-
1
-
-
0030950532
-
DNA-binding specificity of Mcm1: Operator mutations that alter DNA-bending and transcriptional activities by a MADS box protein
-
Acton, T. B., H. Zhong, and A. K. Vershon. 1997. DNA-binding specificity of Mcm1: operator mutations that alter DNA-bending and transcriptional activities by a MADS box protein. Mol. Cell. Biol. 17:1881-1889.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 1881-1889
-
-
Acton, T.B.1
Zhong, H.2
Vershon, A.K.3
-
2
-
-
0343750650
-
Computational identification of cis-acting elements affecting post-transcriptional control of gene expression in Saccharomyces cerevisiae
-
Anderson, J. S. J., and R. Parker. 2000. Computational identification of cis-acting elements affecting post-transcriptional control of gene expression in Saccharomyces cerevisiae. Nucleic Acids Res. 28:1604-1617.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1604-1617
-
-
Anderson, J.S.J.1
Parker, R.2
-
3
-
-
0002587184
-
Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium
-
Andreasen, A., and T. Stier. 1953. Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium. J. Cell. Comp. Physiol. 41:23-36.
-
(1953)
J. Cell. Comp. Physiol.
, vol.41
, pp. 23-36
-
-
Andreasen, A.1
Stier, T.2
-
4
-
-
0000493179
-
Anaerobic nutrition of Saccharomyces cerevisiae. II. Unsaturated fatty acid requirement for growth in defined medium
-
Andreasen, A., and T. Stier. 1954. Anaerobic nutrition of Saccharomyces cerevisiae. II. Unsaturated fatty acid requirement for growth in defined medium. J. Cell. Comp. Physiol. 43:271-281.
-
(1954)
J. Cell. Comp. Physiol.
, vol.43
, pp. 271-281
-
-
Andreasen, A.1
Stier, T.2
-
5
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T. L., and C. Elkan. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2:28-36.
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
6
-
-
0036271384
-
The yeast transcriptome in aerobic and hypoxic conditions: Effects of hap1, rox1, rox3 and srb10 deletions
-
Becerra, M., L. J. Lombardia-Ferreira, N. C. Hauser, J. D. Hoheisel, B. Tizon, and M. E. Cerdan. 2002. The yeast transcriptome in aerobic and hypoxic conditions: effects of hap1, rox1, rox3 and srb10 deletions. Mol. Microbiol. 43:545-555.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 545-555
-
-
Becerra, M.1
Lombardia-Ferreira, L.J.2
Hauser, N.C.3
Hoheisel, J.D.4
Tizon, B.5
Cerdan, M.E.6
-
8
-
-
0029785920
-
Interaction of the GATA factor Gln3p with the nitrogen regulator Ure2p in Saccharomyces cerevisiae
-
Blinder, D., P. W. Coschigano, and B. Magasanik. 1996. Interaction of the GATA factor Gln3p with the nitrogen regulator Ure2p in Saccharomyces cerevisiae. J. Bacteriol. 178:4734-4736.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 4734-4736
-
-
Blinder, D.1
Coschigano, P.W.2
Magasanik, B.3
-
9
-
-
0025307385
-
Regulation of a yeast HSP70 gene by a cAMP responsive transcriptional control element
-
Boorstein, W. R., and E. A. Craig. 1990. Regulation of a yeast HSP70 gene by a cAMP responsive transcriptional control element. EMBO J. 9:2543-2553.
-
(1990)
EMBO J.
, vol.9
, pp. 2543-2553
-
-
Boorstein, W.R.1
Craig, E.A.2
-
10
-
-
23844443140
-
Effect of inhibition of the BC1 complex on gene expression profile in yeast
-
Bourges, I., S. Horan, and B. Meunier. 2005. Effect of inhibition of the BC1 complex on gene expression profile in yeast. J. Biol. Chem. 280:29743-29749.
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 29743-29749
-
-
Bourges, I.1
Horan, S.2
Meunier, B.3
-
11
-
-
0023797283
-
Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae
-
Buchman, A. R., W. J. Kimmerly, J. Rine, and R. D. Kornberg. 1988. Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae. Mol. Cell. Biol. 8:210-225.
-
(1988)
Mol. Cell. Biol.
, vol.8
, pp. 210-225
-
-
Buchman, A.R.1
Kimmerly, W.J.2
Rine, J.3
Kornberg, R.D.4
-
12
-
-
0031933909
-
A fermentor system for regulating oxygen at low concentrations in cultures of Saccharomyces cerevisiae
-
Burke, P. V., K. E. Kwast, F. Everts, and R. O. Poyton. 1998. A fermentor system for regulating oxygen at low concentrations in cultures of Saccharomyces cerevisiae. Appl. Environ. Microbiol. 64:1040-1044.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 1040-1044
-
-
Burke, P.V.1
Kwast, K.E.2
Everts, F.3
Poyton, R.O.4
-
13
-
-
1842736551
-
A rapid filtration apparatus for harvesting cells under controlled conditions for use in genome-wide temporal profiling studies
-
Burke, P. V., L. C. Lai, and K. E. Kwast. 2004. A rapid filtration apparatus for harvesting cells under controlled conditions for use in genome-wide temporal profiling studies. Anal. Biochem. 328:29-34.
-
(2004)
Anal. Biochem.
, vol.328
, pp. 29-34
-
-
Burke, P.V.1
Lai, L.C.2
Kwast, K.E.3
-
14
-
-
1842665662
-
Mitochondrial signaling: The retrograde response
-
Butow, R. A., and N. G. Avadhani. 2004. Mitochondrial signaling: the retrograde response. Mol. Cell 14:1-15.
-
(2004)
Mol. Cell
, vol.14
, pp. 1-15
-
-
Butow, R.A.1
Avadhani, N.G.2
-
15
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
Causton, H. C., B. Ren, S. S. Koh, C. T. Harbison, E. Kanin, E. G. Jennings, T. I. Lee, H. L. True, E. S. Lander, and R. A. Young. 2001. Remodeling of yeast genome expression in response to environmental changes. Mol. Biol. Cell 12:323-337.
-
(2001)
Mol. Biol. Cell
, vol.12
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
Jennings, E.G.6
Lee, T.I.7
True, H.L.8
Lander, E.S.9
Young, R.A.10
-
16
-
-
0030040585
-
Regulatory elements that control transcription activation and unsaturated fatty acid-mediated repression of the Saccharomyces cerevisiae OLE1 gene
-
Choi, J. Y., J. Stukey, S. Y. Hwang, and C. E. Martin. 1996. Regulatory elements that control transcription activation and unsaturated fatty acid-mediated repression of the Saccharomyces cerevisiae OLE1 gene. J. Biol. Chem. 271:3581-3589.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 3581-3589
-
-
Choi, J.Y.1
Stukey, J.2
Hwang, S.Y.3
Martin, C.E.4
-
17
-
-
0038724989
-
Finding functional features in Saccharomyces genomes by phylogenetic footprinting
-
Cliften, P., P. Sudarsanam, A. Desikan, L. Fulton, B. Fulton, J. Majors, R. Waterston, B. A. Cohen, and M. Johnston. 2003. Finding functional features in Saccharomyces genomes by phylogenetic footprinting. Science 301: 71-76.
