메뉴 건너뛰기




Volumn 22, Issue 7, 2005, Pages 1593-1608

A secondary structural model of the 28S rRNA expansion segments D2 and D3 for chalcidoid wasps (Hymenoptera: Chalcidoidea)

Author keywords

28S; Chalcidoid; Expansion segment; Homology; Multiple sequence alignment; Ribosome; rRNA; Secondary structure

Indexed keywords

RNA 28S;

EID: 20444379556     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msi152     Document Type: Article
Times cited : (112)

References (153)
  • 1
    • 0033825449 scopus 로고    scopus 로고
    • Molecular markers distinguishing Encarsia formosa and Encarsia luteola (Hymenoptera: Aphelinidae)
    • Babcock, C. S., and J. M. Heraty. 2000. Molecular markers distinguishing Encarsia formosa and Encarsia luteola (Hymenoptera: Aphelinidae). Ann. Entomol. Soc. Am. 93: 738-744.
    • (2000) Ann. Entomol. Soc. Am. , vol.93 , pp. 738-744
    • Babcock, C.S.1    Heraty, J.M.2
  • 2
    • 0034771676 scopus 로고    scopus 로고
    • Preliminary phylogeny of Encarsia Förster (Hymenoptera: Aphelinidae) based on morphology and 28S rDNA
    • Babcock, C. S., J. M. Heraty, P. J. De Barro, F. Driver, and S. Schmidt. 2001. Preliminary phylogeny of Encarsia Förster (Hymenoptera: Aphelinidae) based on morphology and 28S rDNA. Mol. Phylogenet. Evol. 18:306-323.
    • (2001) Mol. Phylogenet. Evol. , vol.18 , pp. 306-323
    • Babcock, C.S.1    Heraty, J.M.2    De Barro, P.J.3    Driver, F.4    Schmidt, S.5
  • 3
    • 0036397286 scopus 로고    scopus 로고
    • Characterization of mitochondrial ribosomal RNA genes in gadiformes: Sequence variations, secondary structural features, and phylogenetic implications
    • Bakke, I., and S. Johansen. 2002. Characterization of mitochondrial ribosomal RNA genes in gadiformes: sequence variations, secondary structural features, and phylogenetic implications. Mol. Phylogenet. Evol. 25:87-100.
    • (2002) Mol. Phylogenet. Evol. , vol.25 , pp. 87-100
    • Bakke, I.1    Johansen, S.2
  • 4
    • 0001004849 scopus 로고    scopus 로고
    • A phylogenetic reconstruction of the Ichneumonoidea (Hymenoptera) based on the D2 variable region of 28S ribosomal RNA
    • Belshaw, R., M. Fitton, E. Herniou, C. Gimeno, and D. L. J. Quicke. 1998. A phylogenetic reconstruction of the Ichneumonoidea (Hymenoptera) based on the D2 variable region of 28S ribosomal RNA. Syst. Entomol. 23:109-123.
    • (1998) Syst. Entomol. , vol.23 , pp. 109-123
    • Belshaw, R.1    Fitton, M.2    Herniou, E.3    Gimeno, C.4    Quicke, D.L.J.5
  • 5
    • 0034906602 scopus 로고    scopus 로고
    • Paraphyletic taxa and taxonomic chaining: Evaluating the classification of braconine wasps (Hymenoptera: Braconidae) using 28S D2-3 rDNA sequences and morphological characters
    • Belshaw, R., C. Lopez-Vaamonde, N. Degerli, and D. L. J. Quicke. 2001. Paraphyletic taxa and taxonomic chaining: evaluating the classification of braconine wasps (Hymenoptera: Braconidae) using 28S D2-3 rDNA sequences and morphological characters. Biol. J. Linn. Soc. 73:411-424.
    • (2001) Biol. J. Linn. Soc. , vol.73 , pp. 411-424
    • Belshaw, R.1    Lopez-Vaamonde, C.2    Degerli, N.3    Quicke, D.L.J.4
  • 6
    • 0031160057 scopus 로고    scopus 로고
    • A molecular phylogeny of the Aphidiinae (Hymenoptera: Braconidae)
    • Belshaw, R., and D. L. J. Quicke. 1997. A molecular phylogeny of the Aphidiinae (Hymenoptera: Braconidae). Mol. Phylogenet. Evol. 7:281-293.
    • (1997) Mol. Phylogenet. Evol. , vol.7 , pp. 281-293
    • Belshaw, R.1    Quicke, D.L.J.2
  • 7
    • 0036592401 scopus 로고    scopus 로고
    • Robustness of ancestral state estimates: Evolution of life history strategy in ichneumonoid parasitoids
    • -. 2002. Robustness of ancestral state estimates: evolution of life history strategy in ichneumonoid parasitoids. Syst. Biol. 51:450-477.
    • (2002) Syst. Biol. , vol.51 , pp. 450-477
  • 8
    • 0033805074 scopus 로고    scopus 로고
    • Cirripede phylogeny using a novel approach: Molecular morphometrics
    • Billboud, B., M.-A. Geurrucci, M. Masselot, and B. Misof. 2000. Cirripede phylogeny using a novel approach: molecular morphometrics. Mol. Biol. Evol. 17:1435-1445.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 1435-1445
    • Billboud, B.1    Geurrucci, M.-A.2    Masselot, M.3    Misof, B.4
  • 9
    • 0005595098 scopus 로고
    • The application of nucleotide sequence data to phylogeny of the Hymenoptera: A review
    • Cameron, S. A., J. N. Derr, A. D. Austin, J. B. Woolley, and R. A. Wharton. 1992. The application of nucleotide sequence data to phylogeny of the Hymenoptera: a review. J. Hym. Res. 1:63-79.
    • (1992) J. Hym. Res. , vol.1 , pp. 63-79
    • Cameron, S.A.1    Derr, J.N.2    Austin, A.D.3    Woolley, J.B.4    Wharton, R.A.5
  • 11
    • 0027145271 scopus 로고
    • Phylogeny of the Nasonia species complex (Hymenoptera: Pteromalidae) inferred from an internal transcribed spacer (ITS2) and 28S rDNA sequences
    • Campbell, B. C., J. D. Steffen-Campbell, and J. H. Werren. 1993. Phylogeny of the Nasonia species complex (Hymenoptera: Pteromalidae) inferred from an internal transcribed spacer (ITS2) and 28S rDNA sequences. Insect Mol. Biol. 2:225-237.
    • (1993) Insect Mol. Biol. , vol.2 , pp. 225-237
    • Campbell, B.C.1    Steffen-Campbell, J.D.2    Werren, J.H.3
  • 12
    • 2942571539 scopus 로고    scopus 로고
    • The comparative RNA Web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
    • Cannone, J. J., S. Subramanian, M. N. Schnare et al. (14 coauthors). 2002. The comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3:2
    • (2002) BMC Bioinformatics , vol.3 , pp. 2
    • Cannone, J.J.1    Subramanian, S.2    Schnare, M.N.3
  • 13
    • 1642372749 scopus 로고    scopus 로고
    • Erratum
    • [Erratum in BMC Bioinformatics 2002 3:15.]
    • (2002) BMC Bioinformatics , vol.3 , pp. 15
  • 14
    • 0021759601 scopus 로고
    • Xenopus laevis 28S ribosomal RNA: A secondary structural model and its evolutionary and functional implications
    • Clark, C. G., B. W. Tague, V. C. Ware, and S. A. Gerbi. 1984. Xenopus laevis 28S ribosomal RNA: a secondary structural model and its evolutionary and functional implications. Nucleic Acids Res. 12:6197-6220.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 6197-6220
    • Clark, C.G.1    Tague, B.W.2    Ware, V.C.3    Gerbi, S.A.4
  • 15
    • 0033814944 scopus 로고    scopus 로고
    • Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP
    • Collins, L. J., V. Moulton, and D. Penny. 2000. Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP. J. Mol. Evol. 51:194-204.
    • (2000) J. Mol. Evol. , vol.51 , pp. 194-204
    • Collins, L.J.1    Moulton, V.2    Penny, D.3
  • 16
    • 0033944805 scopus 로고    scopus 로고
    • Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array
    • Cunningham, C. O., H. Aliesky, and C. M. Collins. 2000. Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array. J. Parasitol. 86:567-576.
