메뉴 건너뛰기




Volumn 25, Issue 10, 2005, Pages 4075-4091

Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: Differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media

Author keywords

[No Author keywords available]

Indexed keywords

GALACTOSE; GLUCOSE; HEMOPROTEIN; PROTEIN HAP1; PROTEIN MSN2; PROTEIN MSN4; PROTEIN ROX1; PROTEIN UPC2; REGULATOR PROTEIN; RIBOSOME RNA; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 18144415477     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.25.10.4075-4091.2005     Document Type: Article
Times cited : (71)

References (93)
  • 1
    • 0034954376 scopus 로고    scopus 로고
    • Aligning gene expression time series with time warping algorithms
    • Aach, J., and G. M. Church. 2001. Aligning gene expression time series with time warping algorithms. Bioinformatics 17:495-508.
    • (2001) Bioinformatics , vol.17 , pp. 495-508
    • Aach, J.1    Church, G.M.2
  • 2
    • 0035370872 scopus 로고    scopus 로고
    • Global gene expression during short-term ethanol stress in Saccharomyces cerevisiae
    • Alexandre, H., V. Ansanay-Galeote, S. Dequin, and B. Blondin. 2001. Global gene expression during short-term ethanol stress in Saccharomyces cerevisiae. FEBS Lett. 498:98-103.
    • (2001) FEBS Lett. , vol.498 , pp. 98-103
    • Alexandre, H.1    Ansanay-Galeote, V.2    Dequin, S.3    Blondin, B.4
  • 3
    • 0002587184 scopus 로고
    • Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium
    • Andreasen, A., and T. Stier. 1953. Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium. J. Cell. Comp. Physiol. 41:23-36.
    • (1953) J. Cell. Comp. Physiol. , vol.41 , pp. 23-36
    • Andreasen, A.1    Stier, T.2
  • 4
    • 0000493179 scopus 로고
    • Anaerobic nutrition of Saccharomyces cerevisiae. II. Unsaturated fatty acid requirement for growth in defined medium
    • Andreasen, A., and T. Stier. 1954. Anaerobic nutrition of Saccharomyces cerevisiae. II. Unsaturated fatty acid requirement for growth in defined medium. J. Cell. Comp. Physiol. 43:271-281.
    • (1954) J. Cell. Comp. Physiol. , vol.43 , pp. 271-281
    • Andreasen, A.1    Stier, T.2
  • 5
    • 0032693609 scopus 로고    scopus 로고
    • Identification and characterization of major lipid particle proteins of the yeast Saccharomyces cerevisiae
    • Athenstaedt, K., D. Zweytick, A. Jandrositz, S. D. Kohlwein, and G. Daum. 1999. Identification and characterization of major lipid particle proteins of the yeast Saccharomyces cerevisiae. J. Bacteriol. 181:6441-6448.
    • (1999) J. Bacteriol. , vol.181 , pp. 6441-6448
    • Athenstaedt, K.1    Zweytick, D.2    Jandrositz, A.3    Kohlwein, S.D.4    Daum, G.5
  • 6
    • 0033555685 scopus 로고    scopus 로고
    • Nim1-related kinases coordinate cell cycle progression with the organization of the peripheral cytoskeleton in yeast
    • Barrai, Y., M. Parra, S. Bidlingmaier, and M. Snyder. 1999. Nim1-related kinases coordinate cell cycle progression with the organization of the peripheral cytoskeleton in yeast. Genes Dev. 13:176-187.
    • (1999) Genes Dev. , vol.13 , pp. 176-187
    • Barrai, Y.1    Parra, M.2    Bidlingmaier, S.3    Snyder, M.4
  • 7
    • 0027215424 scopus 로고
    • Interactions between glucose metabolism and oxidative phosphorylations on respiratory-competent Saccharomyces cerevisiae cells
    • Beauvoit, B., M. Rigoulet, O. Bunoust, G. Raffard, P. Canioni, and B. Guerin. 1993. Interactions between glucose metabolism and oxidative phosphorylations on respiratory-competent Saccharomyces cerevisiae cells. Eur. J. Biochem. 214:163-172.
    • (1993) Eur. J. Biochem. , vol.214 , pp. 163-172
    • Beauvoit, B.1    Rigoulet, M.2    Bunoust, O.3    Raffard, G.4    Canioni, P.5    Guerin, B.6
  • 8
    • 0036271384 scopus 로고    scopus 로고
    • The yeast transcriptome in aerobic and hypoxic conditions: Effects of hap1, rox1, rox3 and srb10 deletions
    • Becerra, M., L. J. Lombardia-Ferreira, N. C. Hauser, J. D. Hoheisel, B. Tizon, and M. E. Cerdan. 2002. The yeast transcriptome in aerobic and hypoxic conditions: effects of hap1, rox1, rox3 and srb10 deletions. Mol. Microbiol. 43:545-555.
    • (2002) Mol. Microbiol. , vol.43 , pp. 545-555