-
(2003)
Science
, vol.301
, pp. 71-76
-
-
Cliften, P.1
Sudarsanam, P.2
Desikan, A.3
Fulton, L.4
Fulton, B.5
Majors, J.6
Waterston, R.7
Cohen, B.A.8
Johnston, M.9
-
18
-
-
0035253751
-
Induction and repression of DAN1 and the family of anaerobic mannoprotein genes in Saccharomyces cerevisiae occurs through a complex array of regulatory sites
-
Cohen, B. D., O. Sertil, N. E. Abramova, K. J. Davies, and C. V. Lowry. 2001. Induction and repression of DAN1 and the family of anaerobic mannoprotein genes in Saccharomyces cerevisiae occurs through a complex array of regulatory sites. Nucleic Acids Res. 29:799-808.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 799-808
-
-
Cohen, B.D.1
Sertil, O.2
Abramova, N.E.3
Davies, K.J.4
Lowry, C.V.5
-
19
-
-
0037453009
-
Integrating regulatory motif discovery and genome-wide expression analysis
-
Conlon, E. M., X. S. Liu, J. D. Lieb, and J. S. Liu. 2003. Integrating regulatory motif discovery and genome-wide expression analysis. Proc. Natl. Acad. Sci. USA 100:3339-3344.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 3339-3344
-
-
Conlon, E.M.1
Liu, X.S.2
Lieb, J.D.3
Liu, J.S.4
-
20
-
-
0021876110
-
Two nonidentical forms of subunit V are functional in yeast cytochrome c oxidase
-
Cumsky, M. G., C. Ko, C. E. Trueblood, and R. O. Poyton. 1985. Two nonidentical forms of subunit V are functional in yeast cytochrome c oxidase. Proc. Natl. Acad. Sci. USA 82:2235-2239.
-
(1985)
Proc. Natl. Acad. Sci. USA
, vol.82
, pp. 2235-2239
-
-
Cumsky, M.G.1
Ko, C.2
Trueblood, C.E.3
Poyton, R.O.4
-
21
-
-
0242355632
-
Calcineurin signaling in Saccharomyces cerevisiae: How yeast go crazy in response to stress
-
Cyert, M. S. 2003. Calcineurin signaling in Saccharomyces cerevisiae: how yeast go crazy in response to stress. Biochem. Biophys. Res. Commun. 311:1143-1150.
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.311
, pp. 1143-1150
-
-
Cyert, M.S.1
-
22
-
-
3743054687
-
The anatomy of a hypoxic operator in Saccharomyces cerevisiae
-
Deckert, J., A. M. Torres, S. M. Hwang, A. J. Kastaniotis, and R. S. Zitomer. 1998. The anatomy of a hypoxic operator in Saccharomyces cerevisiae. Genetics 150:1429-1441.
-
(1998)
Genetics
, vol.150
, pp. 1429-1441
-
-
Deckert, J.1
Torres, A.M.2
Hwang, S.M.3
Kastaniotis, A.J.4
Zitomer, R.S.5
-
23
-
-
33644932478
-
Yeast oxidative stress response
-
Demasi, A. P., G. A. Pereira, and L. E. Netto. 2006. Yeast oxidative stress response. FEBS J. 273:805-816.
-
(2006)
FEBS J.
, vol.273
, pp. 805-816
-
-
Demasi, A.P.1
Pereira, G.A.2
Netto, L.E.3
-
24
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
25
-
-
28644434811
-
A dual role for PP1 in shaping the Msn2-dependent transcriptional response to glucose starvation
-
De Wever, V., W. Reiter, A. Ballarini, G. Ammerer, and C. Brocard. 2005. A dual role for PP1 in shaping the Msn2-dependent transcriptional response to glucose starvation. EMBO J. 24:4115-4123.
-
(2005)
EMBO J.
, vol.24
, pp. 4115-4123
-
-
De Wever, V.1
Reiter, W.2
Ballarini, A.3
Ammerer, G.4
Brocard, C.5
-
26
-
-
0026659968
-
Global regulation of mitochondrial biogenesis in Saccharomyces cerevisiae: ABF1 and CPF1 play opposite roles in regulating expression of the QCR8 gene, which encodes subunit VIII of the mitochondrial ubiquinol-cytochrome c oxidoreductase
-
de Winde, J. H., and L. A. Grivell. 1992. Global regulation of mitochondrial biogenesis in Saccharomyces cerevisiae: ABF1 and CPF1 play opposite roles in regulating expression of the QCR8 gene, which encodes subunit VIII of the mitochondrial ubiquinol-cytochrome c oxidoreductase. Mol. Cell. Biol. 12:2872-2883.
-
(1992)
Mol. Cell. Biol.
, vol.12
, pp. 2872-2883
-
-
De Winde, J.H.1
Grivell, L.A.2
-
27
-
-
1642524964
-
Measurement of oxidative stress in cells exposed to hypoxia and other changes in oxygen concentration
-
Dirmeier, R., K. O'Brien, M. Engle, A. Dodd, E. Spears, and R. O. Poyton. 2004. Measurement of oxidative stress in cells exposed to hypoxia and other changes in oxygen concentration. Methods Enzymol. 381:589-603.
-
(2004)
Methods Enzymol.
, vol.381
, pp. 589-603
-
-
Dirmeier, R.1
O'Brien, K.2
Engle, M.3
Dodd, A.4
Spears, E.5
Poyton, R.O.6
-
28
-
-
0026576605
-
Parallel pathways of gene regulation: Homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase
-
Dohrmann, P. R., G. Butler, K. Tamai, S. Dorland, J. R. Greene, D. J. Thiele, and D. J. Stillman. 1992. Parallel pathways of gene regulation: homologous regulators SWI5 and ACE2 differentially control transcription of HO and chitinase. Genes Dev. 6:93-104.
-
(1992)
Genes Dev.
, vol.6
, pp. 93-104
-
-
Dohrmann, P.R.1
Butler, G.2
Tamai, K.3
Dorland, S.4
Greene, J.R.5
Thiele, D.J.6
Stillman, D.J.7
-
29
-
-
32444436985
-
Top-down approaches for measuring expression ratios of intact yeast proteins using Fourier transform mass spectrometry
-
Du, Y., B. A. Parks, S. Sohn, K. E. Kwast, and N. L. Kelleher. 2006. Top-down approaches for measuring expression ratios of intact yeast proteins using Fourier transform mass spectrometry. Anal. Chem. 78:686-694.