    • (2000) J. Parasitol. , vol.86 , pp. 567-576
    • Cunningham, C.O.1    Aliesky, H.2    Collins, C.M.3
  • 17
    • 0033745569 scopus 로고    scopus 로고
    • Descriptions of three species of Eretmocerus Haldeman (Hymenoptera: Aphelinidae) parasitising Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) and Trialeurodes vaporariorum (Westwood) (Hemiptera: Aleyrodidae) in Australia based on morphological and molecular data
    • De Barro, P. J., F. Driver, I. D. Naumann, S. Schmidt, G. M. Clarke, and J. Curran. 2000. Descriptions of three species of Eretmocerus Haldeman (Hymenoptera: Aphelinidae) parasitising Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) and Trialeurodes vaporariorum (Westwood) (Hemiptera: Aleyrodidae) in Australia based on morphological and molecular data. Aust. J. Entomol. 39:259-269.
    • (2000) Aust. J. Entomol. , vol.39 , pp. 259-269
    • De Barro, P.J.1    Driver, F.2    Naumann, I.D.3    Schmidt, S.4    Clarke, G.M.5    Curran, J.6
  • 20
    • 0026870188 scopus 로고
    • Variation and the phylogenetic utility of the large ribosomal subunit of mitochondrial DNA from the insect order Hymenoptera
    • Derr, J. N., S. K. Davis, J. B. Woolley, and R. A. Wharton. 1992a. Variation and the phylogenetic utility of the large ribosomal subunit of mitochondrial DNA from the insect order Hymenoptera. Mol. Phylogenet. Evol. 1:136-147.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 136-147
    • Derr, J.N.1    Davis, S.K.2    Woolley, J.B.3    Wharton, R.A.4
  • 21
    • 0026958858 scopus 로고
    • Reassessment of the 16S rRNA nucleotide sequence from members of the parasitic Hymenoptera
    • -. 1992b. Reassessment of the 16S rRNA nucleotide sequence from members of the parasitic Hymenoptera. Mol. Phylogenet. Evol. 1:338-341.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 338-341
  • 22
    • 0027500136 scopus 로고
    • Ribosomal secondary structure: Compensatory mutations and implications for phylogenetic analysis
    • Dixon, M. T., and D. M. Hillis. 1993. Ribosomal secondary structure: compensatory mutations and implications for phylogenetic analysis. Mol. Biol. Evol. 10:256-267.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 256-267
    • Dixon, M.T.1    Hillis, D.M.2
  • 24
    • 0028793178 scopus 로고
    • Molecular evolution of the mitochondrial 12S rRNA in Ungulata (Mammalia)
    • Douzery, E., and F. M. Catzeflis. 1995. Molecular evolution of the mitochondrial 12S rRNA in Ungulata (Mammalia). J. Mol. Evol. 41:622-636.
    • (1995) J. Mol. Evol. , vol.41 , pp. 622-636
    • Douzery, E.1    Catzeflis, F.M.2
  • 25
    • 0027941868 scopus 로고
    • Molecular phylogeny of the insect order Hymenoptera: Apocritan relationships
    • Dowton, M., and A. D. Austin. 1994. Molecular phylogeny of the insect order Hymenoptera: Apocritan relationships. Proc. Natl. Acad. Sci. USA 91:9911-9915.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 9911-9915
    • Dowton, M.1    Austin, A.D.2
  • 26
    • 0029619002 scopus 로고
    • Increased genetic diversity in mitochondrial genes is correlated with the evolution of parasitism in the Hymenoptera
    • -. 1995. Increased genetic diversity in mitochondrial genes is correlated with the evolution of parasitism in the Hymenoptera. J. Mol. Evol. 41:958-965.
    • (1995) J. Mol. Evol. , vol.41 , pp. 958-965
  • 27
    • 0030981801 scopus 로고    scopus 로고
    • Evidence for AT-transversion bias in wasp (Hymenoptera: Symphyta) mitochondrial genes and its implications for the origin of parasitism
    • -. 1997. Evidence for AT-transversion bias in wasp (Hymenoptera: Symphyta) mitochondrial genes and its implications for the origin of parasitism. J. Mol. Evol. 44:398-405.
    • (1997) J. Mol. Evol. , vol.44 , pp. 398-405
  • 28
    • 0032233674 scopus 로고    scopus 로고
    • Phylogenetic relationships among the microgastroid wasps (Hymenoptera: Braconidae): Combined analysis of 16S and 28S rDNA genes and morphological data
    • -. 1998. Phylogenetic relationships among the microgastroid wasps (Hymenoptera: Braconidae): combined analysis of 16S and 28S rDNA genes and morphological data. Mol. Phylogenet. Evol. 10:354-366.
    • (1998) Mol. Phylogenet. Evol. , vol.10 , pp. 354-366
  • 29
    • 0034814630 scopus 로고    scopus 로고
    • Simultaneous analysis of 16S, 28S, COI and morphology in the Hymenoptera: Apocrita: Evolutionary transitions among parasitic wasps
    • . 2001. Simultaneous analysis of 16S, 28S, COI and morphology in the Hymenoptera: Apocrita: evolutionary transitions among parasitic wasps. Biol. J. Linn. Soc. 74:87-111.
    • (2001) Biol. J. Linn. Soc. , vol.74 , pp. 87-111
  • 30
    • 0032079589 scopus 로고    scopus 로고
    • Evolutionary relationships among the Braconidae (Hymenoptera: Ichneumonoidea) inferred from partial 16S rDNA gene sequences
    • Dowton, M., A. D. Austin, and M. F. Antolin. 1998. Evolutionary relationships among the Braconidae (Hymenoptera: Ichneumonoidea) inferred from partial 16S rDNA gene sequences. Insect Mol. Biol. 7:129-150.
    • (1998) Insect Mol. Biol. , vol.7 , pp. 129-150
    • Dowton, M.1    Austin, A.D.2    Antolin, M.F.3
  • 31
    • 0036144965 scopus 로고    scopus 로고
    • Simultaneous molecular and morphological analysis of braconid relationships (Insecta: Hymenoptera: Braconidae) indicates independent mt-tRNA gene inversions within a single wasp family
    • Dowton, M., R. Belshaw, A. D. Austin, and D. L. J. Quicke. 2002. Simultaneous molecular and morphological analysis of braconid relationships (Insecta: Hymenoptera: Braconidae) indicates independent mt-tRNA gene inversions within a single wasp family. J. Mol. Evol. 54:210-226.
    • (2002) J. Mol. Evol. , vol.54 , pp. 210-226
    • Dowton, M.1    Belshaw, R.2    Austin, A.D.3    Quicke, D.L.J.4
  • 32
    • 0035919726 scopus 로고    scopus 로고
    • AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16S and 23S rRNA helices
    • Elgavish, T., J. J. Cannone, J. C. Lee, S. C. Harvey, and R. R. Gutell. 2001. AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16S and 23S rRNA helices. J. Mol. Biol. 310:735-753.
    • (2001) J. Mol. Biol. , vol.310 , pp. 735-753
    • Elgavish, T.1    Cannone, J.J.2    Lee, J.C.3    Harvey, S.C.4    Gutell, R.R.5
  • 34
    • 0028093707 scopus 로고
    • Rate limits for pairing and compensatory change: The mitochondrial ribosomal DNA of antelopes
    • Gatesy, J., C. Hayashi, R. DeSalle, and E. Vrba. 1994. Rate limits for pairing and compensatory change: the mitochondrial ribosomal DNA of antelopes. Evolution 48:188-196.
    • (1994) Evolution , vol.48 , pp. 188-196
    • Gatesy, J.1    Hayashi, C.2    DeSalle, R.3    Vrba, E.4
  • 35
    • 0033782253 scopus 로고    scopus 로고
    • Phylogeny of Eulophidae (Hymenoptera: Chalcidoidea), with a reclassification of Eulophinae and the recognition that Elasmidae are derived eulophids
    • Gauthier, N., J. La Salle, D. L. J. Quicke, and H. C. J. Godfray. 2000. Phylogeny of Eulophidae (Hymenoptera: Chalcidoidea), with a reclassification of Eulophinae and the recognition that Elasmidae are derived eulophids. Syst. Entomol. 25: 521-539.
    • (2000) Syst. Entomol. , vol.25 , pp. 521-539
    • Gauthier, N.1    La Salle, J.2    Quicke, D.L.J.3    Godfray, H.C.J.4
  • 37
    • 84974268326 scopus 로고
    • Evidence for monophyly and relationships of Chalcidoidea, Mymaridae, and Mymarommatidae (Hymenoptera: Terebrantese)
    • Gibson, G. A. P. 1986. Evidence for monophyly and relationships of Chalcidoidea, Mymaridae, and Mymarommatidae (Hymenoptera: Terebrantese). Can. Entomol. 118:205-240.
