Trends in analytical methodology in food safety and quality: monitoring microorganisms and genetically modified organisms

Trends in Food Science and Technology

Volumn 18, Issue 6, 2007, Pages 306-319

  Rodríguez Lázaro, David ^a,b   Lombard, Bertrand ^c   Smith, Huw ^d   Rzezutka, Artur ^e   D'Agostino, Martin ^f   Helmuth, Reiner ^g   Schroeter, Andreas ^g   Malorny, Burkhard ^g   Miko, Angelika ^g   Guerra, Beatriz ^g   Davison, John ^h   Kobilinsky, A ⁱ   Hernández, Marta ^b   Bertheau, Yves ^h   Cook, Nigel ^f  

^a UNIVERSITY OF BRISTOL   (United Kingdom)

^b INSTITUTO TECNOLÓGICO AGRARIO DE CASTILLA Y LEÓN   (Spain)

^c Healthy Pigs Production and Experimentation Section   (France)

^d Scottish Parasite Diagnostic Laboratory   (United Kingdom)

^e NATIONAL VETERINARY RESEARCH INSTITUTE   (Poland)

^f CENTRAL SCIENCE LABORATORY   (United Kingdom)

^g FEDERAL INSTITUTE FOR RISK ASSESSMENT   (Germany)

^h CEMAGREF   (France)

ⁱ UR341 National Agronomical Research Institute (INRA)   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MICROORGANISMS; PATHOGENS; QUALITY ASSURANCE; STANDARDIZATION;

FOOD INDUSTRY; FOOD QUALITY; FOOD SAFETY; GENETICALLY MODIFIED ORGANISMS; RESEARCH GROUPS;

FOOD PRODUCTS;

EID: 34248160898     PISSN: 09242244     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tifs.2007.01.009     Document Type: Article

References (98)