-
(2006)
Anal. Chem.
, vol.78
, pp. 686-694
-
-
Du, Y.1
Parks, B.A.2
Sohn, S.3
Kwast, K.E.4
Kelleher, N.L.5
-
30
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M. B., P. T. Spellman, P. O. Brown, and D. Botstein. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95:14863-14868.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
31
-
-
0031810672
-
Yeast carbon catabolite repression
-
Gancedo, J. M. 1998. Yeast carbon catabolite repression. Microbiol. Mol. Biol. Rev. 62:334-361.
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 334-361
-
-
Gancedo, J.M.1
-
32
-
-
0037057374
-
Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering
-
RESEARCH0059
-
Gasch, A. P., and M. B. Eisen. 2002. Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering. Genome Biol. 3:RESEARCH0059.
-
(2002)
Genome Biol.
, pp. 3
-
-
Gasch, A.P.1
Eisen, M.B.2
-
33
-
-
14044252090
-
Conservation and evolution of cis-regulatory systems in ascomycete fungi
-
Gasch, A. P., A. M. Moses, D. Y. Chiang, H. B. Fraser, M. Berardini. and M. B. Eisen. 2004. Conservation and evolution of cis-regulatory systems in ascomycete fungi. PLoS Biol. 2:e398.
-
(2004)
PLoS Biol.
, vol.2
-
-
Gasch, A.P.1
Moses, A.M.2
Chiang, D.Y.3
Fraser, H.B.4
Berardini, M.5
Eisen, M.B.6
-
34
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch, A. P., P. T. Spellman, C. M. Kao, O. Carmel-Harel, M. B. Eisen, G. Storz, D. Botstein, and P. O. Brown. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 11: 4241-4257.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
35
-
-
19344365947
-
Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
-
Gerber, A. P., D. Herschlag, and P. O. Brown. 2004. Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol. 2:E79.
-
(2004)
PLoS Biol.
, vol.2
-
-
Gerber, A.P.1
Herschlag, D.2
Brown, P.O.3
-
36
-
-
0031800748
-
Mot3, a Zn finger transcription factor that modulates gene expression and attenuates mating pheromone signaling in Saccharomyces cerevisiae
-
Grishin, A. V., M. Rothenberg, M. A. Downs, and K. J. Blumer. 1998. Mot3, a Zn finger transcription factor that modulates gene expression and attenuates mating pheromone signaling in Saccharomyces cerevisiae. Genetics 149:879-892.
-
(1998)
Genetics
, vol.149
, pp. 879-892
-
-
Grishin, A.V.1
Rothenberg, M.2
Downs, M.A.3
Blumer, K.J.4
-
37
-
-
25144456056
-
Computational cluster validation in post-genomic data analysis
-
Handl, J., J. Knowles, and D. B. Kell. 2005. Computational cluster validation in post-genomic data analysis. Bioinformatics 21:3201-3212.
-
(2005)
Bioinformatics
, vol.21
, pp. 3201-3212
-
-
Handl, J.1
Knowles, J.2
Kell, D.B.3
-
38
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
Harbison, C. T., D. B. Gordon, T. I. Lee, N. J. Rinaldi, K. D. Macisaac, T. W. Danford, N. M. Hannett, J. B. Tagne, D. B. Reynolds, J. Yoo, E. G. Jennings, J. Zeitlinger, D. K. Pokholok, M. Kellis, P. A. Rolfe, K. T. Takusagawa, E. S. Lander, D. K. Gifford, E. Fraenkel, and R. A. Young. 2004. Transcriptional regulatory code of a eukaryotic genome. Nature 431: 99-104.
-
(2004)
Nature
, vol.431
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
Jennings, E.G.11
Zeitlinger, J.12
Pokholok, D.K.13
Kellis, M.14
Rolfe, P.A.15
Takusagawa, K.T.16
Lander, E.S.17
Gifford, D.K.18
Fraenkel, E.19
Young, R.A.20
more..
-
39
-
-
0036894656
-
Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae
-
Horak, C. E., N. M. Luscombe, J. Qian, P. Bertone, S. Piccirrillo, M. Gerstein, and M. Snyder. 2002. Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae. Genes Dev. 16:3017-3033.
-
(2002)
Genes Dev.
, vol.16
, pp. 3017-3033
-
-
Horak, C.E.1
Luscombe, N.M.2
Qian, J.3
Bertone, P.4
Piccirrillo, S.5
Gerstein, M.6
Snyder, M.7
-
40
-
-
0034628901
-
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
-
Hughes, J. D., P. W. Estep, S. Tavazoie, and G. M. Church. 2000. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296: 1205-1214.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1205-1214
-
-
Hughes, J.D.1
Estep, P.W.2
Tavazoie, S.3
Church, G.M.4
-
41
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
Hughes, T. R., M. J. Marton, A. R. Jones, C. J. Roberts, R. Stoughton, C. D. Armour, H. A. Bennett, E. Coffey, H. Dal, Y. D. He, M. J. Kidd, A. M. King, M. R. Meyer, D. Slade, P. Y. Lum, S. B. Stepaniants, D. D. Shoemaker, D. Gachotte, K. Chakraburtry, J. Simon, M. Bard, and S. H. Friend. 2000. Functional discovery via a compendium of expression profiles. Cell 102: 109-126.
-
(2000)
Cell
, vol.102
, pp. 109-126
-
-
Hughes, T.R.1
Marton, M.J.2
Jones, A.R.3
Roberts, C.J.4
Stoughton, R.5
Armour, C.D.6
Bennett, H.A.7
Coffey, E.8
Dal, H.9
He, Y.D.10
Kidd, M.J.11
King, A.M.12
Meyer, M.R.13
Slade, D.14
Lum, P.Y.15
Stepaniants, S.B.16
Shoemaker, D.D.17
Gachotte, D.18
Chakraburtry, K.19
Simon, J.20
Bard, M.21
Friend, S.H.22
more..
-
42
-
-
2442751863
-
Functional divergence between the half-sites of the DNA-binding sequence for the yeast transcriptional regulator Rap1p
-
Idrissi, F. Z., and B. Pina. 1999. Functional divergence between the half-sites of the DNA-binding sequence for the yeast transcriptional regulator Rap1p. Biochem. J. 341:477-482.
-
(1999)
Biochem. J.