    • (1986) Can. Entomol. , vol.118 , pp. 205-240
    • Gibson, G.A.P.1
  • 38
    • 0346606252 scopus 로고
    • A word on chalcidoid classification
    • -. 1990. A word on chalcidoid classification. Chalcid Forum (News1.) 13:7-9.
    • (1990) Chalcid Forum (News1.) , vol.13 , pp. 7-9
  • 39
    • 0001835206 scopus 로고    scopus 로고
    • Phylogenetics and classification of Chalcidoidea and Mymarommatoidea: A review of current concepts (Hymenoptera, Apocrita)
    • Gibson, G. A., J. M. Heraty, and J. B. Woolley. 1999. Phylogenetics and classification of Chalcidoidea and Mymarommatoidea: a review of current concepts (Hymenoptera, Apocrita). Zool. Scr. 28:87-124.
    • (1999) Zool. Scr. , vol.28 , pp. 87-124
    • Gibson, G.A.1    Heraty, J.M.2    Woolley, J.B.3
  • 40
    • 7444256051 scopus 로고    scopus 로고
    • Characterizing regions of ambiguous alignment caused by the expansion and contraction of hairpin-stem loops in ribosomal RNA molecules
    • Gillespie, J. J. 2004. Characterizing regions of ambiguous alignment caused by the expansion and contraction of hairpin-stem loops in ribosomal RNA molecules. Mol. Phylogenet. Evol. 33:936-943.
    • (2004) Mol. Phylogenet. Evol. , vol.33 , pp. 936-943
    • Gillespie, J.J.1
  • 41
    • 5044230709 scopus 로고    scopus 로고
    • A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera, Chrysomelidae; Galerucinae)
    • Gillespie, J. J., J. J. Cannone, R. R. Gutell, and A. I. Cognato. 2004b. A secondary structural model of the 28S rRNA expansion segments D2 and D3 from rootworms and related leaf beetles (Coleoptera. Chrysomelidae; Galerucinae). Insect Mol. Biol. 13:495-518.
    • (2004) Insect Mol. Biol. , vol.13 , pp. 495-518
    • Gillespie, J.J.1    Cannone, J.J.2    Gutell, R.R.3    Cognato, A.I.4
  • 42
    • 0345393170 scopus 로고    scopus 로고
    • Convergent evolution of cucurbitacin feeding in spatially isolated rootworm taxa (Coleoptera: Chrysomelidae: Galerucinae, Luperini)
    • Gillespie, J. J., K. M. Kjer, C. N. Duckett, and D. W. Tallamy. 2003. Convergent evolution of cucurbitacin feeding in spatially isolated rootworm taxa (Coleoptera: Chrysomelidae: Galerucinae, Luperini). Mol. Phylogenet. Evol. 29:161-175.
    • (2003) Mol. Phylogenet. Evol. , vol.29 , pp. 161-175
    • Gillespie, J.J.1    Kjer, K.M.2    Duckett, C.N.3    Tallamy, D.W.4
  • 43
    • 5044222166 scopus 로고    scopus 로고
    • The evolution of cucurbitacin pharmacophagy in rootworms: Insight from Luperini paraphyly
    • P. H. Jolivet, J. A. Santiago-Blay, and M. Schmitt, eds. Kluwer Academic Publishers, Boston
    • Gillespie, J. J., K. M. Kjer, E. R. Riley, and D. W. Tallamy. 2004a. The evolution of cucurbitacin pharmacophagy in rootworms: insight from Luperini paraphyly. Pp. 37-58 in P. H. Jolivet, J. A. Santiago-Blay, and M. Schmitt, eds. New contributions to the biology of Chrysomelidae. Kluwer Academic Publishers, Boston.
    • (2004) New Contributions to the Biology of Chrysomelidae , pp. 37-58
    • Gillespie, J.J.1    Kjer, K.M.2    Riley, E.R.3    Tallamy, D.W.4
  • 44
    • 20444416487 scopus 로고    scopus 로고
    • Predicted secondary structures for expansion segments D2-D10 of the 28S large subunit ribosomal RNA from ichneumonoid Hymenoptera: Homology assignment and phylogenetic implications
    • in press
    • Gillespie, J. J., M. J. Yoder, and R. A. Wharton. 2005. Predicted secondary structures for expansion segments D2-D10 of the 28S large subunit ribosomal RNA from ichneumonoid Hymenoptera: homology assignment and phylogenetic implications. J. Mol. Evol. (in press).
    • (2005) J. Mol. Evol.
    • Gillespie, J.J.1    Yoder, M.J.2    Wharton, R.A.3
  • 45
    • 0030610086 scopus 로고    scopus 로고
    • Phylogenetic relationships of the Alysiinae/Opiinae (Hymenoptera: Braconidae) and the utility of cytochrome b, 16S and 28S D2 rRNA
    • Gimeno, C., R. Belshaw, and D. L. J. Quicke. 1997. Phylogenetic relationships of the Alysiinae/Opiinae (Hymenoptera: Braconidae) and the utility of cytochrome b, 16S and 28S D2 rRNA. Insect Mol. Biol. 6:273-284.
    • (1997) Insect Mol. Biol. , vol.6 , pp. 273-284
    • Gimeno, C.1    Belshaw, R.2    Quicke, D.L.J.3
  • 46
    • 20444413527 scopus 로고    scopus 로고
    • POY: The optimization of alignment characters
    • ftp.amnh.org/pub/molecular
    • Gladstein, D.S., and W. C. Wheeler. 1997. POY: the optimization of alignment characters. Program and documentation. (ftp.amnh.org/pub/molecular).
    • (1997) Program and Documentation
    • Gladstein, D.S.1    Wheeler, W.C.2
  • 47
    • 0041491214 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pleurotus species according to the sequence and secondary structure of the mitochondrial small-subunit rRNA V4, V6, and V9 domains
    • Gonzalez, P., and J. Labarere. 2000. Phylogenetic relationships of Pleurotus species according to the sequence and secondary structure of the mitochondrial small-subunit rRNA V4, V6, and V9 domains. Microbiology 146:209-221.
    • (2000) Microbiology , vol.146 , pp. 209-221
    • Gonzalez, P.1    Labarere, J.2
  • 48
    • 0002426311 scopus 로고
    • Parasitoids in classical biological control
    • J. K. Waage and D. J. Greathead, eds. Academic Press, London
    • Greathead, D. J. 1986. Parasitoids in classical biological control. Pp. 287-318 in J. K. Waage and D. J. Greathead, eds. Insect parasitoids. Academic Press, London.
    • (1986) Insect Parasitoids , pp. 287-318
    • Greathead, D.J.1
  • 50
    • 0002542661 scopus 로고
    • Evolutionary characteristics of 16S and 23S rRNA structures
    • H. Hartman and K. Matsuno, eds. World Scientific Publishing Co., Hackensack N.J.
    • Gutell, R. R. 1992. Evolutionary characteristics of 16S and 23S rRNA structures. Pp. 243-309 in H. Hartman and K. Matsuno, eds. The origin and evolution of prokaryotic and eukaryotic cells. World Scientific Publishing Co., Hackensack N.J.
    • (1992) The Origin and Evolution of Prokaryotic and Eukaryotic Cells , pp. 243-309
    • Gutell, R.R.1
  • 52
    • 0023742397 scopus 로고
    • A compilation of large subunit RNA sequences presented in a structural format
    • Gutell, R. R., and G. E. Fox. 1988. A compilation of large subunit RNA sequences presented in a structural format. Nucleic Acids Res. 16S:r175-r269.
    • (1988) Nucleic Acids Res. , vol.16 S
    • Gutell, R.R.1    Fox, G.E.2
  • 53
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures
    • Gutell, R. R., M. W. Gray, and M. N. Schnare. 1993. A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures. Nucleic Acids Res. 21S:3055-3074.
    • (1993) Nucleic Acids Res. , vol.21 S , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 54
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell, R. R., N. Larsen, and C. R. Woese. 1994. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 58:10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 55
    • 0026466830 scopus 로고
    • Identifying constraints on the higher-order structure of RNA: Continued development and application of comparative sequence analysis methods
    • Gutell, R. R., A. Power, G. Hertz, E. Putz, and G. Stormo. 1992. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Res. 20: 5785-5795.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5785-5795
    • Gutell, R.R.1    Power, A.2    Hertz, G.3    Putz, E.4    Stormo, G.5
  • 56
    • 0025330281 scopus 로고
    • A compilation of large subunit (23S-like) ribosomal RNA sequences presented in a secondary structure format
    • Gutell, R. R., M. N. Schnare, and M. W. Gray. 1990. A compilation of large subunit (23S-like) ribosomal RNA sequences presented in a secondary structure format. Nucleic Acids Res. 188:2319-2330.
