NMR analysis of CYP1(HAP1) DNA binding domain-CYC1 upstream activation sequence interactions: Recognition of a CGG trinucleotide and of an additional thymine 5 bp downstream by the zinc cluster and the N-terminal extremity of the protein

Nucleic Acids Research

Volumn 25, Issue 15, 1997, Pages 3042-3050

  Vuidepot, Anne Lise ^b   Bontems, François ^b   Gervais, Michel ^a   Guiard, Bernard ^a   Shechter, Evelyne ^a   Lallemand, Jean Yves ^b  

^a CENTRE DE GÉNÉTIQUE MOLÉCULAIRE   (France)

^b LABORATOIRE DE SYNTHÈSE ORGANIQUE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; DNA FRAGMENT; LYSINE; THYMINE; TRANSCRIPTION FACTOR; TRINUCLEOTIDE;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; DIMERIZATION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN DOMAIN; PROTEIN STRUCTURE; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; BINDING SITES; CYTOCHROME C GROUP; CYTOCHROMES C; DNA; DNA-BINDING PROTEINS; FUNGAL PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTONS; SACCHAROMYCES CEREVISIAE PROTEINS; THYMINE; TRANS-ACTIVATORS; TRINUCLEOTIDE REPEATS; ZINC;

EID: 0030747268     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.15.3042     Document Type: Article

References (35)

1. Verdière,J., Creusot,F. and Guerineau,M. (1985) Mol. Gen. Genet., 199, 524-526.
2. Creusot,F., Verdière,J., Gaisne,M. and Slonimski,P.P. (1988) J. Mol. Biol., 204, 263-276.
3. Pfeifer,K., Kim,K.S., Kogan,S. and Guarente,L. (1989) Cell, 56, 291-301.
4. Johnston,M. (1987) Microbiol. Rev., 51, 458-476.
5. Timmerman,J., Guiard,B., Shechter,E., Delsuc,M.-A., Lallemand,J.Y. and Gervais,M. (1994) Eur. J. Biochem., 225, 593-599.
6. Schjerling,P. and Holmberg,S. (1996) Nucleic Acids Res., 24, 4599-4607.
7. Marmorstein,R., Carey,M., Ptashne,M. and Harrison,S.C. (1992) Nature, 356, 408-414.
8. Marmorstein,R. and Harrison,S.C. (1994) Genes Dev., 8, 2504-2512.
9. Reece,R.J. and Ptashne,M. (1993) Science, 261, 909-911.
10. Giniger,E., Varnum,S.M. and Ptashne,M. (1985) Cell, 40, 767-774.
11. Roy,A., Exinger,F. and Losson,R. (1990) Mol. Cell. Biol., 10, 5257-5270.
12. Ha,M., Hellauer,K. and Turcotte,B. (1996) Nucleic Acids Res., 24, 1453-1459.
13. Zhang,L. and Guarente,L. (1994) Genes Dev., 8, 2110-2119.
14. Timmerman,J., Vuidepot,A.-L., Bontems,F., Lallemand,J.-Y., Gervais,M., Shechter,E. and Guiard,B. (1996) J. Mol. Biol., 259, 792-804.
15. Jeener,J., Meter,B.H., Bachmann,P. and Ernst,R.R. (1979) J. Chem. Phys., 71, 4546-4553.
16. Kumar,A., Ernst,R.R. and Wüthrich,K. (1980) Biochem. Biophys. Res. Commun., 95, 1-6.
17. Braunschweiler,L. and Ernst,R.R. (1983) J. Magn. Resonance, 53, 521-528.
18. Rance,M., Sørenson,O.W., Bodenhausen,G., Wagner,G., Ernst,R.R. and Wüthrich,K. Biochem. Biophys. Res. Commun., 117, 458-479.
19. Bax,A. and Davis,D.G. (1985) J. Magn. Resonance, 65, 355-360.
20. Piotto,M., Saudek,V. and Sklenar,V. (1992) J. Biomol. NMR, 2, 661-665.
21. Plateau,P. and Guéron,M. (1982) J. Am. Chem. Soc., 104, 7310-7311.
22. Szewczak,A.A., Kellog,G.W. and Moore,P.B. (1993) FEBS Lett., 327, 261-264.
23. Dhingra,M.M., Sarma,M.H., Gupta,G. and Sarma,R.H. (1983) J. Biomol. Struct. Dyn., 1, 417-428.
24. Delsuc,M.-A. (1989) In Skilling,J. (ed.), Entropy and Bayesian Methods. Kluwer, Dordrecht, The Netherlands, pp. 285-290.
25. Rouh,A., Delsuc,M.-A., Bertran,G. and Lallemand,J.-Y. (1993) J. Magn. Resonance Ser: A, 102, 357-359.
26. Brünger,A.T. (1988) X-PLOR Manual. Yale University Press, New Haven, CT.
27. Baleja,J.D., Marmorstein,R., Harrison,S.C. and Wagner,G. (1992) Nature, 356, 450-453.
28. Baleja,J.D., Mau,T. and Wagner,G. (1994) Biochemistry, 33, 3071-3078.
29. Wüthrich,K. (1986) NMR of Proteins and Nucleic Acids. John Wiley and Sons, New York, NY.
30. Turcotte,B. and Guarente,L. (1992) Genes Dev., 6, 2001-2009.
31. Liang,S.D., Marmorstein,R., Harrison,S.C. and Ptashne,M. (1996) Mol Cell biol., 16, 3773-3780.
32. Naît-Kaoudjt,R., Roy,W., Guiard,B. and Gervais,M. (1997) Eur. J. Biochem., 244, 301-309.
33. Pfeifer,K., Prezant,T. and Guarente,L. (1987) Cell, 49, 19-27.
34. Clarke,N.D. Beamer,L.J., Goldberg,H.R., Berkower,C. and Pabo,C.O. (1991) Science, 254, 267-270.
35. Ominchinski,J.G., Pedone,P.V., Felsenfeld,G., Gronenborn,A.M. and Clore,G.M. (1997) Nature Struct. Biol., 4, 122-132.