1. Aarestrup F.M. Monitoring of antimicrobial resistance among food animals: principles and limitations. Journal of Veterinary Medicine B. Infectious Diseases Veterinary Public Health 51 (2004) 380-388
2. Aarestrup F.M. Antimicrobial resistance in bacteria of animal origin (2006), ASM Press, Washington, DC
3. Aarts H.J., Boumedine K.S., Nesme X., and Cloeckaert A. Molecular tools for the characterisation of antibiotic-resistant bacteria. Veterinary Research 32 (2001) 363-380
4. Aarts H.J., Guerra B., and Malorny B. Molecular methods for detection of antibiotic resistance. In: Aarestrup F. (Ed). Antimicrobial resistance in bacteria of animal origin (2006), ASM Press, Washington, DC 37-48
5. Abdulmawjood A., Roth S., and Bülte M. Two methods for construction of internal amplification controls for the detection of Escherichia coli O157 by polymerase chain reaction. Molecular and Cellular Probes 16 (2002) 335-339
6. Anonymous. (2003). Directive 2003/99/EC of the European Parliament and the Council on the Monitoring of Zoonoses and Zoonotic Agents. Official Journal of the European Union L 325/31.
7. Anonymous. (2006). Manual for Reporting on Zoonoses, Zoonotic Agents, Antimicrobial Resistance and Foodborne Outbreaks in the framework of Directive 2003/90/EC. EFSA.
8. Berrada H., Soriano J.M., Pico Y., and Manes J. Quantification of Listeria monocytogenes in salads by real time quantitative PCR. International Journal of Food Microbiology 107 (2006) 202-206
9. Bidawid S., Farber J.M., and Sattar S.A. Contamination of foods by food handlers: experiments on hepatitis A virus transferred to food and its interruption. Applied and Environmental Microbiology 66 (2000) 2759-2763
10. Bidawid S., Farber J.M., and Sattar S.A. Rapid concentration and detection of hepatitis A virus from lettuce and strawberries. Journal of Virology Methods 88 (2000) 175-185
11. CLSI. (2006a). Methods for Dilution Antimicrobial Susceptibility Tests for Bacteria That Grow Aerobically. Approved Standard - Seventh Edition. M7-A7. Clinical and Laboratory Standards Institute, Wayne, USA 26.
12. CLSI. (2006b). Performance Standards for Antimicrobial Disk and Dilution Susceptibility Tests for Bacteria Isolated from Animals, M100-S16. Clinical and Laboratory Standards Institute, Wayne, USA 26.
13. Coelho C., Heinert A.P., Simões C.M.O., and Barardi C.R.M. Hepatitis A virus detection in oysters (Crassostrea gigas) in Santa Catarina state, Brazil, by reverse transcription-polymerase chain reaction. Journal of Food Protection 66 (2003) 507-511
14. Compton J. Nucleic acid sequence-based amplification. Nature 350 (1991) 91-92
15. Cone R.W., Hobson A.C., and Huang M.L. Coamplified positive control detects inhibition of polymerase chain reactions. Journal of Clinical Microbiology 30 (1992) 3185-3189
16. Cook N. The use of NASBA for the detection of microbial pathogens in food and environmental samples. Journal of Microbiological Methods 53 (2003) 165-174
17. Cook N., and Myint S.H. Modern methods for the detection of viruses in water and shellfish. Reviews in Medical Microbiology 6 (1995) 207-216
18. Cook N., Paton C.A., Wilkinson N., Nichols R.A.B., Barker K., and Smith H.V. Towards standard methods for the detection of Cryptosporidium parvum on lettuce and raspberries. Part 1: Development and optimization of methods. International Journal of Food Microbiology 109 (2006) 215-221
19. Cook N., Paton C.A., Wilkinson N., Nichols R.A.B., Barker K., and Smith H.V. Towards standard methods for the detection of Cryptosporidium parvum on lettuce and raspberries. Part 2: Validation. International Journal of Food Microbiology 109 (2006) 222-228
20. Croci L., De Medici D., Morace G., Fiore A., Scalfaro C., Beneduce F., et al. Detection of hepatitis A virus in shellfish by nested reverse transcription-PCR. International Journal of Food Microbiology 48 (1999) 67-71
21. Cromeans T.L., Nainan O.V., and Margolis H.S. Detection of hepatitis A virus RNA in oyster meat. Applied and Environmental Microbiology 63 (1997) 2460-2463
22. Deiman B., van Aarle P., and Sillekens P. Characteristics and applications of nucleic acid sequence-based amplification (NASBA). Molecular Biotechnology 20 (2002) 163-179