, vol.341
, pp. 477-482
-
-
Idrissi, F.Z.1
Pina, B.2
-
43
-
-
23244467882
-
Rewiring of the yeast transcriptional network through the evolution of motif usage
-
Ihmels, J., S. Bergmann, M. Gerami-Nejad, I. Yanai, M. McClellan, J. Berman, and N. Barkai. 2005. Rewiring of the yeast transcriptional network through the evolution of motif usage. Science 309:938-940.
-
(2005)
Science
, vol.309
, pp. 938-940
-
-
Ihmels, J.1
Bergmann, S.2
Gerami-Nejad, M.3
Yanai, I.4
McClellan, M.5
Berman, J.6
Barkai, N.7
-
44
-
-
0036699526
-
Revealing modular organization in the yeast transcriptional network
-
Ihmels, J., G. Friedlander, S. Bergmann, O. Sarig, Y. Ziv, and N. Barkai. 2002. Revealing modular organization in the yeast transcriptional network. Nat. Genet. 31:370-377.
-
(2002)
Nat. Genet.
, vol.31
, pp. 370-377
-
-
Ihmels, J.1
Friedlander, G.2
Bergmann, S.3
Sarig, O.4
Ziv, Y.5
Barkai, N.6
-
45
-
-
0035945567
-
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
-
Iyer, V. R., C. E. Horak, C. S. Scafe, D. Botstein, M. Snyder, and P. O. Brown. 2001. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409:533-538.
-
(2001)
Nature
, vol.409
, pp. 533-538
-
-
Iyer, V.R.1
Horak, C.E.2
Scafe, C.S.3
Botstein, D.4
Snyder, M.5
Brown, P.O.6
-
46
-
-
4644284749
-
Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast
-
Jackson, J. S., Jr., S. S. Houshmandi, L. F. Lopez, and W. M. Olivas. 2004. Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast. RNA 10:1625-1636.
-
(2004)
RNA
, vol.10
, pp. 1625-1636
-
-
Jackson Jr., J.S.1
Houshmandi, S.S.2
Lopez, L.F.3
Olivas, W.M.4
-
47
-
-
0345286865
-
RPH1 and GIS1 are damage-responsive repressors of PHR1
-
Jang, Y. K., L. Wang, and G. B. Sancar. 1999. RPH1 and GIS1 are damage-responsive repressors of PHR1. Mol. Cell. Biol. 19:7630-7638.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 7630-7638
-
-
Jang, Y.K.1
Wang, L.2
Sancar, G.B.3
-
48
-
-
0035726333
-
MGA2 is involved in the low-oxygen response element-dependent hypoxic induction of genes in Saccharomyces cerevisiae
-
Jiang, Y., M. J. Vasconcelles, S. Wretzel, A. Light, C. E. Martin, and M. A. Goldberg. 2001. MGA2 is involved in the low-oxygen response element-dependent hypoxic induction of genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 21:6161-6169.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 6161-6169
-
-
Jiang, Y.1
Vasconcelles, M.J.2
Wretzel, S.3
Light, A.4
Martin, C.E.5
Goldberg, M.A.6
-
49
-
-
0037135134
-
Systematic identification of pathways that couple cell growth and division in yeast
-
Jorgensen, P., J. L. Nishikawa, B. J. Breitkreutz, and M. Tyers. 2002. Systematic identification of pathways that couple cell growth and division in yeast. Science 297:395-400.
-
(2002)
Science
, vol.297
, pp. 395-400
-
-
Jorgensen, P.1
Nishikawa, J.L.2
Breitkreutz, B.J.3
Tyers, M.4
-
50
-
-
0038349948
-
Sequencing and comparison of yeast species to identify genes and regulatory elements
-
Kellis, M., N. Patterson, M. Endrizzi, B. Birren, and E. S. Lander. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423:241-254.
-
(2003)
Nature
, vol.423
, pp. 241-254
-
-
Kellis, M.1
Patterson, N.2
Endrizzi, M.3
Birren, B.4
Lander, E.S.5
-
51
-
-
3042637749
-
Cbf1p is required for chromatin remodeling at promoter-proximal CACGTG motifs in yeast
-
Kent, N. A., S. M. Eibert, and J. Mellor. 2004. Cbf1p is required for chromatin remodeling at promoter-proximal CACGTG motifs in yeast. J. Biol. Chem. 279:27116-27123.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 27116-27123
-
-
Kent, N.A.1
Eibert, S.M.2
Mellor, J.3
-
52
-
-
0032899753
-
Structure of a HAP1-DNA complex reveals dramatically asymmetric DNA binding by a homodimeric protein
-
King, D. A., L. Zhang, L. Guarente, and R. Marmorstein. 1999. Structure of a HAP1-DNA complex reveals dramatically asymmetric DNA binding by a homodimeric protein. Nat. Struct. Biol. 6:64-71.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 64-71
-
-
King, D.A.1
Zhang, L.2
Guarente, L.3
Marmorstein, R.4
-
53
-
-
4244130653
-
Net synthesis of sterols in resting cells of Saccharomyces cerevisiae
-
Klein, H. P., N. R. Eaton, and J. C. Murphy. 1954. Net synthesis of sterols in resting cells of Saccharomyces cerevisiae. Biochim. Biophys. Acta 13:591.
-
(1954)
Biochim. Biophys. Acta
, vol.13
, pp. 591
-
-
Klein, H.P.1
Eaton, N.R.2
Murphy, J.C.3
-
54
-
-
18044365236
-
Combinatorial repression of the hypoxic genes of Saccharomyces cerevisiae by DNA binding proteins Rox1 and Mot3
-
Klinkenberg, L. G., T. A. Mennella, K. Luetkenhaus, and R. S. Zitomer. 2005. Combinatorial repression of the hypoxic genes of Saccharomyces cerevisiae by DNA binding proteins Rox1 and Mot3. Eukaryot. Cell 4:649-660.
-
(2005)
Eukaryot. Cell
, vol.4
, pp. 649-660
-
-
Klinkenberg, L.G.1
Mennella, T.A.2
Luetkenhaus, K.3
Zitomer, R.S.4
-
55
-
-
0029791262
-
The transcription factor Swi5 regulates expression of the cyclin kinase inhibitor p40SIC1
-
Knapp, D., L. Bhoite, D. J. Stillman, and K. Nasmyth. 1996. The transcription factor Swi5 regulates expression of the cyclin kinase inhibitor p40SIC1. Mol. Cell. Biol. 16:5701-5707.
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 5701-5707
-
-
Knapp, D.1
Bhoite, L.2
Stillman, D.J.3
Nasmyth, K.4
-
56
-
-
0036678847
-
Dissection of transient oxidative stress response in Saccharomyces cerevisiae by using DNA microarrays
-
Koerkamp, M. G., M. Rep, H. J. Bussemaker, G. P. Hardy, A. Mul, K. Piekarska, C. A. Szigyarto, J. M. De Mattos, and H. F. Tabak. 2002. Dissection of transient oxidative stress response in Saccharomyces cerevisiae by using DNA microarrays. Mol. Biol. Cell 13:2783-2794.
