syst. Biol. 51 5 (2002) 673-688
22. Huelsenbeck, J.P. and Ronquist, F., in Press. Mr. Bayes: Bayesian inference of phylogeny. Biometrics.
23. Human, B.A., 2003. Taxonomy and Molecular Phylogeny of some Southern African Catsharks (Scyliorhinidae; Chondrichthyes). Ph.D. Thesis. Department of Clinical Sciences, University of Cape Town. Cape Town, South Africa. xii, 257pp + appendices.
24. Kitamura T., Takemura A., Watabe S., Taniuchi T., and Shimizu M. Molecular phylogeny of the sharks and rays of superorder Squalea based on mitochondrial cytochrome b gene. Fish. Sci. 62 3 (1996) 340-343
25. Kocher T.D., Conroy J.A., McKaye K.R., Stauffer J.R., and Lockwood S.F. Evolution of NADH dehydrogenase subunit 2 in east African cichlid fish. Mol. Phyl. Evol. 4 4 (1995) 420-432
26. Lewis P.O. Phylogenetic systematics turns over a new leaf. TREE 16 1 (2001) 30-37
27. Martin A.P. Mitochondrial DNA sequence evolution in sharks: rates, patterns, and phylogenetic inferences. Mol. Biol. Evol. 12 6 (1995) 1114-1123
28. Martin A.P., and Naylor G.J.P. Independent origins of filter-feeding in megamouth and basking sharks (Order Lamniformes) inferred from phylogenetic analysis of cytochrome b gene sequences. In: Yano K., Morrissey J.F., Yabumoto Y., and Nakaya K. (Eds). Biology of the Megamouth Shark (1997), Tokai University Press, Tokyo 39-50
29. Martin A.P., Naylor G.J.P., and Palumbi S.R. Rates of mitochondrial DNA evolution in sharks are slow compared with mammals. Nature 357 (1992) 153-155
30. McCarthy, C., 1997. Chromas. School of Biomolecular and Biomedical Science, Faculty of Science and Technology, Griffith University, Brisbane. .
31. Müller, J., Henle, J., 1838-1841. Systematische Beschreibung der Plagiostomen. Verlag von Veitund Comp., Berlin. xxii + 1-28 (1838), 27-28 (reset) and 29-102 (1839), 103-204 (1841).
32. Naylor G.J.P., Martin A.P., Mattison E.G., and Brown W.M. Interrelationships of lamniform sharks: Testing phylogenetic hypotheses with sequence data. In: Kocher T.D., and Stepien C. (Eds). Molecular Systematics of Fishes (1997), Academic Press, New York 199-218
33. Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L., Grabowski, G., 1991. The Simple Fool's Guide to PCR, version 2.0. Department of Zoology and Kewalo Marine Laboratory, University of Hawaii, 44pp.
34. Rasmussen A.S., and Arnason U. Phylogenetic studies of complete mitochondrial DNA molecules place cartilaginous fishes within the tree of bony fishes. J. Mol. Evol. 48 (1999) 118-123
35. Rasmussen A.S., and Arnason U. Molecular studies suggest that cartilaginous fishes have a terminal position in the piscine tree. Proc. Natl. Acad. Sci. USA 96 (1999) 2177-2182
36. Strimmer K., and von Haeseler A. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13 7 (1996) 964-969
37. Swofford, D.L., 2002. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). Sinauer Associates, Sunderland, Massachusetts, version 4.
38. Taylor, L.R., 1972. A revision of the shark family Heterodontidae (Heterodontiformes, Selachii). Ph.D. Thesis, Department of Zoology, University of California, San Diego, USA, xiii+176pp.