    • (1990) Nucleic Acids Res. , vol.188 , pp. 2319-2330
    • Gutell, R.R.1    Schnare, M.N.2    Gray, M.W.3
  • 57
    • 0026539417 scopus 로고
    • A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures
    • Gutell R. R., M. N. Schnare, and M. W. Gray 1992. A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures. Nucleic Acids Res. 208:2095-2109.
    • (1992) Nucleic Acids Res. , vol.208 , pp. 2095-2109
    • Gutell, R.R.1    Schnare, M.N.2    Gray, M.W.3
  • 60
    • 0024043879 scopus 로고
    • Molecular coevolution among cryptically simple expansion segments of eukaryotic 26S/28S rRNAs
    • Hancock, J. M., and G. A. Dover. 1988. Molecular coevolution among cryptically simple expansion segments of eukaryotic 26S/28S rRNAs. Mol. Biol. Evol. 5:377-392.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 377-392
    • Hancock, J.M.1    Dover, G.A.2
  • 61
    • 0024039669 scopus 로고
    • Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster
    • Hancock, J. M., D. Tautz, and G. A. Dover. 1988. Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster. Mol. Biol. Evol. 5:393-414.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 393-414
    • Hancock, J.M.1    Tautz, D.2    Dover, G.A.3
  • 62
    • 0034087551 scopus 로고    scopus 로고
    • How slippage-derived sequences are incorporated into rRNA variable-region secondary structure: Implications for phylogeny reconstruction
    • Hancock, J. M., and A. P. Vogler. 2000. How slippage-derived sequences are incorporated into rRNA variable-region secondary structure: implications for phylogeny reconstruction. Mol. Phylogenet. Evol. 14:366-374.
    • (2000) Mol. Phylogenet. Evol. , vol.14 , pp. 366-374
    • Hancock, J.M.1    Vogler, A.P.2
  • 63
    • 0030302918 scopus 로고    scopus 로고
    • Adaptive radiation in the Afrotropical region of the Palaeotropical genus Lissocephala (Drosophilidae) on the pantropical genus Ficus (Moraceae)
    • Harry, M., M. Solignac, and D. Lachaise. 1996. Adaptive radiation in the Afrotropical region of the Palaeotropical genus Lissocephala (Drosophilidae) on the pantropical genus Ficus (Moraceae). J. Biogeogr. 23:543-552.
    • (1996) J. Biogeogr. , vol.23 , pp. 543-552
    • Harry, M.1    Solignac, M.2    Lachaise, D.3
  • 64
    • 7044281409 scopus 로고    scopus 로고
    • Molecular systematics, Chalcidoidea and biological control
    • L. E. Ehler, R. Sforza, and T. Mateille, eds. CAB International, Wallingford, United Kingdom
    • Heraty, J. M. 2003. Molecular systematics, Chalcidoidea and biological control. Pp. 39-71 in L. E. Ehler, R. Sforza, and T. Mateille, eds. Genetics, evolution and biological control. CAB International, Wallingford, United Kingdom.
    • (2003) Genetics, Evolution and Biological Control , pp. 39-71
    • Heraty, J.M.1
  • 65
    • 20444364991 scopus 로고    scopus 로고
    • Biodiversity of Chalcidoidea of the El Eden ecological reserve in Quintana Roo, Mexico
    • A. Gómez-Pompa, M. F. Allen, S. L. Fedick, and J. J. Jiménez-Osornio, eds. Haworth Press, Binghamton, N.Y.
    • Heraty, J. M., and M. E. Gates. 2003. Biodiversity of Chalcidoidea of the El Eden ecological reserve in Quintana Roo, Mexico. Pp. 277-292 in A. Gómez-Pompa, M. F. Allen, S. L. Fedick, and J. J. Jiménez-Osornio, eds. Lowland Maya area: three millenia at the human-wildland interface. Haworth Press, Binghamton, N.Y.
    • (2003) Lowland Maya Area: Three Millenia at the Human-Wildland Interface , pp. 277-292
    • Heraty, J.M.1    Gates, M.E.2
  • 66
    • 0031743030 scopus 로고    scopus 로고
    • Hexamethyldisilazane: Chemical alternative for drying insects
    • Heraty, J. M., and D. Hawks. 1998. Hexamethyldisilazane: chemical alternative for drying insects. Entomol. News 109:369-374.
    • (1998) Entomol. News , vol.109 , pp. 369-374
    • Heraty, J.M.1    Hawks, D.2
  • 67
    • 7044249756 scopus 로고    scopus 로고
    • Phylogeny and behavior of the Gollumiellinae, a new subfamily of the ant parasitic Eucharitidae (Hymenoptera: Chalcidoidea)
    • Heraty, J. M., D. Hawks, J. S. Kostecki, and A. Carmichael. 2004. Phylogeny and behavior of the Gollumiellinae, a new subfamily of the ant parasitic Eucharitidae (Hymenoptera: Chalcidoidea). Syst. Entomol. 29:544-559.
    • (2004) Syst. Entomol. , vol.29 , pp. 544-559
    • Heraty, J.M.1    Hawks, D.2    Kostecki, J.S.3    Carmichael, A.4
  • 68
    • 0031821655 scopus 로고    scopus 로고
    • Mandibular teeth in Chalcidoidea: Function and phylogeny
    • Heraty, J. M., and M. E. Schauff. 1998. Mandibular teeth in Chalcidoidea: function and phylogeny. J. Nat. Hist. 32:1227-1244.
    • (1998) J. Nat. Hist. , vol.32 , pp. 1227-1244
    • Heraty, J.M.1    Schauff, M.E.2
  • 69
    • 0001943520 scopus 로고    scopus 로고
    • Phylogenetic implications of the mesofurca in Chalcidoidea (Hymenoptera), with emphasis on Aphelinidae
    • Heraty, J. M., J. B. Woolley, and D. C. Darling. 1997. Phylogenetic implications of the mesofurca in Chalcidoidea (Hymenoptera), with emphasis on Aphelinidae. Syst. Entomol. 22:45-65.
    • (1997) Syst. Entomol. , vol.22 , pp. 45-65
    • Heraty, J.M.1    Woolley, J.B.2    Darling, D.C.3
  • 70
    • 0030034071 scopus 로고    scopus 로고
    • Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA
    • Hickson, R. E., C. Simon, A. Cooper, G. S. Spicer, J. Sullivan, and D. Penny. 1996. Conserved sequence motifs, alignment, and secondary structure for the third domain of animal 12S rRNA. Mol. Biol. Evol. 13:150-169.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 150-169
    • Hickson, R.E.1    Simon, C.2    Cooper, A.3    Spicer, G.S.4    Sullivan, J.5    Penny, D.6
  • 71
    • 0026300584 scopus 로고
    • Ribosomal DNA: Molecular evolution and phylogenetic inference
    • Hillis, D. M., and M. T. Dixon. 1991. Ribosomal DNA: molecular evolution and phylogenetic inference. Q. Rev. Biol. 66: 411-453.
    • (1991) Q. Rev. Biol. , vol.66 , pp. 411-453
    • Hillis, D.M.1    Dixon, M.T.2
  • 73
    • 0021754238 scopus 로고
    • Probing the conformation of 26S rRNA in yeast 60S ribosomal subunits with kethoxal
    • Hogan, J. J., R. R. Gutell, and H. F. Noller. 1984. Probing the conformation of 26S rRNA in yeast 60S ribosomal subunits with kethoxal. Biochemistry 23:3330-3335.
    • (1984) Biochemistry , vol.23 , pp. 3330-3335
    • Hogan, J.J.1    Gutell, R.R.2    Noller, H.F.3
  • 74
    • 0141721420 scopus 로고    scopus 로고
    • RNA-based phylogenetic methods: Application to mammalian mitochondrial RNA sequences
    • Hudelot, C., V. Gowri-Shankar, H. Jow, M. Rattray, and P. G. Higgs. 2003. RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences. Mol. Phylogenet. Evol. 28:241-252.