-
(2002)
Mol. Biol. Cell
, vol.13
, pp. 2783-2794
-
-
Koerkamp, M.G.1
Rep, M.2
Bussemaker, H.J.3
Hardy, G.P.4
Mul, A.5
Piekarska, K.6
Szigyarto, C.A.7
De Mattos, J.M.8
Tabak, H.F.9
-
57
-
-
0032052761
-
Oxygen sensing and the transcriptional regulation of oxygen-responsive genes in yeast
-
Kwast, K. E., P. V. Burke, and R. O. Poyton. 1998. Oxygen sensing and the transcriptional regulation of oxygen-responsive genes in yeast. J. Exp. Biol. 201:1177-1195.
-
(1998)
J. Exp. Biol.
, vol.201
, pp. 1177-1195
-
-
Kwast, K.E.1
Burke, P.V.2
Poyton, R.O.3
-
58
-
-
0036135461
-
Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: Functional role of Rox1 and other factors in mediating the anoxic response
-
Kwast, K. E., L. C. Lai, N. Menda, D. T. James III, S. Aref, and P. V. Burke. 2002. Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: functional role of Rox1 and other factors in mediating the anoxic response. J. Bacteriol. 184:250-265.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 250-265
-
-
Kwast, K.E.1
Lai, L.C.2
Menda, N.3
James III, D.T.4
Aref, S.5
Burke, P.V.6
-
59
-
-
0043288143
-
ACE2 is required for daughter cell-specific G1 delay in Saccharomyces cerevisiae
-
Laabs, T. L., D. D. Markwardt, M. G. Slattery, L. L. Newcomb, D. J. Stillman, and W. Heideman. 2003. ACE2 is required for daughter cell-specific G1 delay in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 100:10275-10280.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 10275-10280
-
-
Laabs, T.L.1
Markwardt, D.D.2
Slattery, M.G.3
Newcomb, L.L.4
Stillman, D.J.5
Heideman, W.6
-
60
-
-
0002634758
-
Tetrapyrrole and heme biosynthesis in the yeast Saccharomyces cerevisiae
-
H. A. Dailey (ed.). McGraw-Hill, New York, N.Y.
-
Labbe-Bois, R., and P. Labbe. 1990. Tetrapyrrole and heme biosynthesis in the yeast Saccharomyces cerevisiae, p. 235-285. In H. A. Dailey (ed.), Biosynthesis of heme and chlorophylls. McGraw-Hill, New York, N.Y.
-
(1990)
Biosynthesis of Heme and Chlorophylls
, pp. 235-285
-
-
Labbe-Bois, R.1
Labbe, P.2
-
61
-
-
18144415477
-
Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: Differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media
-
Lai, L. C., A. L. Kosorukoff, P. V. Burke, and K. E. Kwast. 2005. Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media. Mol. Cell. Biol. 25:4075-4091.
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 4075-4091
-
-
Lai, L.C.1
Kosorukoff, A.L.2
Burke, P.V.3
Kwast, K.E.4
-
62
-
-
0035910457
-
Alkaline response genes of Saccharomyces cerevisiae and their relationship to the RIM101 pathway
-
Lamb, T. M., W. Xu, A. Diamond, and A. P. Mitchell. 2001. Alkaline response genes of Saccharomyces cerevisiae and their relationship to the RIM101 pathway. J. Biol. Chem. 276:1850-1856.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 1850-1856
-
-
Lamb, T.M.1
Xu, W.2
Diamond, A.3
Mitchell, A.P.4
-
63
-
-
0036207991
-
New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system
-
Le Crom, S., F. Devaux, P. Marc, X. Zhang, W. S. Moye-Rowley, and C. Jacq. 2002. New insights into the pleiotropic drug resistance network from genome-wide characterization of the YRR1 transcription factor regulation system. Mol. Cell. Biol. 22:2642-2649.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 2642-2649
-
-
Le Crom, S.1
Devaux, F.2
Marc, P.3
Zhang, X.4
Moye-Rowley, W.S.5
Jacq, C.6
-
64
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee, T. I., N. J. Rinaldi, F. Robert, D. T. Odom, Z. Bar-Joseph, G. K. Gerber, N. M. Hannett, C. T. Harbison, C. M. Thompson, I. Simon, J. Zeitlinger, E. G. Jennings, H. L. Murray, D. B. Gordon, B. Ren, J. J. Wyrick, J. B. Tagne, T. L. Volkert, E. Fraenkel, D. K. Gifford, and R. A. Young. 2002. Transcriptional regulatory networks in Saccharomyces cerevisiae. Science 298:799-804.
-
(2002)
Science
, vol.298
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Gordon, D.B.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
65
-
-
0034934774
-
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
-
Lieb, J. D., X. Liu, D. Botstein, and P. O. Brown. 2001. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28:327-334.
-
(2001)
Nat. Genet.
, vol.28
, pp. 327-334
-
-
Lieb, J.D.1
Liu, X.2
Botstein, D.3
Brown, P.O.4
-
66
-
-
0029787496
-
ERA, a novel cis-acting element required for autoregulation and ethanol repression of PDC1 transcription in Saccharomyces cerevisiae
-
Liesen, T., C. P. Hollenberg, and J. J. Heinisch. 1996. ERA, a novel cis-acting element required for autoregulation and ethanol repression of PDC1 transcription in Saccharomyces cerevisiae. Mol. Microbiol. 21:621-632.
-
(1996)
Mol. Microbiol.