23. De Medici D., Croci L., Di Pasquale S., Fiore A., and Toti L. Detecting the presence of infectious hepatitis A virus in molluscs positive to RT-nested-PCR. Letters in Applied Microbiology 33 (2001) 362-366
24. Dubois E., Agier C., Traore O., Hennechart C., Merle G., Cruciere C., et al. Modified concentration method for the detection of enteric viruses on fruits and vegetables by reverse transcriptase-polymerase chain reaction or cell culture. Journal of Food Protection 65 (2002) 1962-1969
25. Eurobarometer No. 224. (2005). Available from http://europa.eu.int/comm/public_opinion/archives/ebs/ebs_224_report_en. pdf
26. Foulds I.V., Granacki A., Xiao C., Krull U.J., Castle A., and Horgen P.A. Quantification of microcystin-producing cyanobacteria and E. coli in water by 5'-nuclease PCR. Journal of Applied Microbiology 93 (2002) 825-834
27. Fujikawa H., Shimojima Y., and Yano K. Novel method for estimating viable Salmonella cell counts using real-time PCR. Shokuhin Eiseigaku Zasshi 47 (2006) 151-156
28. Girdwood R.W.A., and Smith H.V. Cryptosporidium. In: Robinson R., Batt C., and Patel P. (Eds). Encyclopaedia of food microbiology (1999), Academic Press, London 487-497
29. Guilbaud M., de Coppet P., Bourion F., Rachman C., Prevost H., and Dousset X. Quantitative detection of Listeria monocytogenes in biofilms by real-time PCR. Applied and Environmental Microbiology 71 (2005) 2190-2194
30. Halpin C. Gene stacking in transgenic plants - the challenge for 21st century plant biotechnology. Plant Biotechnology Journal 3 (2005) 141-155
31. Heid C.A., Stevens J., Livak K.J., and Williams P.M. Real time quantitative PCR. Genome Research 6 (1996) 986-994
32. Hein I., Klein D., Lehner A., Bubert A., Brandl E., and Wagner M. Detection and quantification of the iap gene of Listeria monocytogenes and Listeria innocua by a new real-time quantitative PCR assay. Research on Microbiology 152 (2001) 37-46
33. Hernández M., Rodríguez-Lázaro D., and Ferrando A. Current methodology for detection, identification and quantification of genetically modified organisms. Current Analytical Chemistry 1 (2005) 203-221
34. Hernández M., Rodríguez-Lázaro D., Zhang D., Esteve T., Pla M., and Prat S. Interlaboratory transfer of a PCR multiplex method for simultaneous detection of four genetically modified maize lines: Bt11, MON810, T25, and GA21. Journal of Agriculture and Food Chemistry 53 (2005) 3333-3337
35. Hinata N., Shirakawa T., Okada H., Shigemura K., Kamidono S., and Gotoh A. Quantitative detection of Escherichia coli from urine of patients with bacteriuria by real-time PCR. Molecular Diagnosis 8 (2004) 179-184
36. Holst-Jensen A., and Berdal K.G. The modular analytical procedure and validation approach and the units of measurement for genetically modified materials in foods and feeds. Journal of AOAC International 87 (2004) 927-936
37. Holst-Jensen A., De Loose M., and Van den Eede G. Coherence between legal requirements and approaches for detection of genetically modified organisms (GMOs) and their derived products. Journal of Agriculture and Food Chemistry 54 (2006) 2799-2809
38. Hoorfar J., and Cook N. Critical aspects in standardization of PCR. In: Sachse K., and Frey J. (Eds). Methods in molecular biology: PCR detection of microbial pathogens (2003), Humana Press, Totowa 51-64
39. Hough A.J., Harbison S.A., Savill M.G., Melton L.D., and Fletcher G. Rapid enumeration of Listeria monocytogenes in artificially contaminated cabbage using real-time polymerase chain reaction. Journal of Food Protection 65 (2002) 1329-1332
40. Ibekwe A.M., and Grieve C.M. Detection and quantification of Escherichia coli O157:H7 in environmental samples by real-time PCR. Journal of Applied Microbiology 94 (2003) 421-431
41. Ibekwe A.M., Watt P.M., Grieve C.M., Sharma V.K., and Lyons S.R. Multiplex fluorogenic real-time PCR for detection and quantification of Escherichia coli O157:H7 in dairy wastewater wetlands. Applied and Environmental Microbiology 68 (2002) 4853-4862