    • (2003) Mol. Phylogenet. Evol. , vol.28 , pp. 241-252
    • Hudelot, C.1    Gowri-Shankar, V.2    Jow, H.3    Rattray, M.4    Higgs, P.G.5
  • 75
    • 0034113380 scopus 로고    scopus 로고
    • Secondary structure and phylogenetic implications of nuclear large subunit ribosomal RNA in the ectomycorrhizal fungus Tricholoma matsutake
    • Hwang, S. K., and J. G. Kim. 2000. Secondary structure and phylogenetic implications of nuclear large subunit ribosomal RNA in the ectomycorrhizal fungus Tricholoma matsutake. Curr. Microbiol. 40:250-256.
    • (2000) Curr. Microbiol. , vol.40 , pp. 250-256
    • Hwang, S.K.1    Kim, J.G.2
  • 76
    • 0032085606 scopus 로고    scopus 로고
    • Molecular phylogenetics at the Felsenstein zone: Approaching the Strepsiptera problem using 5.8S and 28S rDNA sequences
    • Hwang, U. I., W. Kim, D. Tautz, and M. Friedrich. 1998. Molecular phylogenetics at the Felsenstein zone: approaching the Strepsiptera problem using 5.8S and 28S rDNA sequences. Mol. Phylogenet. Evol. 9:470-480.
    • (1998) Mol. Phylogenet. Evol. , vol.9 , pp. 470-480
    • Hwang, U.I.1    Kim, W.2    Tautz, D.3    Friedrich, M.4
  • 77
    • 0036728808 scopus 로고    scopus 로고
    • Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution
    • Jow, H., C. Hudelot, R. M., and P. G. Higgs. 2002. Bayesian phylogenetics using an RNA substitution model applied to early mammalian evolution. Mol. Biol. Evol. 19:1591-1601.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 1591-1601
    • Jow, H.1    Hudelot, C.2    Higgs, P.G.3
  • 78
    • 0033782276 scopus 로고    scopus 로고
    • Phylogenetic relationships among genera of Aphidiinae (Hymenoptera: Braconidae) based on DNA sequence of the mitochondrial 16S rRNA gene
    • Kambhampati, S., W. Volkl, and M. Mackauer. 2000. Phylogenetic relationships among genera of Aphidiinae (Hymenoptera: Braconidae) based on DNA sequence of the mitochondrial 16S rRNA gene. Syst. Entomol. 25:437-445.
    • (2000) Syst. Entomol. , vol.25 , pp. 437-445
    • Kambhampati, S.1    Volkl, W.2    Mackauer, M.3
  • 80
    • 0029365329 scopus 로고
    • Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: An example of alignment and data presentation from the frogs
    • Kjer, K. M. 1995. Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs. Mol. Phylogenet. Evol. 4:314-330.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 314-330
    • Kjer, K.M.1
  • 81
    • 0031452231 scopus 로고    scopus 로고
    • An alignment template for amphibian 12S rRNA, domain III: Conserved primary and secondary structural motifs
    • -. 1997. An alignment template for amphibian 12S rRNA, domain III: conserved primary and secondary structural motifs. J. Herpetol. 31:599-604.
    • (1997) J. Herpetol. , vol.31 , pp. 599-604
  • 82
    • 3242721251 scopus 로고    scopus 로고
    • Aligned 18S and insect phylogeny
    • -. 2004. Aligned 18S and insect phylogeny. Syst. Biol. 53:506-514.
    • (2004) Syst. Biol. , vol.53 , pp. 506-514
  • 83
    • 0028345871 scopus 로고
    • Mosquito large subunit ribosomal RNA: Simultaneous alignment of primary and secondary structure
    • Kjer, K. M., G. D. Baldridge, and A. M. Fallon. 1994. Mosquito large subunit ribosomal RNA: simultaneous alignment of primary and secondary structure. Biochim. Biophys. Acta 1217:147-155.
    • (1994) Biochim. Biophys. Acta , vol.1217 , pp. 147-155
    • Kjer, K.M.1    Baldridge, G.D.2    Fallon, A.M.3
  • 84
    • 0035527388 scopus 로고    scopus 로고
    • Phylogeny of Trichoptera (Caddisflies): Characterization of signal and noise within multiple datasets
    • Kjer, K. M., R. J. Blahnik, and R. W. Holzenthal. 2001. Phylogeny of Trichoptera (Caddisflies): characterization of signal and noise within multiple datasets. Syst. Biol. 50:781-816.
    • (2001) Syst. Biol. , vol.50 , pp. 781-816
    • Kjer, K.M.1    Blahnik, R.J.2    Holzenthal, R.W.3
  • 85
    • 0026711012 scopus 로고
    • Mispairing and compensational changes during the evolution of mitochondrial ribosomal RNA
    • Kraus. F., L. Jarecki, M. Miyamoto, S. Tanhauser, and P. Laipis. 1992. Mispairing and compensational changes during the evolution of mitochondrial ribosomal RNA. Mol. Biol. Evol. 9:770-774.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 770-774
    • Kraus, F.1    Jarecki, L.2    Miyamoto, M.3    Tanhauser, S.4    Laipis, P.5
  • 86
    • 0000831631 scopus 로고
    • A molecular perspective on the evolutionary relationships of the salamander families
    • Larsen, A. 1991. A molecular perspective on the evolutionary relationships of the salamander families. Evol. Biol. 25: 211-277.
    • (1991) Evol. Biol. , vol.25 , pp. 211-277
    • Larsen, A.1
  • 87
    • 0002443376 scopus 로고
    • Parasitic Hymenoptera, biological control and the biodiversity crisis
    • J. La Salle, and I. D. Gauld, eds. C.A.B. International, Wallingford, United Kingdom
    • La Salle, J. 1993. Parasitic Hymenoptera, biological control and the biodiversity crisis. Pp. 197-216 in J. La Salle, and I. D. Gauld, eds. Hymenoptera and biodiversity. C.A.B. International, Wallingford, United Kingdom.
    • (1993) Hymenoptera and Biodiversity , pp. 197-216
    • La Salle, J.1
  • 88
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson, G., and G. A. Gutman. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:203-221.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 89
    • 0025753819 scopus 로고
    • Secondary structure constraints on the evolution of Drosophila 28S ribosomal RNA expansion segments
    • Linares, A. R., J. M. Hancock, and G. A. Dover. 1991. Secondary structure constraints on the evolution of Drosophila 28S ribosomal RNA expansion segments. J. Mol. Biol. 219:381-390.
    • (1991) J. Mol. Biol. , vol.219 , pp. 381-390
    • Linares, A.R.1    Hancock, J.M.2    Dover, G.A.3
  • 90
    • 0034770580 scopus 로고    scopus 로고
    • Molecular phylogenies of fig wasps: Partial cocladogenesis of pollinators and parasites
    • Lopez-Vaamonde, C., J. Y. Rasplus, G. D. Weiblen, and J. M. Cook. 2001. Molecular phylogenies of fig wasps: partial cocladogenesis of pollinators and parasites. Mol. Phylogenet. Evol. 21:55-71.
    • (2001) Mol. Phylogenet. Evol. , vol.21 , pp. 55-71
    • Lopez-Vaamonde, C.1    Rasplus, J.Y.2    Weiblen, G.D.3    Cook, J.M.4
  • 91
    • 0034351388 scopus 로고    scopus 로고
    • Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses using unequivocal coding and optimal character-state weighting
    • Lutzoni, F., P. Wagner, and V. Reeb. 2000. Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses using unequivocal coding and optimal character-state weighting. Syst. Biol. 49:628-651.
    • (2000) Syst. Biol. , vol.49 , pp. 628-651
    • Lutzoni, F.1    Wagner, P.2    Reeb, V.3
  • 92
    • 0034025097 scopus 로고    scopus 로고
    • Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures
    • Lydeard, C., W. E. Holznagel, M. N. Schnare, and R. R. Gutell. 2000. Phylogenetic analysis of molluscan mitochondrial LSU rDNA sequences and secondary structures. Mol. Phylogenet. Evol. 15:83-102.
    • (2000) Mol. Phylogenet. Evol. , vol.15 , pp. 83-102
    • Lydeard, C.1    Holznagel, W.E.2    Schnare, M.N.3    Gutell, R.R.4
  • 93
    • 0036005641 scopus 로고    scopus 로고
    • Morphometric and molecular analysis of the Encarsia inaron species-group (Hymenoptera: Aphelinidae), parasitoids of whiteflies (Hemiptera: Aleyrodidae)
    • Manzari, S., A. Polaszek, R. Belshaw, and D. L. J. Quicke. 2002. Morphometric and molecular analysis of the Encarsia inaron species-group (Hymenoptera: Aphelinidae), parasitoids of whiteflies (Hemiptera: Aleyrodidae). Bull. Entomol. Res. 92:165-175.