, vol.21
, pp. 621-632
-
-
Liesen, T.1
Hollenberg, C.P.2
Heinisch, J.J.3
-
67
-
-
0036324753
-
An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
-
Liu, X. S., D. L. Brutlag, and J. S. Liu. 2002. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. Nat. Biotechnol. 20:835-839.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 835-839
-
-
Liu, X.S.1
Brutlag, D.L.2
Liu, J.S.3
-
68
-
-
0028293916
-
Importance of a flanking AT-rich region in target site recognition by the GC box-binding zinc finger protein MIG1
-
Lundin, M., J. O. Nehlin, and H. Ronne. 1994. Importance of a flanking AT-rich region in target site recognition by the GC box-binding zinc finger protein MIG1. Mol. Cell. Biol. 14:1979-1985.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 1979-1985
-
-
Lundin, M.1
Nehlin, J.O.2
Ronne, H.3
-
69
-
-
1842782781
-
Metalloregulation of yeast membrane steroid receptor homologs
-
Lyons, T. J., N. Y. Villa, L. M. Regalla, B. R. Kupchak, A. Vagstad, and D. J. Eide. 2004. Metalloregulation of yeast membrane steroid receptor homologs. Proc. Natl. Acad. Sci. USA 101:5505-5511.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 5505-5511
-
-
Lyons, T.J.1
Villa, N.Y.2
Regalla, L.M.3
Kupchak, B.R.4
Vagstad, A.5
Eide, D.J.6
-
70
-
-
0030841865
-
Thioredoxin reductase-dependent inhibition of MCB cell cycle box activity in Saccharomyces cerevisiae
-
Machado, A. K., B. A. Morgan, and G. F. Merrill. 1997. Thioredoxin reductase-dependent inhibition of MCB cell cycle box activity in Saccharomyces cerevisiae. J. Biol. Chem. 272:17045-17054.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 17045-17054
-
-
Machado, A.K.1
Morgan, B.A.2
Merrill, G.F.3
-
72
-
-
0037144584
-
Convergence of the target of rapamycin and the Snf1 protein kinase pathways in the regulation of the subcellular localization of Msn2, a transcriptional activator of STRE (stress response element)-regulated genes
-
Mayordomo, I., F. Estruch, and P. Sanz. 2002. Convergence of the target of rapamycin and the Snf1 protein kinase pathways in the regulation of the subcellular localization of Msn2, a transcriptional activator of STRE (stress response element)-regulated genes. J. Biol. Chem. 277:35650-35656.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 35650-35656
-
-
Mayordomo, I.1
Estruch, F.2
Sanz, P.3
-
73
-
-
0000185136
-
The yeast transcription factor Mac1 binds to DNA in a modular fashion
-
McDaniels, C. P. J., L. T. Jensen, C. Srinivasan, D. R. Winge, and T. D. Tullius. 1999. The yeast transcription factor Mac1 binds to DNA in a modular fashion. J. Biol. Chem. 274:26962-26967.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 26962-26967
-
-
McDaniels, C.P.J.1
Jensen, L.T.2
Srinivasan, C.3
Winge, D.R.4
Tullius, T.D.5
-
74
-
-
0033111674
-
1H, 15N and 13C assignments of the DNA binding domain of transcription factor Mbp1 from S. cerevisiae in both its free and the DNA bound forms, and 1H assignments of the free DNA
-
McIntosh, P. B., I. A. Taylor, S. J. Smerdon, T. A. Frenkiel, and A. N. Lane. 1999. 1H, 15N and 13C assignments of the DNA binding domain of transcription factor Mbp1 from S. cerevisiae in both its free and the DNA bound forms, and 1H assignments of the free DNA. J. Biomol. NMR 13:397-398.
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 397-398
-
-
McIntosh, P.B.1
Taylor, I.A.2
Smerdon, S.J.3
Frenkiel, T.A.4
Lane, A.N.5
-
75
-
-
0035093803
-
Ability for anaerobic growth is not sufficient for development of the petite phenotype in Saccharomyces kluyveri
-
Moller, K., L. Olsson, and J. Piskur. 2001. Ability for anaerobic growth is not sufficient for development of the petite phenotype in Saccharomyces kluyveri. J. Bacteriol. 183:2485-2489.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 2485-2489
-
-
Moller, K.1
Olsson, L.2
Piskur, J.3
-
76
-
-
0028837558
-
Expression cloning of a zinc-finger cyclic AMP-response-element-binding protein
-
O'Brien, R. M., N. Halmi, P. E. Stromstedt, R. L. Printz, and D. K. Granner. 1995. Expression cloning of a zinc-finger cyclic AMP-response-element- binding protein. Biochem. J. 312:17-21.
-
(1995)
Biochem. J.
, vol.312
, pp. 17-21
-
-
O'Brien, R.M.1
Halmi, N.2
Stromstedt, P.E.3
Printz, R.L.4
Granner, D.K.5
-
77
-
-
0042357236
-
Regulation of the yeast DPP1-encoded diacylglycerol pyrophosphate phosphatase by transcription factor Gis1p
-
Oshiro, J., G. S. Han, W. M. Iwanyshyn, K. Conover, and G. M. Carman. 2003. Regulation of the yeast DPP1-encoded diacylglycerol pyrophosphate phosphatase by transcription factor Gis1p. J. Biol. Chem. 278:31495-31503.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 31495-31503
-
-
Oshiro, J.1
Han, G.S.2
Iwanyshyn, W.M.3
Conover, K.4
Carman, G.M.5
-
78
-
-
0031037911
-
Regulation of gene expression during meiosis in Saccharomyces cerevisiae: SPR3 is controlled by both ABFI and a new sporulation control element
-
Ozsarac, N., M. J. Straffon, H. E. Dalton, and I. W. Dawes. 1997. Regulation of gene expression during meiosis in Saccharomyces cerevisiae: SPR3 is controlled by both ABFI and a new sporulation control element. Mol. Cell. Biol. 17:1152-1159.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 1152-1159
-
-
Ozsarac, N.1
Straffon, M.J.2
Dalton, H.E.3
Dawes, I.W.4
-
79
-
-
0032964932
-
Dynamic responses of reserve carbohydrate metabolism under carbon and nitrogen limitations in Saccharomyces cerevisiae
-
Parrou, J. L., B. Enjalbert, L. Plourde, A. Bauche, B. Gonzalez, and J. Francois. 1999. Dynamic responses of reserve carbohydrate metabolism under carbon and nitrogen limitations in Saccharomyces cerevisiae. Yeast 15:191-203.
-
(1999)
Yeast
, vol.15
, pp. 191-203
-
-
Parrou, J.L.1
Enjalbert, B.2
Plourde, L.3
Bauche, A.4
Gonzalez, B.5
Francois, J.6
-
80
-
-
0030878249
-
Effects of various types of stress on the metabolism of reserve carbohydrates in Saccharomyces cerevisiae: Genetic evidence for a stress-induced recycling of glycogen and trehalose
-
Parrou, J. L., M. A. Teste, and J. Francois. 1997. Effects of various types of stress on the metabolism of reserve carbohydrates in Saccharomyces cerevisiae: genetic evidence for a stress-induced recycling of glycogen and trehalose. Microbiology 143:1891-1900.
-
(1997)
Microbiology
, vol.143
, pp. 1891-1900
-
-
Parrou, J.L.1
Teste, M.A.2
Francois, J.3
-
81
-
-
19444370807
-
Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response
-
Patil, C. K., H. Li, and P. Walter. 2004. Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response. PLoS Biol. 2:E246.
-
(2004)
PLoS Biol.