42. Inglis G.D., and Kalischuk L.D. Direct quantification of Campylobacter jejuni and Campylobacter lanienae in feces of cattle by real-time quantitative PCR. Applied and Environmental Microbiology 70 (2004) 2296-2306
43. Kaclikova E., Pangallo D., Oravcova K., Drahovska H., and Kuchta T. Quantification of Escherichia coli by kinetic 5'-nuclease polymerase chain reaction (real-time PCR) oriented to sfmD gene. Letters of Applied Microbiology 41 (2005) 132-135
44. Käferstein F.K., Motarjemi Y., and Bettcher D.W. Foodborne disease control: a transnational challenge. Emerging Infectious Diseases 3 (1997) 503-510
45. Kingsley D.H., and Richards G.P. A rapid and efficient extraction method for reverse transcription-PCR detection of hepatitis A and Norwalk-like viruses in shellfish. Applied and Environmental Microbiology 67 (2001) 4152-4157
46. Klein P.G., and Kuneja V.J. Sensitive detection of viable Listeria monocytogenes by reverse trascription-PCR. Applied and Environmental Microbiology 63 (1997) 4441-4448
47. Kurdziel A.S., Wilkinson N., Gordon S.H., and Cook N. Development of methods to detect foodborne viruses. In: Clark S.A., Thompson K.C., Keevil C.W., and Smith M.S. (Eds). Rapid detection assays for food and water (2001), Royal Society of Chemistry, Cambridge 175-177
48. Kurdziel A.S., Wilkinson N., Langton S., and Cook N. Survival of poliovirus on soft fruit and salad vegetables. Journal of Food Protection 64 (2001) 706-769
49. Kuribara H., Shindo Y., Matsuoka T., Takubo K., Futo S., Aoki N., et al. Novel reference molecules for quantitation of genetically modified maize and soybean. Journal of AOAC International 85 (2002) 1077-1089
50. Le Guyader F., Mittelholzer S., Haugarreau C.L., Hedlund K.-O., Asterlund R., Pommepuy M., et al. Detection of noroviruses in raspberries associated with a gastroenteritis outbreak. International Journal of Food Microbiology 97 (2004) 179-186
51. Leimanis S., Hernandez M., Fernandez S., Boyer F., Burns M., Bruderer S., et al. A microarray-based detection system for genetically modified (GM) food ingredients. Plant Molecular Biology 61 (2006) 123-139
52. Lopman B.A., Reacher M.H., van Duijnhoven Y., Hanon F.X., Brown D., and Koopmans M. Viral gastroenteritis outbreaks in Europe, 1995-2000. Emerging Infectious Diseases 9 (2003) 90-96
53. Malorny B., Tassios P.T., Rådström P., Cook N., Wagner M., and Hoorfar J. Standardization of diagnostic PCR for the detection of foodborne pathogens. International Journal of Food Microbiology 83 (2003) 39-48
54. Massi M.N., Shirakawa T., Gotoh A., Bishnu A., Hatta M., and Kawabata M. Quantitative detection of Salmonella enterica serovar Typhi from blood of suspected typhoid fever patients by real-time PCR. International Journal of Medical Microbiology 295 (2005) 117-120
55. Mattarucchi E., Weighardt F., Barbati C., Querciand M., and Van den Eede G. Development and applications of real-time PCR standards for GMO quantification based on tandem-marker plasmids. European Food Research and Technology 221 (2005)
56. Mead P.S., Slutsker L., Griffin P.M., and Tauxe R.V. Food-related illness and death in the United States. Emerging Infectious Diseases 5 (1999) 607-625
57. Nesvold H., Kristoffersen A.B., Holst-Jensen A., and Berdal K.G. Design of a DNA chip for detection of unknown genetically modified organisms (GMOs). Bioinformatics 21 (2005) 1917-1926
58. Nichols R.A.B., and Smith H.V. Cryptosporidium, Giardia and Cyclospora as foodborne pathogens. In: Blackburn C., and McClure P. (Eds). Foodborne pathogens: hazards, risk and control (2002), Woodhead Publishing Limited, Cambridge 453-478
59. Nogva H.K., Bergh A., Holck A., and Rudi K. Application of the 5'-nuclease PCR assay in the evaluation and development of methods for quantitative detection of Campylobacter jejuni. Applied and Environmental Microbiology 66 (2000) 4029-4036
60. Nogva H.K., and Lillehaug D. Detection and quantification of Salmonella in pure cultures using 5'-nuclease polymerase chain reaction. International Journal of Food Microbiology 51 (1999) 191-196
61. Nogva H.K., Rudi K., Naterstad K., Holck A., and Lillehaug D. Application of 5'-nuclease PCR for quantitative detection of Listeria monocytogenes in pure cultures, water, skim milk, and unpasteurized whole milk. Applied and Environmental Microbiology 66 (2000) 4266-4271