    • (2002) Bull. Entomol. Res. , vol.92 , pp. 165-175
    • Manzari, S.1    Polaszek, A.2    Belshaw, R.3    Quicke, D.L.J.4
  • 94
    • 0033174960 scopus 로고    scopus 로고
    • Phylogenetic signal in the COI, 16S, and 28S genes for inferring relationships among genera of Microgastrinae (Hymenoptera; Braconidae): Evidence of a high diversification rate in this group of parasitoids
    • Mardulyn, P., and J. B. Whitfield. 1999. Phylogenetic signal in the COI, 16S, and 28S genes for inferring relationships among genera of Microgastrinae (Hymenoptera; Braconidae): evidence of a high diversification rate in this group of parasitoids. Mol. Phylogenet. Evol. 12:282-294.
    • (1999) Mol. Phylogenet. Evol. , vol.12 , pp. 282-294
    • Mardulyn, P.1    Whitfield, J.B.2
  • 95
    • 0026581378 scopus 로고
    • Substitution biases, weighted parsimony, and amniote phylogeny as inferred from 18S-ribosomal-RNA sequences
    • Marshall, C. R. 1992. Substitution biases, weighted parsimony, and amniote phylogeny as inferred from 18S-ribosomal-RNA sequences. Mol. Biol. Evol. 9:370-373.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 370-373
    • Marshall, C.R.1
  • 96
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D. H., J. Sabina, M. Zuker, and D. H. Turner. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288:911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 97
    • 0023071729 scopus 로고
    • Comparisons of large subunit rRNAs reveal some eukaryote-specific elements of secondary structure
    • Michot, B., and J.-P. Bachellerie. 1987. Comparisons of large subunit rRNAs reveal some eukaryote-specific elements of secondary structure. Biochimie 69:11-23.
    • (1987) Biochimie , vol.69 , pp. 11-23
    • Michot, B.1    Bachellerie, J.-P.2
  • 98
    • 0021770563 scopus 로고
    • Secondary structure of mouse 28S rRNA and general model for the folding of the large rRNA in eukaryotes
    • Michot, B., N. Hassouna, and J.-P. Bachellerie. 1984. Secondary structure of mouse 28S rRNA and general model for the folding of the large rRNA in eukaryotes. Nucleic Acids Res. 12:4259-4279.
    • (1984) Nucleic Acids Res. , vol.12 , pp. 4259-4279
    • Michot, B.1    Hassouna, N.2    Bachellerie, J.-P.3
  • 99
    • 0025232746 scopus 로고
    • Evolution of large-subunit rRNA structure. The diversification of divergent D3 domain among major phylogenetic groups
    • Michot, B., L. H. Qu, and J. P. Bachellerie. 1990. Evolution of large-subunit rRNA structure. The diversification of divergent D3 domain among major phylogenetic groups. Eur. J. Biochem. 188:219-229.
    • (1990) Eur. J. Biochem. , vol.188 , pp. 219-229
    • Michot, B.1    Qu, L.H.2    Bachellerie, J.P.3
  • 100
    • 0344664006 scopus 로고    scopus 로고
    • Comparative analysis of mt LSU rRNA secondary structures of odonates: Structural variability and phylogenetic signal
    • Misof, B., and G. Fleck. 2003. Comparative analysis of mt LSU rRNA secondary structures of odonates: structural variability and phylogenetic signal. Insect Mol. Biol. 12:535-547.
    • (2003) Insect Mol. Biol. , vol.12 , pp. 535-547
    • Misof, B.1    Fleck, G.2
  • 101
    • 0031431594 scopus 로고    scopus 로고
    • A new species of Dicopomorpha (Hymenoptera: Mymaridae) with diminuative, apterous males
    • Mockford, E. L. 1997. A new species of Dicopomorpha (Hymenoptera: Mymaridae) with diminuative, apterous males. Ann. Entomol. Soc. Am. 90:115-120.
    • (1997) Ann. Entomol. Soc. Am. , vol.90 , pp. 115-120
    • Mockford, E.L.1
  • 102
    • 0034103919 scopus 로고    scopus 로고
    • Long branch attraction effects and the status of "basal eukaryotes:" phytogeny and structural analysis of the ribosomal RNA gene cluster of the free-living diplomonad Trepomonas agilis
    • Morin, L. 2000. Long branch attraction effects and the status of "basal eukaryotes:" phytogeny and structural analysis of the ribosomal RNA gene cluster of the free-living diplomonad Trepomonas agilis. J. Eukaryot. Microbiol. 47:167-177.
    • (2000) J. Eukaryot. Microbiol. , vol.47 , pp. 167-177
    • Morin, L.1
  • 103
    • 0030934592 scopus 로고    scopus 로고
    • Effects of nucleotide sequence alignment on phytogeny estimation: A case study of 18S rDNAs of Apicomplexa
    • Morrison, D. A., and J. T. Ellis. 1997. Effects of nucleotide sequence alignment on phytogeny estimation: a case study of 18S rDNAs of Apicomplexa. Mol. Biol. Evol. 14:428-441.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 428-441
    • Morrison, D.A.1    Ellis, J.T.2
  • 105
    • 0032815223 scopus 로고    scopus 로고
    • Phylogenetic relationships of the genus Frenkelia: A review of its history and new knowledge gained from comparison of large subunit ribosomal ribonucleic acid gene sequences
    • Mugridge, N. B., D. A. Morrison, A. M. Johnson, K. Luton, J. Dubey, J. Votypka, and A. M. Tenter. 1999. Phylogenetic relationships of the genus Frenkelia: a review of its history and new knowledge gained from comparison of large subunit ribosomal ribonucleic acid gene sequences. Int. J. Parasitol. 29:957-972.
    • (1999) Int. J. Parasitol. , vol.29 , pp. 957-972
    • Mugridge, N.B.1    Morrison, D.A.2    Johnson, A.M.3    Luton, K.4    Dubey, J.5    Votypka, J.6    Tenter, A.M.7
  • 106
    • 0026016509 scopus 로고
    • The conserved GTPase center and variable region V9 from Saccharomyces cerevisiae 26S rRNA can be replaced by their equivalents from other prokaryotes or eukaryotes without detectable loss of ribosomal function
    • Musters, W., P. M. Goncalves, K. Boon, H. A. Gaué, H. van Heerikhuizen, and R. J. Planta. 1991. The conserved GTPase center and variable region V9 from Saccharomyces cerevisiae 26S rRNA can be replaced by their equivalents from other prokaryotes or eukaryotes without detectable loss of ribosomal function. Proc. Natl. Acad. Sci. USA 88:1469-1473.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 1469-1473
    • Musters, W.1    Goncalves, P.M.2    Boon, K.3    Gaué, H.A.4    Van Heerikhuizen, H.5    Planta, R.J.6
  • 108
    • 0028513079 scopus 로고
    • Molecular systematics of hystricognath rodents: Evidence from the mitochondrial 12S rRNA gene
    • Nedbal, M. A., M. W. Allard, and R. L. Honeycutt. 1994. Molecular systematics of hystricognath rodents: evidence from the mitochondrial 12S rRNA gene. Mol. Phylogenet. Evol. 3:206-220.
    • (1994) Mol. Phylogenet. Evol. , vol.3 , pp. 206-220
    • Nedbal, M.A.1    Allard, M.W.2    Honeycutt, R.L.3
  • 110
    • 0030813152 scopus 로고    scopus 로고
    • RAGA: RNA sequence alignment by genetic algorithm
    • Notredame, C., E. A. O'Brien, and D. G. Higgins. 1997. RAGA: RNA sequence alignment by genetic algorithm. Nucleic Acids Res. 25:4570-4580.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4570-4580
    • Notredame, C.1    O'Brien, E.A.2    Higgins, D.G.3
  • 111
    • 3242665843 scopus 로고
    • On the numbers of genera and species of Chalcidoidea (Hymenoptera) in the world
    • Noyes, J. S. 1978. On the numbers of genera and species of Chalcidoidea (Hymenoptera) in the world. Entomol. Gaz. 29: 163-164.
    • (1978) Entomol. Gaz. , vol.29 , pp. 163-164
    • Noyes, J.S.1
  • 112
    • 0343334579 scopus 로고
    • The number of described chalcidoid taxa that are currently regarded as valid
    • -. 1990. The number of described chalcidoid taxa that are currently regarded as valid. Chalcid Forum (News1.) 13:9-10.