, vol.2
-
-
Patil, C.K.1
Li, H.2
Walter, P.3
-
82
-
-
0037020260
-
Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae
-
Piper, M. D., P. Daran-Lapujade, C. Bro, B. Regenberg, S. Knudsen, J. Nielsen, and J. T. Pronk. 2002. Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae. J. Biol. Chem. 277:37001-37008.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 37001-37008
-
-
Piper, M.D.1
Daran-Lapujade, P.2
Bro, C.3
Regenberg, B.4
Knudsen, S.5
Nielsen, J.6
Pronk, J.T.7
-
83
-
-
0035369530
-
Origin of the duplicated regions in the yeast genomes
-
Piskur, J. 2001. Origin of the duplicated regions in the yeast genomes. Trends Genet. 17:302-303.
-
(2001)
Trends Genet.
, vol.17
, pp. 302-303
-
-
Piskur, J.1
-
84
-
-
3242886892
-
Yeast genome sequencing: The power of comparative genomics
-
Piskur, J., and R. B. Langkjaer. 2004. Yeast genome sequencing: the power of comparative genomics. Mol. Microbiol. 53:381-389.
-
(2004)
Mol. Microbiol.
, vol.53
, pp. 381-389
-
-
Piskur, J.1
Langkjaer, R.B.2
-
85
-
-
0347135946
-
Whole-genome discovery of transcription factor binding sites by network-level conservation
-
Pritsker, M., Y. C. Liu, M. A. Beer, and S. Tavazoie. 2004. Whole-genome discovery of transcription factor binding sites by network-level conservation. Genome Res. 14:99-108.
-
(2004)
Genome Res.
, vol.14
, pp. 99-108
-
-
Pritsker, M.1
Liu, Y.C.2
Beer, M.A.3
Tavazoie, S.4
-
86
-
-
0030448870
-
Pyruvate metabolism in Saccharomyces cerevisiae
-
Pronk, J. T., S. H. Yde, and J. P. van Dijken. 1996. Pyruvate metabolism in Saccharomyces cerevisiae. Yeast 12:1607-1633.
-
(1996)
Yeast
, vol.12
, pp. 1607-1633
-
-
Pronk, J.T.1
Yde, S.H.2
Van Dijken, J.P.3
-
87
-
-
0033916138
-
The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress
-
Raitt, D. C., A. L. Johnson, A. M. Erkine, K. Makino, B. Morgan, D. S. Gross, and L. H. Johnston. 2000. The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress. Mol. Biol. Cell 11:2335-2347.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 2335-2347
-
-
Raitt, D.C.1
Johnson, A.L.2
Erkine, A.M.3
Makino, K.4
Morgan, B.5
Gross, D.S.6
Johnston, L.H.7
-
88
-
-
30044439884
-
A genomewide screen reveals a role of mitochondria in anaerobic uptake of sterols in yeast
-
Reiner, S., D. Micolod, G. Zellnig, and R. Schneiter. 2006. A genomewide screen reveals a role of mitochondria in anaerobic uptake of sterols in yeast. Mol. Biol. Cell 17:90-103.
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 90-103
-
-
Reiner, S.1
Micolod, D.2
Zellnig, G.3
Schneiter, R.4
-
89
-
-
0013203966
-
FunSpec: A web-based cluster interpreter for yeast
-
Robinson, M. D., J. Grigull, N. Mohammad, and T. R. Hughes. 2002. FunSpec: a web-based cluster interpreter for yeast. BMC Bioinform. 3:35.
-
(2002)
BMC Bioinform.
, vol.3
, pp. 35
-
-
Robinson, M.D.1
Grigull, J.2
Mohammad, N.3
Hughes, T.R.4
-
90
-
-
33644851218
-
Balance between transcription and RNA degradation is vital for Saccharomyces cerevisiae mitochondria: Reduced transcription rescues the phenotype of deficient RNA degradation
-
Rogowska, A. T., O. Puchta, A. M. Czarnecka, A. Kaniak, P. P. Stepien, and P. Golik. 2005. Balance between transcription and RNA degradation is vital for Saccharomyces cerevisiae mitochondria: reduced transcription rescues the phenotype of deficient RNA degradation. Mol. Biol. Cell 17:1184-1193.
-
(2005)
Mol. Biol. Cell
, vol.17
, pp. 1184-1193
-
-
Rogowska, A.T.1
Puchta, O.2
Czarnecka, A.M.3
Kaniak, A.4
Stepien, P.P.5
Golik, P.6
-
91
-
-
0142248154
-
Role of the non-respiratory pathways in the utilization of molecular oxygen by Saccharomyces cerevisiae
-
Rosenfeld, E., and B. Beauvoit. 2003. Role of the non-respiratory pathways in the utilization of molecular oxygen by Saccharomyces cerevisiae. Yeast 20:1115-1144.
-
(2003)
Yeast
, vol.20
, pp. 1115-1144
-
-
Rosenfeld, E.1
Beauvoit, B.2
-
92
-
-
1542605245
-
Transcriptional activators Cat8 and Sip4 discriminate between sequence variants of the carbon source-responsive promoter element in the yeast Saccharomyces cerevisiae
-
Roth, S., J. Kumme, and H. J. Schuller. 2004. Transcriptional activators Cat8 and Sip4 discriminate between sequence variants of the carbon source-responsive promoter element in the yeast Saccharomyces cerevisiae. Curr. Genet. 45:121-128.
-
(2004)
Curr. Genet.
, vol.45
, pp. 121-128
-
-
Roth, S.1
Kumme, J.2
Schuller, H.J.3
-
93
-
-
0032879798
-
Yeast genome evolution in the post-genome era
-
Seoighe, C., and K. H. Wolfe. 1999. Yeast genome evolution in the post-genome era. Curr. Opin. Microbiol. 2:548-554.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 548-554
-
-
Seoighe, C.1
Wolfe, K.H.2
-
94
-
-
0345305434
-
Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae
-
Sertil, O., R. Kapoor, B. D. Cohen, N. Abramova, and C. V. Lowry. 2003. Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae. Nucleic Acids Res. 31:5831-5837.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5831-5837
-
-
Sertil, O.1
Kapoor, R.2
Cohen, B.D.3
Abramova, N.4
Lowry, C.V.5
-
95
-
-
12144289449
-
Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae
-
Shakoury-Elizeh, M., J. Tiedeman, J. Rashford, T. Ferea, J. Demeter, E. Garcia, R. Reifes, P. O. Brown, D. Botstein, and C. C. Philpott. 2004. Transcriptional remodeling in response to iron deprivation in Saccharomyces cerevisiae. Mol. Biol. Cell 15:1233-1243.
