-
1
-
-
0002367729
-
MOLPHY Version 2.3: Programs for molecular phylogenetics based on maximum likelihood
-
Adachi, J., and M. Hasegawa. 1996. MOLPHY Version 2.3: programs for molecular phylogenetics based on maximum likelihood. Comput. Sci. Monogr. 28:1-150.
-
(1996)
Comput. Sci. Monogr.
, vol.28
, pp. 1-150
-
-
Adachi, J.1
Hasegawa, M.2
-
2
-
-
0028172520
-
Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene
-
Cao, Y., J. Adachi, A. Janke, S. Paabo, and M. Hasegawa. 1994. Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: instability of a tree based on a single gene. J. Mol. Evol. 39:519-527.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 519-527
-
-
Cao, Y.1
Adachi, J.2
Janke, A.3
Paabo, S.4
Hasegawa, M.5
-
3
-
-
0034707202
-
Phylogenetic position of turtles among amniotes: Evidence from mitochondrial and nuclear genes
-
Cao, Y., M. D. Sorenson, Y. Kumazawa, D. P. Mindell, and M. Hasegawa. 2000. Phylogenetic position of turtles among amniotes: evidence from mitochondrial and nuclear genes. Gene 259:139-148.
-
(2000)
Gene
, vol.259
, pp. 139-148
-
-
Cao, Y.1
Sorenson, M.D.2
Kumazawa, Y.3
Mindell, D.P.4
Hasegawa, M.5
-
5
-
-
0031287772
-
Reptile phylogeny and the interrelationships of turtles
-
deBraga, M., and O. Rieppel. 1997. Reptile phylogeny and the interrelationships of turtles. Zool. J. Linn. Soc. 120:281-354.
-
(1997)
Zool. J. Linn. Soc.
, vol.120
, pp. 281-354
-
-
DeBraga, M.1
Rieppel, O.2
-
6
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
7
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
-. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
-
8
-
-
0002936990
-
Molecular evidence for the early history of living vertebrates
-
P. E. Ahlberg, ed. Taylor & Francis, London
-
Hedges, S. B. 2001. Molecular evidence for the early history of living vertebrates. Pp. 119-134 in P. E. Ahlberg, ed. Major events in early vertebrate evolution. Taylor & Francis, London.
-
(2001)
Major Events in Early Vertebrate Evolution
, pp. 119-134
-
-
Hedges, S.B.1
-
9
-
-
0033548225
-
A molecular phylogeny of reptiles
-
Hedges, S. B., and L. L. Poling. 1999. A molecular phylogeny of reptiles. Science 283:998-1001.
-
(1999)
Science
, vol.283
, pp. 998-1001
-
-
Hedges, S.B.1
Poling, L.L.2
-
10
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones, D. T., W. R. Taylor, and J. M. Thornton. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
11
-
-
0034819230
-
Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny
-
Katoh, K., K. Kuma, and T. Miyata. 2001. Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny. J. Mol. Evol. 53:477-484.
-
(2001)
J. Mol. Evol.
, vol.53
, pp. 477-484
-
-
Katoh, K.1
Kuma, K.2
Miyata, T.3
-
12
-
-
0037100671
-
MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
-
Katoh, K., K. Misawa, K. Kuma, and T. Miyata. 2002. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30:3059-3066.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 3059-3066
-
-
Katoh, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
13
-
-
3242720295
-
Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes
-
Kikugawa, K., K. Katoh, S. Kuraku, H. Sakurai, O. Ishida, N. Iwabe, and T. Miyata. 2004. Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes. BMC Biol. 2:3.
-
(2004)
BMC Biol.
, vol.2
, pp. 3
-
-
Kikugawa, K.1
Katoh, K.2
Kuraku, S.3
Sakurai, H.4
Ishida, O.5
Iwabe, N.6
Miyata, T.7
-
14
-
-
0025181359
-
Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
-
Kishino, H., T. Miyata, and M. Hasegawa. 1990. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J. Mol. Evol. 31:151-160.
