Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae

Journal of Bacteriology

Volumn 181, Issue 24, 1999, Pages 7409-7413

  Ter Linde, J J M ^a   Liang, H ^b   Davis, R W ^b   Steensma, H Y ^a,c,d   Van Dijken, J P ^c   Pronk, J T ^c  

^a LEIDEN UNIVERSITY   (Netherlands)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^d LEIDEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

AEROBIC METABOLISM; ANAEROBIC METABOLISM; ARTICLE; CHEMOSTAT; FUNGUS GROWTH; GENETIC TRANSCRIPTION; GENOME; GROWTH RATE; NONHUMAN; OPEN READING FRAME; PH; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; TEMPERATURE DEPENDENCE;

SACCHAROMYCES CEREVISIAE;

EID: 0032762991     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.24.7409-7413.1999     Document Type: Article

References (30)

1. Andreasen, A. A., and T. J. B. Stier. 1953. Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium. J. Cell. Comp. Physiol. 41:23-26.
2. Andreasen, A. A., and T. J. B. Stier. 1954. Anaerobic nutrition of Saccharomyces cerevisiae. II. Unsaturated fatty acid requirement for growth in defined medium. J. Cell. Comp. Physiol. 43:271-281.
3. Baganz, F., A. Hayes, D. Marren, D. J. Gardner, and S. G. Oliver. 1997. Suitability of replacement markers tor functional analysis studies in Saccharomyces cerevisiae. Yeast 13:1563-1573.
4. Boles, E., P. de Jong-Gubbels, and J. T. Pronk. 1998. Identification and characterization of MAEI, the Saccharomyces cerevisiae structural gene encoding mitochondrial malic enzyme. J. Bacteriol. 180:2875-2882.
5. Burke, P. V., D. Raitt, L. A. Allen, E. A. Kellogg, and R. O. Poyton. 1997. Effects of oxygen concentration on the expression of cytochrome c and cytochrome c oxidase genes in yeast. J. Biol. Chem. 272:14705-14712.
6. Chu, S., J. L. DeRisi, M. Eisen, J. Mulholland, D. Botstein, P. O. Brown, and I. Herskowitz. 1998. The transcriptional program of sporulation in budding yeast. Science 282:699-705.
7. D'Amore, T. 1992. Improving yeast fermentation performance. J. Inst. Brew. 98:375-382.
8. Deckert, J., R. Perini, B. Balusubramanian, and R. S. Zitomer. 1995. Multiple elements and auto-repression regulate Roxl, a repressor of hypoxic genes in Saccharomyces cerevisiae. Genetics 139:1149-1158.
9. de Jong-Gubbels, P., P. Vanrolleghem, S. Heijnen, J. P. van Dijken, and J. T. Pronk. 1999. Regulation of carbon metabolism in chemostat cultures of Saccharomyces cerevisiae grown on mixtures of glucose and ethanol. Yeast 11:407-418.
10. DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686.
11. Diderich, J. A., M. Schepper, P. van Hoek, M. A. Luttik, J. P. van Dijken, J. T. Pronk, P. Klaassen, H. F. M. Boelens, J. M. Teixeira de Mattos, K. van Dam, and A. L. Kruckeberg. 1999. Glucose uptake kinetics and transcription of HXT genes in chemostat cultures of Saccharomyces cerevisiae. J. Biol. Chem. 274:15350-15359.
12. Gancedo, J. M, 1992. Carbon catabolite repression in yeast, Eur. J. Biochem. 206:297-313.
13. Goffeau, A., et al. 1997. The yeast genome directory. Nature 387(Suppl.):5-105.
14. Hauser, N. C., M. Vingron, M. Scheideler, B. Krems, K. Hellmuth, K.-D. Entian, and J. D. Hoheisel. 1998. Transcriptional profiling on all open reading frames of Saccharomyces cerevisiae. Yeast 14:1209-1221.
15. IMP Website. 1999. [Online.] http://wwwIMP.LeidenUniv.nl/~Yeast.
16. Klein, C. J. L., L. Olsson, and J. Nielsen. 1998. Glucose control in Saccharomyces cerevisiae: the role of MIG1 in metabolic functions. Microbiology 144:13-24.
17. Kwast, K. E., P. V. Burke, and R. O. Poyton. 1998. Oxygen sensing and the transcriptional regulation of oxygen-responsive genes in yeast. J. Exp. Biol. 201:1177-1195.
18. Ng, R., and J. Abelson. 1980. Isolation and sequence of the gene for actin in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 77:3912-3916.
19. Pennisi, E. 1996. From genes to genome biology. Science 272:1736-1738.
20. Pirt, S. J. 1975. Principles of microbe and cell cultivation. John Wiley & Sons, Inc., New York, N.Y.
21. Sierkstra, L. N., J. M. A. Verbakel, and C. T. Verrips. 1992. Analysis of transcription and translation of glycolytic enzymes in glucose-limited continuous cultures of Saccharomyces cerevisiae. J. Gen. Microbiol. 138:2559-2566.
22. Skoog, K., and B. Hahn-Hägerdal. 1988. Xylose fermentation. Enzyme Microbiol. Tcehnol. 10:66-80.
23. van den Berg, M. A., P. de Jong-Gubbels, C. J. Kortland, J. P. van Dijken, J. T. Pronk, and H. Y. Steensma. 1996. The two acetyl-coenzyme A synthetases of Saccharomyces cerevisiae differ with respect to kinetic properties and transcriptional regulation. J. Biol. Chem. 271:28953-28959.
24. van Dijken, J. P., E. van den Bosch, J. J. Hermans, L. Rodrigues de Miranda, and W. A. Scheffers. 1986. Alcoholic fermentation by "non-fermentative" yeasts. Yeast 2:123-127.
25. Verduyn, C., E. Postma, W. A. Scheffers, and J. P. van Dijken. 1990. Physiology of Saccharomyces cerevisiae in anaerobic glucose-limited chemostat cultures. Microbiol. Rev. 58:616-630.
26. Verduyn, C., E. Postma, W. A. Scheffers, and J. P. van Dijken. 1992. Effect of benzoic acid on metabolic fluxes in yeasts: a continuous-culture study on the regulation of respiration and alcoholic fermentation. Yeast 8:501-517.
27. Visser, W., W. A. Scheffers, W. H. Batenburg-van der Vegte, and J. P. van Dijken. 1990. Oxygen requirements of yeasts. Appl. Environ. Microbiol. 56:3785-3792.
28. Wenzel, T. J., A. W. R. H. Teunissen, and H. Y. Steensma. 1995. PDAI mRNA: a standard for quantitation of mRNA in Saccharomyces cerevisiae superior to ACTI mRNA. Nucleic Acids Res. 23:883-884.
29. Weusthuis, R. A., J. T. Pronk, P. J. A. van den Broek, and J. P. van Dijken. 1994. Chemostat cultivation as a tool for studies on sugar transport in yeasts. Microbiol. Rev. 58:616-630.
30. Wodicka, L., H. Dong, M. Mittmann, M.-H. Ho, and D. J. Lockhart. 1997. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat. Biotechnol. 15:1359-1367.