    • (1990) Chalcid Forum (News1.) , vol.13 , pp. 9-10
  • 113
    • 0002813991 scopus 로고    scopus 로고
    • Encyrtidae of Costa Rica (Hymenoptera: Chalcidoidea), 1. The subfamily Tetracneminae, parasitoids of mealybugs (Homoptera: Pseudococcidae)
    • -. 2000. Encyrtidae of Costa Rica (Hymenoptera: Chalcidoidea), 1. The subfamily Tetracneminae, parasitoids of mealybugs (Homoptera: Pseudococcidae). Mem. Am. Entomol. Inst. 62:1-355.
    • (2000) Mem. Am. Entomol. Inst. , vol.62 , pp. 1-355
  • 115
    • 0029923819 scopus 로고    scopus 로고
    • Simplicity correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order Isopoda
    • Nunn, G. B., B. F. Theisen, B. Christensen, and P. Arctander. 1996. Simplicity correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order Isopoda. J. Mol. Evol. 42:211-223.
    • (1996) J. Mol. Evol. , vol.42 , pp. 211-223
    • Nunn, G.B.1    Theisen, B.F.2    Christensen, B.3    Arctander, P.4
  • 116
    • 0030012168 scopus 로고    scopus 로고
    • Patterns of nucleotide change in mitochondrial ribosomal RNA genes and the phylogeny of piranhas
    • Ortí, G., P. Petry, J. I. R. Porto, M. Jégu, and A. Meyer. 1996. Patterns of nucleotide change in mitochondrial ribosomal RNA genes and the phylogeny of piranhas. J. Mol. Evol. 42:169-182.
    • (1996) J. Mol. Evol. , vol.42 , pp. 169-182
    • Ortí, G.1    Petry, P.2    Porto, J.I.R.3    Jégu, M.4    Meyer, A.5
  • 117
    • 0033775948 scopus 로고    scopus 로고
    • 18S rRNA secondary structure and phylogenetic position of Peloridiidae (Insecta, Hemiptera)
    • Ouvrard, D., B. C. Campbell, T. Bourgoin, and K. L. Chan. 2000. 18S rRNA secondary structure and phylogenetic position of Peloridiidae (Insecta, Hemiptera). Mol. Phylogenet. Evol. 16:403-417.
    • (2000) Mol. Phylogenet. Evol. , vol.16 , pp. 403-417
    • Ouvrard, D.1    Campbell, B.C.2    Bourgoin, T.3    Chan, K.L.4
  • 118
    • 0034667925 scopus 로고    scopus 로고
    • Comparative analysis of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching
    • Page, R. D. M. 2000. Comparative analysis of insect mitochondrial small subunit ribosomal RNA using maximum weighted matching. Nucleic Acids Res. 28:3839-3845.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3839-3845
    • Page, R.D.M.1
  • 119
    • 0035984509 scopus 로고    scopus 로고
    • Louse (Insecta: Phthiraptera) mitochondrial 12S rRNA secondary structure is highly variable
    • Page, R. D. M., R. Crulckshank, and K. P. Johnson. 2002. Louse (Insecta: Phthiraptera) mitochondrial 12S rRNA secondary structure is highly variable. Insect Mol. Biol. 11:361-369.
    • (2002) Insect Mol. Biol. , vol.11 , pp. 361-369
    • Page, R.D.M.1    Crulckshank, R.2    Johnson, K.P.3
  • 120
    • 0037489641 scopus 로고    scopus 로고
    • A revision of the Encarsia longifasciata species group (Hymenoptera: Aphelinidae)
    • Pedata, P. A., and A. Polaszek. 2003. A revision of the Encarsia longifasciata species group (Hymenoptera: Aphelinidae). Syst. Entomol. 28:361-374.
    • (2003) Syst. Entomol. , vol.28 , pp. 361-374
    • Pedata, P.A.1    Polaszek, A.2
  • 121
    • 1342268775 scopus 로고    scopus 로고
    • An empirical test of the treatment of indels during optimization alignment based on the phylogeny of the genus Secale (Poaceae)
    • Petersen, G., O. Seberg, L. Aagesen, and S. Frederiksen. 2004. An empirical test of the treatment of indels during optimization alignment based on the phylogeny of the genus Secale (Poaceae). Mol. Phylogenet. Evol. 30:733-742.
    • (2004) Mol. Phylogenet. Evol. , vol.30 , pp. 733-742
    • Petersen, G.1    Seberg, O.2    Aagesen, L.3    Frederiksen, S.4
  • 122
    • 0033447974 scopus 로고    scopus 로고
    • Incongruence between morphological data sets: An example from the evolution of endoparasitism among parasitic wasps (Hymenoptera: Braconidae)
    • Quicke, D. L. J., and R. Belshaw. 1999. Incongruence between morphological data sets: an example from the evolution of endoparasitism among parasitic wasps (Hymenoptera: Braconidae). Syst. Biol. 48:436-454.
    • (1999) Syst. Biol. , vol.48 , pp. 436-454
    • Quicke, D.L.J.1    Belshaw, R.2
  • 124
    • 0027256086 scopus 로고
    • Three new small nucleolar RNAs that are psoralen cross-linked in vivo to unique regions of pre-rRNA
    • Rimoldi, O. J., B. Raghu, M. K. Mag, and G. L. Eliceiri. 1993. Three new small nucleolar RNAs that are psoralen cross-linked in vivo to unique regions of pre-rRNA. Mol. Cell. Biol. 13:4382-4390.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 4382-4390
    • Rimoldi, O.J.1    Raghu, B.2    Mag, M.K.3    Eliceiri, G.L.4
  • 125
    • 0025721938 scopus 로고
    • Evolution of compensatory substitutions through GU intermediate state in Drosophila rRNA
    • Rousset, F., M. Pelandakis, and M. Solignac. 1991. Evolution of compensatory substitutions through GU intermediate state in Drosophila rRNA. Proc. Natl. Acad. Sci. USA 88:10032-10036.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 10032-10036
    • Rousset, F.1    Pelandakis, M.2    Solignac, M.3
  • 126
    • 0029877001 scopus 로고    scopus 로고
    • Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23S-like) ribosomal RNA
    • Schnare, M. N., S. H. Damberger, M. W. Gray, and R. R. Gutell. 1996. Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23S-like) ribosomal RNA. J. Mol. Biol. 256:701-719.
    • (1996) J. Mol. Biol. , vol.256 , pp. 701-719
    • Schnare, M.N.1    Damberger, S.H.2    Gray, M.W.3    Gutell, R.R.4
  • 127
    • 0038806423 scopus 로고    scopus 로고
    • Simultaneous analysis of basal Hymenoptera (Insecta): Introducing robust-choice sensitivity analysis
    • Schulmeister, S. 2003. Simultaneous analysis of basal Hymenoptera (Insecta): Introducing robust-choice sensitivity analysis. Biol. J. Linn. Soc. 79:245-275.
    • (2003) Biol. J. Linn. Soc. , vol.79 , pp. 245-275
    • Schulmeister, S.1
  • 128
    • 0033013683 scopus 로고    scopus 로고
    • Estimating the contributions of selection and self-organization in RNA secondary structure
    • Schultes, E. A., P. T. Hraber, and T. H. LaBean. 1999. Estimating the contributions of selection and self-organization in RNA secondary structure. J. Mol. Evol. 49:76-83.
    • (1999) J. Mol. Evol. , vol.49 , pp. 76-83
    • Schultes, E.A.1    Hraber, P.T.2    LaBean, T.H.3
  • 129
    • 0025187499 scopus 로고
    • Comparing multiple RNA secondary structures using tree comparisons
    • Shapiro, B. A., and K. Zhang. 1990. Comparing multiple RNA secondary structures using tree comparisons. CABIOS 6:309-318.
    • (1990) CABIOS , vol.6 , pp. 309-318
    • Shapiro, B.A.1    Zhang, K.2
  • 130
    • 2442507933 scopus 로고    scopus 로고
    • Independence of alignment and tree search
    • Simmons, M. 2004. Independence of alignment and tree search. Mol. Phylogenet. Evol. 31:874-879.
    • (2004) Mol. Phylogenet. Evol. , vol.31 , pp. 874-879
    • Simmons, M.1
  • 131
    • 0029815120 scopus 로고    scopus 로고
    • Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules
    • Springer, M. S., and E. Douzery. 1996. Secondary structure and patterns of evolution among mammalian mitochondrial 12S rRNA molecules. J. Mol. Evol. 43:357-373.