-
(1990)
J. Mol. Evol.
, vol.31
, pp. 151-160
-
-
Kishino, H.1
Miyata, T.2
Hasegawa, M.3
-
15
-
-
0033013699
-
Complete mitochondrial DNA sequences of the green turtle and blue-tailed mole skink: Statistical evidence for archosaurian affinity of turtles
-
Kumazawa, Y., and M. Nishida. 1999. Complete mitochondrial DNA sequences of the green turtle and blue-tailed mole skink: statistical evidence for archosaurian affinity of turtles. Mol. Biol. Evol. 16:784-792.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 784-792
-
-
Kumazawa, Y.1
Nishida, M.2
-
16
-
-
0031287774
-
Pareiasaur phylogeny and the origin of turtles
-
Lee, M. S. Y. 1997. Pareiasaur phylogeny and the origin of turtles. Zool. J. Linn. Soc. 120:197-280.
-
(1997)
Zool. J. Linn. Soc.
, vol.120
, pp. 197-280
-
-
Lee, M.S.Y.1
-
17
-
-
0033208787
-
Molecular evidence for a clade of turtles
-
Mannen, H., and S. S. Li. 1999. Molecular evidence for a clade of turtles. Mol. Phylogenet. Evol. 13:144-148.
-
(1999)
Mol. Phylogenet. Evol.
, vol.13
, pp. 144-148
-
-
Mannen, H.1
Li, S.S.2
-
18
-
-
0019134329
-
Molecular evolution of mRNA: A method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application
-
Miyata, T., and T. Yasunaga. 1980. Molecular evolution of mRNA: a method for estimating evolutionary rates of synonymous and amino acid substitutions from homologous nucleotide sequences and its application. J. Mol. Evol. 16:23-36.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 23-36
-
-
Miyata, T.1
Yasunaga, T.2
-
19
-
-
0842337367
-
Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome
-
Rest, J. S., J. C. Ast, C. C. Austin, P. J. Waddell, E. A. Tibbetts, J. M. Hay, and D. P. Mindell. 2003. Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome. Mol. Phylogenet. Evol. 29:289-297.
-
(2003)
Mol. Phylogenet. Evol.
, vol.29
, pp. 289-297
-
-
Rest, J.S.1
Ast, J.C.2
Austin, C.C.3
Waddell, P.J.4
Tibbetts, E.A.5
Hay, J.M.6
Mindell, D.P.7
-
20
-
-
0029660251
-
Turtles as diapsid reptiles
-
Rieppel, O., and M. deBraga. 1996. Turtles as diapsid reptiles. Nature 384:453-455.
-
(1996)
Nature
, vol.384
, pp. 453-455
-
-
Rieppel, O.1
DeBraga, M.2
-
21
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira, H., and M. Hasegawa. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17:1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
22
-
-
0033851521
-
Human chromosomes 3 and 21 are the products of an ancestral gene arrangement that is at least 300 million years old
-
Smith, J., J. Reboul, G. Lutfalla, and D. W. Burt. 2000. Human chromosomes 3 and 21 are the products of an ancestral gene arrangement that is at least 300 million years old. Mamm. Genome 11:806-807.
-
(2000)
Mamm. Genome
, vol.11
, pp. 806-807
-
-
Smith, J.1
Reboul, J.2
Lutfalla, G.3
Burt, D.W.4
-
23
-
-
3242743113
-
The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes
-
Takezaki, N., F. Figueroa, Z. Zaleska-Rutczynska, N. Takahata, and J. Klein. 2004. The phylogenetic relationship of tetrapod, coelacanth, and lungfish revealed by the sequences of forty-four nuclear genes. Mol. Biol. Evol. 21:1512-1524.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1512-1524
-
-
Takezaki, N.1
Figueroa, F.2
Zaleska-Rutczynska, Z.3
Takahata, N.4
Klein, J.5
-
24
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
25
-
-
0032564364
-
Complete mitochondrial genome suggests diapsid affinities of turtles
-
Zardoya, R., and A. Meyer. 1998. Complete mitochondrial genome suggests diapsid affinities of turtles. Proc. Natl. Acad. Sci. USA 95:14226-14231.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14226-14231
-
-
Zardoya, R.1
Meyer, A.2
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