62. Oravcova K., Kaclikova E., Krascsenicsova K., Pangallo D., Brezna B., Siekel P., et al. Detection and quantification of Listeria monocytogenes by 5'-nuclease polymerase chain reaction targeting the actA gene. Letters of Applied Microbiology 42 (2006) 15-18
63. Penders J., Vink C., Driessen C., London N., Thijs C., and Stobberingh E.E. Quantification of Bifidobacterium spp., Escherichia coli and Clostridium difficile in faecal samples of breast-fed and formula-fed infants by real-time PCR. FEMS Microbiology Letters 243 (2005) 141-147
64. Piknova L., Kaclikova E., Pangallo D., Polek B., and Kuchta T. Quantification of Salmonella by 5'-nuclease real-time polymerase chain reaction targeted to fimC gene. Current Microbiology 50 (2005) 38-42
65. Rådström P., Knutsson R., Wolfs P., Dahlenborg, and Löfström Ch. Pre-PCR processing of sampling. In: Sachse K., and Frey J. (Eds). Methods in molecular biology: PCR detection of microbial pathogens (2003), Humana Press, Totowa 31-50
66. Rijpens N.P., and Herman L.M. Molecular methods for identification and detection of bacterial food pathogens. Journal of AOAC International 85 (2002) 984-995
67. Robertson L.J., and Gjerde B. Isolation and enumeration of Giardia cysts, Cryptosporidium oocysts, and Ascaris eggs from fruits and vegetables. Journal of Food Protection 63 (2000) 775-778
68. Robertson L.J., and Gjerde B. Factors affecting recovery efficiency in isolation of Cryptosporidium oocysts and Giardia cysts from vegetables for standard method development. Journal of Food Protection 64 (2001) 1799-1805
69. Robertson L.J., and Gjerde B. Occurrence of parasites on fruits and vegetables in Norway. Journal of Food Protection 64 (2001) 1793-1798
70. Rodríguez-Lázaro D., D'Agostino M., Pla M., and Cook N. A construction strategy for an internal amplification control (IAC) for real time NASBA-based diagnostic assays. Journal of Clinical Microbiology 42 (2004) 5832-5836
71. Rodríguez-Lázaro D., and Hernández M. Isolation of Listeria monocytogenes DNA from meat products for quantitative detection by real-time PCR. Journal of Rapid Methods and Automatisation in Microbiology 14 (2006) 395-404
72. Rodríguez-Lázaro D., Hernández M., D'Agostino M., and Cook N. Application of nucleic acid sequence based amplification (NASBA) for the detection of viable foodborne pathogens: progress and challenges. Journal of Rapid Methods and Automatisation in Microbiology 14 (2006) 218-236
73. Rodríguez-Lázaro D., Hernandez. M., and Pla M. Simultaneous quantitative detection of Listeria spp. and Listeria monocytogenes using a duplex real-time PCR-based assay. FEMS Microbiology Letters 233 (2004) 257-267
74. Rodríguez-Lázaro D., Hernandez M., Scortti M., Esteve T., Vazquez-Boland J.A., and Pla M. Quantitative detection of Listeria monocytogenes and Listeria innocua by real-time PCR: assessment of hly, iap, and lin02483 targets and AmpliFluor technology. Applied and Environmental Microbiology 70 (2004) 1366-1377
75. Rodriguez-Lazaro D., Jofre A., Aymerich T., Garriga M., and Pla M. Rapid quantitative detection of Listeria monocytogenes in salmon products: evaluation of pre-real-time PCR strategies. Journal of Food Protection 68 (2005) 1467-1471
76. Rodríguez-Lázaro D., Jofre A., Aymerich T., Hugas M., and Pla M. Rapid quantitative detection of Listeria monocytogenes in meat products by real-time PCR. Applied and Environmental Microbiology 70 (2004) 6299-6301
77. Rodríguez-Lázaro D., Pla M., Scortti M., Monzó H.J., and Vazquez-Boland J.A. A novel real-time PCR for Listeria monocytogenes that monitors analytical performance via an internal amplification control. Applied and Environmental Microbiology 71 (2005) 9008-9012
78. Rose J.B., and Slifko T.R. Giardia, Cryptosporidium, and Cyclospora and their impact upon foods: a review. Journal of Food Protection 62 (1999) 1059-1070
79. Rosenstraus M., Wang Z., Chang S.Y., DeBonville D., and Spadoro J.P. An internal control for routine diagnostic PCR: design, properties, and effect on clinical performance. Journal of Clinical Microbiology 36 (1998) 191-197