    • Becerra, M.1    Lombardia-Ferreira, L.J.2    Hauser, N.C.3    Hoheisel, J.D.4    Tizon, B.5    Cerdan, M.E.6
  • 9
    • 0033540030 scopus 로고    scopus 로고
    • The TOR signaling pathway controls nuclear localization of nutrient-regulated transcription factors
    • Beck, T., and M. N. Hall. 1999. The TOR signaling pathway controls nuclear localization of nutrient-regulated transcription factors. Nature 402:689-692.
    • (1999) Nature , vol.402 , pp. 689-692
    • Beck, T.1    Hall, M.N.2
  • 10
    • 0031933909 scopus 로고    scopus 로고
    • A fermentor system for regulating oxygen at low concentrations in cultures of Saccharomyces cerevisiae
    • Burke, P. V., K. E. Kwast, F. Everts, and R. O. Poyton. 1998. A fermentor system for regulating oxygen at low concentrations in cultures of Saccharomyces cerevisiae. Appl. Environ. Microbiol. 64:1040-1044.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1040-1044
    • Burke, P.V.1    Kwast, K.E.2    Everts, F.3    Poyton, R.O.4
  • 11
    • 1842736551 scopus 로고    scopus 로고
    • A rapid filtration apparatus for harvesting cells under controlled conditions for use in genome-wide temporal profiling studies
    • Burke, P. V., L. C. Lai, and K. E. Kwast. 2004. A rapid filtration apparatus for harvesting cells under controlled conditions for use in genome-wide temporal profiling studies. Anal. Biochem. 328:29-34.
    • (2004) Anal. Biochem. , vol.328 , pp. 29-34
    • Burke, P.V.1    Lai, L.C.2    Kwast, K.E.3
  • 13
    • 0031887447 scopus 로고    scopus 로고
    • The transcriptional regulator Hap1p (Cyp1p) is essential for anaerobic or heme-deficient growth of Saccharomyces cerevisiae: Genetic and molecular characterization of an extragenic suppressor that encodes a WD repeat protein
    • Chantrel, Y., M. Gaisne, C. Lions, and J. Verdiere. 1998. The transcriptional regulator Hap1p (Cyp1p) is essential for anaerobic or heme-deficient growth of Saccharomyces cerevisiae: Genetic and molecular characterization of an extragenic suppressor that encodes a WD repeat protein. Genetics 148:559-569.
    • (1998) Genetics , vol.148 , pp. 559-569
    • Chantrel, Y.1    Gaisne, M.2    Lions, C.3    Verdiere, J.4
  • 14
    • 4644236078 scopus 로고    scopus 로고
    • Role of trehalose phosphate synthase and trehalose during hypoxia: From flies to mammals
    • Chen, Q., and G. G. Haddad. 2004. Role of trehalose phosphate synthase and trehalose during hypoxia: from flies to mammals. J. Exp. Biol. 207:3125-3129.
    • (2004) J. Exp. Biol. , vol.207 , pp. 3125-3129
    • Chen, Q.1    Haddad, G.G.2
  • 16
    • 0035253751 scopus 로고    scopus 로고
    • Induction and repression of DAN1 and the family of anaerobic mannoprotein genes in Saccharomyces cerevisiae occurs through a complex array of regulatory sites
    • Cohen, B. D., O. Sertil, N. E. Abramova, K. J. Davies, and C. V. Lowry. 2001. Induction and repression of DAN1 and the family of anaerobic mannoprotein genes in Saccharomyces cerevisiae occurs through a complex array of regulatory sites. Nucleic Acids Res. 29:799-808.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 799-808
    • Cohen, B.D.1    Sertil, O.2    Abramova, N.E.3    Davies, K.J.4    Lowry, C.V.5
  • 18
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 19
    • 0020564055 scopus 로고
    • Nucleotide pools of growing, synchronized and stressed cultures of Saccharomyces cerevisiae
    • Ditzelmuller, G., W. Wohrer, C. P. Kubicek, and M. Rohr. 1983. Nucleotide pools of growing, synchronized and stressed cultures of Saccharomyces cerevisiae. Arch. Microbiol. 135:63-67.
    • (1983) Arch. Microbiol. , vol.135 , pp. 63-67
    • Ditzelmuller, G.1    Wohrer, W.2    Kubicek, C.P.3    Rohr, M.4
  • 21
    • 0027253092 scopus 로고
    • Two homologous zinc finger genes identified by multicopy suppression in a SNF1 protein kinase mutant of Saccharomyces cerevisiae
    • Estruch, F., and M. Carlson. 1993. Two homologous zinc finger genes identified by multicopy suppression in a SNF1 protein kinase mutant of Saccharomyces cerevisiae. Mol. Cell. Biol. 13:3872-3881.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 3872-3881
    • Estruch, F.1    Carlson, M.2
  • 23
    • 0035161939 scopus 로고    scopus 로고