    • (1996) J. Mol. Evol. , vol.43 , pp. 357-373
    • Springer, M.S.1    Douzery, E.2
  • 132
    • 0028834744 scopus 로고
    • Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals
    • Springer, M. S., L. J. Hollar, and A. Burk. 1995. Compensatory substitutions and the evolution of the mitochondrial 12S rRNA gene in mammals. Mol. Biol. Evol. 12:1138-1150.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1138-1150
    • Springer, M.S.1    Hollar, L.J.2    Burk, A.3
  • 133
    • 0028303179 scopus 로고
    • An rRNA variable region has an evolutionary conserved essential role despite sequence divergence
    • Sweeney, R., L. Chen, and M.-C. Yao. 1994. An rRNA variable region has an evolutionary conserved essential role despite sequence divergence. Mol. Cell. Biol. 14:4203-4215.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 4203-4215
    • Sweeney, R.1    Chen, L.2    Yao, M.-C.3
  • 134
    • 0024634987 scopus 로고
    • Identifying functional regions of rRNA by insertion mutagenesis and complete gene replacement in Tetrahymena thermophila
    • Sweeney. R., and M.-C. Yao. 1989. Identifying functional regions of rRNA by insertion mutagenesis and complete gene replacement in Tetrahymena thermophila. EMBO J 8:933-938.
    • (1989) EMBO J , vol.8 , pp. 933-938
    • Sweeney, R.1    Yao, M.-C.2
  • 137
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 138
    • 0030208308 scopus 로고    scopus 로고
    • Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania)
    • Titus, T. A., and D. R. Frost. 1996. Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania). Mol. Phylogenet. Evol. 6:49-62.
    • (1996) Mol. Phylogenet. Evol. , vol.6 , pp. 49-62
    • Titus, T.A.1    Frost, D.R.2
  • 139
    • 0032415046 scopus 로고    scopus 로고
    • Comparison of the nucleotide sequence and secondary structure of the 5.8S ribosomal RNA gene of Chlamydomonas tetragama with those of green algae
    • Uchida, H., K. Kitae, K. I. Tomizawa, and A. Yokota. 1998. Comparison of the nucleotide sequence and secondary structure of the 5.8S ribosomal RNA gene of Chlamydomonas tetragama with those of green algae. DNA Seq. 8:403-408.
    • (1998) DNA Seq. , vol.8 , pp. 403-408
    • Uchida, H.1    Kitae, K.2    Tomizawa, K.I.3    Yokota, A.4
  • 140
    • 4344612336 scopus 로고    scopus 로고
    • Molecular methods in classical biological control
    • T. S. Bellows, and T. W. Fisher, eds. Academic Press, San Diego, Calif.
    • Unruh, T. R., and J. B. Woolley. 1999. Molecular methods in classical biological control. Pp. 57-85 in T. S. Bellows, and T. W. Fisher, eds. Handbook of biological control. Academic Press, San Diego, Calif.
    • (1999) Handbook of Biological Control , pp. 57-85
    • Unruh, T.R.1    Woolley, J.B.2
  • 141
    • 0027309533 scopus 로고
    • Rates and patterns of base change in the small subunit ribosomal RNA gene
    • Vawter, L., and W. M. Brown. 1993. Rates and patterns of base change in the small subunit ribosomal RNA gene. Genetics 134:597-608.
    • (1993) Genetics , vol.134 , pp. 597-608
    • Vawter, L.1    Brown, W.M.2
  • 143
    • 0345621887 scopus 로고
    • Ricerche sugli Hymenoptera Chalcidoidea XXVIII. Studio morfologico comparativo dell'armatura genitale esterne maschile dei Trichogrammatidae
    • Viggiani, G. 1971. Ricerche sugli Hymenoptera Chalcidoidea XXVIII. Studio morfologico comparativo dell'armatura genitale esterne maschile dei Trichogrammatidae. Boll. Lab. Ent. Agr. "Filippo Silvestri" 29:181-222.
    • (1971) Boll. Lab. Ent. Agr. "Filippo Silvestri" , vol.29 , pp. 181-222
    • Viggiani, G.1
  • 144
    • 3042713469 scopus 로고
    • Further contribution to the knowledge of the male genitalia in the Trichogrammatidae (Hym. Chalcidoidea)
    • -. 1984. Further contribution to the knowledge of the male genitalia in the Trichogrammatidae (Hym. Chalcidoidea). Boll. Lab. Ent. Agr. "Filippo Silvestri" 41:173-182.
    • (1984) Boll. Lab. Ent. Agr. "Filippo Silvestri" , vol.41 , pp. 173-182
  • 145
    • 0025923821 scopus 로고
    • Chelex® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material
    • Walsh, P. A., D. A. Metzger, and R. Higuchi. 1991. Chelex® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506-513.
    • (1991) Biotechniques , vol.10 , pp. 506-513
    • Walsh, P.A.1    Metzger, D.A.2    Higuchi, R.3
  • 146
    • 0033505348 scopus 로고    scopus 로고
    • Fixed character states and the optimization of molecular sequence data
    • Wheeler, W. C. 1999. Fixed character states and the optimization of molecular sequence data. Cladistics 15:379-385.
    • (1999) Cladistics , vol.15 , pp. 379-385
    • Wheeler, W.C.1
  • 147
    • 0023672228 scopus 로고
    • Paired sequence difference in ribosomal RNAs: Evolutionary and phylogenetic implications
    • Wheeler, W. C., and R. L. Honeycutt. 1988. Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications. Mol. Biol. Evol. 5:90-96.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 90-96
    • Wheeler, W.C.1    Honeycutt, R.L.2
  • 148
    • 0031741183 scopus 로고    scopus 로고
    • Hierarchical analysis of variation in the mitochondrial 16S rRNA gene among Hymenoptera
    • Whitfield, J. B., and S. A. Cameron. 1998. Hierarchical analysis of variation in the mitochondrial 16S rRNA gene among Hymenoptera. Mol. Biol. Evol. 15:1728-1743.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 1728-1743
    • Whitfield, J.B.1    Cameron, S.A.2
  • 149
    • 0009573359 scopus 로고
    • Studies of the structure of eukaryotic (mammalian) ribosomes
    • J. Hardesty and G. Kramer, eds. Springer-Verlag, New York
    • Wool, I. G. 1986. Studies of the structure of eukaryotic (mammalian) ribosomes. Pp. 391-411 in J. Hardesty and G. Kramer, eds. Structure, function and genetics of ribosomes. Springer-Verlag, New York.
    • (1986) Structure, Function and Genetics of Ribosomes , pp. 391-411
    • Wool, I.G.1
  • 150
    • 0034350366 scopus 로고    scopus 로고
    • Phylogenetic relationship among horseshoe crab species: The effect of substitution models on phylogenetic analyses
    • Xia, X. 2000. Phylogenetic relationship among horseshoe crab species: the effect of substitution models on phylogenetic analyses. Syst. Biol. 49:87-100.
    • (2000) Syst. Biol. , vol.49 , pp. 87-100
    • Xia, X.1
  • 151
    • 0038487293 scopus 로고    scopus 로고
    • 18S ribosomal RNA and tetrapod phylogeny
    • Xia, X., Z. Xie, and K. M. Kjer. 2003. 18S ribosomal RNA and tetrapod phylogeny. Syst. Biol. 52:283-295.
    • (2003) Syst. Biol. , vol.52 , pp. 283-295
    • Xia, X.1    Xie, Z.2    Kjer, K.M.3
  • 152
    • 84974379627 scopus 로고
    • Cretaceous chalcidoid fossils from Canadian Amber
    • Yoshimoto, C. 1975. Cretaceous chalcidoid fossils from Canadian Amber. Can. Entomol. 107:499-528.
    • (1975) Can. Entomol. , vol.107 , pp. 499-528
    • Yoshimoto, C.1
  • 153
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • J. Barciszewski and B. F. C. Clark, eds., NATO ASI Series. Kluwer Academic Publishers, Boston, Mass.
    • Zuker, M., D. H. Mathews, and D. H. Turner. 1999. Algorithms. and thermodynamics for RNA secondary structure prediction: a practical guide. Pp. 11-43 in J. Barciszewski and B. F. C. Clark, eds. RNA biochemistry and biotechnology, NATO ASI Series. Kluwer Academic Publishers, Boston, Mass.
    • (1999) RNA Biochemistry and Biotechnology , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.