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 1233-1243
-
-
Shakoury-Elizeh, M.1
Tiedeman, J.2
Rashford, J.3
Ferea, T.4
Demeter, J.5
Garcia, E.6
Reifes, R.7
Brown, P.O.8
Botstein, D.9
Philpott, C.C.10
-
96
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, P. T., G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein, and B. Futcher. 1998. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell 9:3273-3297.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
97
-
-
0028867670
-
Compilation and characteristics of dedicated transcription factors in Saccharomyces cerevisiae
-
Svetlov, V. V., and T. G. Cooper. 1995. Compilation and characteristics of dedicated transcription factors in Saccharomyces cerevisiae. Yeast 11:1439-1484.
-
(1995)
Yeast
, vol.11
, pp. 1439-1484
-
-
Svetlov, V.V.1
Cooper, T.G.2
-
98
-
-
0032762991
-
Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
-
ter Linde, J. J., H. Liang, R. W. Davis, H. Y. Steensma, J. P. van Dijken, and J. T. Pronk. 1999. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae. J. Bacteriol. 181: 7409-7413.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 7409-7413
-
-
Ter Linde, J.J.1
Liang, H.2
Davis, R.W.3
Steensma, H.Y.4
Van Dijken, J.P.5
Pronk, J.T.6
-
99
-
-
0036317761
-
A microarray-assisted screen for potential Hap1 and Rox1 target genes in Saccharomyces cerevisiae
-
ter Linde, J. J., and H. Y. Steensma. 2002. A microarray-assisted screen for potential Hap1 and Rox1 target genes in Saccharomyces cerevisiae. Yeast 19:825-840.
-
(2002)
Yeast
, vol.19
, pp. 825-840
-
-
Ter Linde, J.J.1
Steensma, H.Y.2
-
100
-
-
0346361873
-
Cellular differentiation in response to nutrient availability: The repressor of meiosis, Rme1p, positively regulates invasive growth in Saccharomyces cerevisiae
-
van Dyk, D., G. Hansson, I. S. Pretorius, and F. F. Bauer. 2003. Cellular differentiation in response to nutrient availability: the repressor of meiosis, Rme1p, positively regulates invasive growth in Saccharomyces cerevisiae. Genetics 165:1045-1058.
-
(2003)
Genetics
, vol.165
, pp. 1045-1058
-
-
Van Dyk, D.1
Hansson, G.2
Pretorius, I.S.3
Bauer, F.F.4
-
101
-
-
0034731822
-
A web site for the computational analysis of yeast regulatory sequences
-
van Helden, J., B. Andre, and J. Collado-Vides. 2000. A web site for the computational analysis of yeast regulatory sequences. Yeast 16:177-187.
-
(2000)
Yeast
, vol.16
, pp. 177-187
-
-
Van Helden, J.1
Andre, B.2
Collado-Vides, J.3
-
102
-
-
0035958072
-
Identification and characterization of a low oxygen response element involved in the hypoxic induction of a family of Saccharomyces cerevisiae genes. Implications for the conservation of oxygen sensing in eukaryotes
-
Vasconcelles, M. J., Y. Jiang, K. McDaid, L. Gilooly, S. Wretzel, D. L. Porter, C. E. Martin, and M. A. Goldberg. 2001. Identification and characterization of a low oxygen response element involved in the hypoxic induction of a family of Saccharomyces cerevisiae genes. Implications for the conservation of oxygen sensing in eukaryotes. J. Biol. Chem. 276:14374-14384.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 14374-14384
-
-
Vasconcelles, M.J.1
Jiang, Y.2
McDaid, K.3
Gilooly, L.4
Wretzel, S.5
Porter, D.L.6
Martin, C.E.7
Goldberg, M.A.8
-
103
-
-
0034810736
-
Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae
-
Vik, A., and J. Rine. 2001. Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae. Mol. Cell. Biol. 21:6395-6405.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 6395-6405
-
-
Vik, A.1
Rine, J.2
-
104
-
-
0030747268
-
NMR analysis of CYP1(HAP1) DNA binding domain-CYC1 upstream activation sequence interactions: Recognition of a CGG trinucleotide and of an additional thymine 5 bp downstream by the zinc cluster and the N-terminal extremity of the protein
-
Vuidepot, A. L., F. Bontems, M. Gervais, B. Guiard, E. Shechter, and J. Y. Lallemand. 1997. NMR analysis of CYP1(HAP1) DNA binding domain-CYC1 upstream activation sequence interactions: recognition of a CGG trinucleotide and of an additional thymine 5 bp downstream by the zinc cluster and the N-terminal extremity of the protein. Nucleic Acids Res. 25:3042-3050.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3042-3050
-
-
Vuidepot, A.L.1
Bontems, F.2
Gervais, M.3
Guiard, B.4
Shechter, E.5
Lallemand, J.Y.6
-
106
-
-
0037031860
-
Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast
-
Wilcox, L. J., D. A. Balderes, B. Wharton, A. H. Tinkelenberg, G. Rao, and S. L. Sturley. 2002. Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast. J. Biol. Chem. 277:32465-32472.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 32465-32472
-
-
Wilcox, L.J.1
Balderes, D.A.2
Wharton, B.3
Tinkelenberg, A.H.4
Rao, G.5
Sturley, S.L.6
-
107
-
-
15944376548
-
A statistical method for constructing transcriptional regulatory networks using gene expression and sequence data
-
Xing, B., and M. J. van der Laan. 2005. A statistical method for constructing transcriptional regulatory networks using gene expression and sequence data. J. Comput. Biol. 12:229-246.
-
(2005)
J. Comput. Biol.
, vol.12
, pp. 229-246
-
-
Xing, B.1
Van Der Laan, M.J.2
-
108
-
-
0038506725
-
Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8
-
Young, E. T., K. M. Dombek, C. Tachibana, and T. Ideker. 2003. Multiple pathways are co-regulated by the protein kinase Snf1 and the transcription factors Adr1 and Cat8. J. Biol. Chem. 278:26145-26158.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 26145-26158
-
-
Young, E.T.1
Dombek, K.M.2
Tachibana, C.3
Ideker, T.4
-
109
-
-
0032861774
-
SCPD: A promoter database of the yeast Saccharomyces cerevisiae
-
Zhu, J., and M. Q. Zhang. 1999. SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics 15:607-611.
-
(1999)
Bioinformatics
, vol.15
, pp. 607-611
-
-
Zhu, J.1
Zhang, M.Q.2
-
110
-
-
0026559542
-
Regulation of gene expression by oxygen in Saccharomyces cerevisiae
-
Zitomer, R. S., and C. V. Lowry. 1992. Regulation of gene expression by oxygen in Saccharomyces cerevisiae. Microbiol. Rev. 56:1-11.
-
(1992)
Microbiol. Rev.
, vol.56
, pp. 1-11
-
-
Zitomer, R.S.1
Lowry, C.V.2
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