80. Rossen L., Nøskov P., Holmstrøm K., and Rasmussen O.F. Inhibition of PCR by components of food samples, microbial diagnostic assays and DNA extraction solution. International Journal of Food Microbiology 17 (1992) 37-45
81. Rudi K., Hoidal H.K., Katla T., Johansen B.K., Nordal J., and Jakobsen K.S. Direct real-time PCR quantification of Campylobacter jejuni in chicken fecal and cecal samples by integrated cell concentration and DNA purification. Applied and Environmental Microbiology 70 (2004) 790-797
82. Rudi K., Naterstad K., Dromtorp S.M., and Holo H. Detection of viable and dead Listeria monocytogenes on gouda-like cheeses by real-time PCR. Letters of Applied Microbiology 40 (2005) 301-306
83. Sair A.I., D'Souza D.H., Moe Ch.L., and Jaykus L.A. Improved detection of human enteric viruses in foods by RT-PCR. Journal of Virology Methods 100 (2002) 57-69
84. Scheu P.M., Berghof K., and Stahl U. Detection of pathogenic and spoilage microorganisms in food with the polymerase chain reaction. Food Microbiology 15 (1998) 13-31
85. Sekse C., Solberg A., Petersen A., Rudi K., and Wasteson Y. Detection and quantification of Shiga toxin-encoding genes in sheep faeces by real-time PCR. Molecular and Cellular Probes 19 (2005) 363-370
86. Seo K.H., Valentin-Bon I.E., and Brackett R.E. Detection and enumeration of Salmonella enteritidis in homemade ice cream associated with an outbreak: comparison of conventional and real-time PCR methods. Journal of Food Protection 69 (2006) 639-643
87. Sharma V.K. Detection and quantitation of enterohemorrhagic Escherichia coli O157, O111, and O26 in beef and bovine feces by real-time polymerase chain reaction. Journal of Food Protection 65 (2002) 1371-1380
88. Shieh Y.C., Calci K.R., and Baric R.S. A method to detect low levels of enteric viruses in contaminated oysters. Applied and Environmental Microbiology 65 (1999) 4709-4714
89. Stewart G.S. Challenging food microbiology from a molecular perspective. Microbiology 143 (1997) 2099-2108
90. Tenover F., and Rasheed K. Detection of antimicrobial resistance genes and mutations associated with antimicrobial resistance in microrganisms. In: Persing D.H., Tenover F.C., Versalovic J., Tang Y.U.E.R., and Relman D.A.W.T.J. (Eds). Molecular microbiology. Diagnostic principles and practice (2004), ASM Press, Washington, DC 391-406
91. Wallace D.J., Van Gilder T., Shallow S., Fiorentino T., Segler S.D., Smith K.E., et al., the FoodNet Working Group. Incidence of Foodborne Illnesses reported by the Foodborne Diseases Active Surveillance Network (FoodNet)-1997. Journal of Food Protection 63 (2000) 807-809
92. Watts J.L., and Lindemann C.J. Antimicrobial susceptibility testing of bacteria of veterinary origin. In: Aarestrup F. (Ed). Antimicrobial resistance in bacteria of animal origin (2006), ASM Press, Washington, DC
93. Weighardt F. European GMO labeling thresholds impractical and unscientific. Nature Biotechnology 24 (2006) 23-25
94. WHO. (2000). WHO/CDS/CSR/EDC/2000.7, Hepatitis A. World Health Organization Department of Communicable Disease Surviellance and Response. Available from www.who.int/emc.
95. Wolffs P.F., Glencross K., Thibaudeau R., and Griffiths M.W. Direct quantitation and detection of salmonellae in biological samples without enrichment, using two-step filtration and real-time PCR. Applied and Environmental Microbiology 72 (2006) 3896-3900
96. Wolffs P., Knutsson R., Norling B., and Radstrom P. Rapid quantification of Yersinia enterocolitica in pork samples by a novel sample preparation method, flotation, prior to real-time PCR. Journal of Clinical Microbiology 42 (2004) 1042-1047
97. Yang C., Jiang Y., Huang K., Zhu C., and Yin Y. Application of real-time PCR for quantitative detection of Campylobacter jejuni in poultry, milk and environmental water. FEMS Immunology and Medical Microbiology 38 (2003) 265-271
98. Yang C., Jiang Y., Huang K., Zhu C., Yin Y., Gong J.H., et al. A real-time PCR assay for the detection and quantitation of Campylobacter jejuni using SYBR Green I and the LightCycler. Yale Journal of Biological Medicine 77 (2004) 125-132