    • Reserve carbohydrates metabolism in the yeast Saccharomyces cerevisiae
    • Francois, J., and J. L. Parrou. 2001. Reserve carbohydrates metabolism in the yeast Saccharomyces cerevisiae. FEMS Microbiol. Rev. 25:125-145.
    • (2001) FEMS Microbiol. Rev. , vol.25 , pp. 125-145
    • Francois, J.1    Parrou, J.L.2
  • 24
    • 0037878077 scopus 로고    scopus 로고
    • The Kluyver effect revisited
    • Fukuhara, H. 2003. The Kluyver effect revisited. FEMS Yeast Res. 3:327-331.
    • (2003) FEMS Yeast Res. , vol.3 , pp. 327-331
    • Fukuhara, H.1
  • 25
    • 0036891750 scopus 로고    scopus 로고
    • The sensing of nutritional status and the relationship to filamentous growth in Saccharomyces cerevisiae
    • Gagiano, M., F. F. Bauer, and I. S. Pretorius. 2002. The sensing of nutritional status and the relationship to filamentous growth in Saccharomyces cerevisiae. FEMS Yeast Res. 2:433-470.
    • (2002) FEMS Yeast Res. , vol.2 , pp. 433-470
    • Gagiano, M.1    Bauer, F.F.2    Pretorius, I.S.3
  • 26
    • 0033828333 scopus 로고    scopus 로고
    • Hyperphosphorylation of Msn2p and Msn4p in response to heat shock and the diauxic shift is inhibited by cAMP in Saccharomyces cerevisiae
    • Garreau, H., R. N. Hasan, G. Renault, F. Estruch, E. Boy-Marcotte, and M. Jacquet. 2000. Hyperphosphorylation of Msn2p and Msn4p in response to heat shock and the diauxic shift is inhibited by cAMP in Saccharomyces cerevisiae. Microbiology 146:2113-2120.
    • (2000) Microbiology , vol.146 , pp. 2113-2120
    • Garreau, H.1    Hasan, R.N.2    Renault, G.3    Estruch, F.4    Boy-Marcotte, E.5    Jacquet, M.6
  • 27
    • 0035162698 scopus 로고    scopus 로고
    • Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p
    • Gasch, A. P., M. Huang, S. Metzner, D. Botstein, S. J. Elledge, and P. O. Brown. 2001. Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. Mol. Biol. Cell 12:2987-3003.
    • (2001) Mol. Biol. Cell , vol.12 , pp. 2987-3003
    • Gasch, A.P.1    Huang, M.2    Metzner, S.3    Botstein, D.4    Elledge, S.J.5    Brown, P.O.6
  • 29
    • 0036728274 scopus 로고    scopus 로고
    • The genomics of yeast responses to environmental stress and starvation
    • Gasch, A. P., and M. Werner-Washburne. 2002. The genomics of yeast responses to environmental stress and starvation. Funct. Integr. Genomics. 2:181-192.
    • (2002) Funct. Integr. Genomics , vol.2 , pp. 181-192
    • Gasch, A.P.1    Werner-Washburne, M.2
  • 31
    • 0032008126 scopus 로고    scopus 로고
    • Mitochondrial ribosomal proteins (MRPs) of yeast
    • Graack, H. R., and B. Wittmann-Liebold. 1998. Mitochondrial ribosomal proteins (MRPs) of yeast. Biochem. J. 329:433-448.
    • (1998) Biochem. J. , vol.329 , pp. 433-448
    • Graack, H.R.1    Wittmann-Liebold, B.2
  • 34
    • 0014246832 scopus 로고
    • On the regulation of nicotinic acid biosynthesis in Saccharomyces cerevisiae
    • Heilmann, H. D., and F. Lingens. 1968. On the regulation of nicotinic acid biosynthesis in Saccharomyces cerevisiae. Hoppe Seylers Z. Physiol. Chem. 349:231-236.
    • (1968) Hoppe Seylers Z. Physiol. Chem. , vol.349 , pp. 231-236
    • Heilmann, H.D.1    Lingens, F.2
  • 35
    • 0033009538 scopus 로고    scopus 로고
    • The protein kinase C-mediated MAP kinase pathway involved in the maintenance of cellular integrity in Saccharomyces cerevisiae
    • Heinisch, J. J., A. Lorberg, H. P. Schmitz, and J. J. Jacoby. 1999. The protein kinase C-mediated MAP kinase pathway involved in the maintenance of cellular integrity in Saccharomyces cerevisiae. Mol. Microbiol. 32:671-680.
    • (1999) Mol. Microbiol. , vol.32 , pp. 671-680
    • Heinisch, J.J.1    Lorberg, A.2    Schmitz, H.P.3    Jacoby, J.J.4
  • 36
    • 0348010307 scopus 로고    scopus 로고
    • A mechanism of oxygen sensing in yeast. Multiple oxygen-responsive steps in the heme biosynthetic pathway affect Hap1 activity
    • Hon, T., A. Dodd, R. Dirmeier, N. Gorman, P. R. Sinclair, L. Zhang, and R. O. Poyton. 2003. A mechanism of oxygen sensing in yeast. Multiple oxygen-responsive steps in the heme biosynthetic pathway affect Hap1 activity. J. Biol. Chem. 278:50771-50780.
    • (2003) J. Biol. Chem. , vol.278 , pp. 50771-50780
    • Hon, T.1    Dodd, A.2    Dirmeier, R.3    Gorman, N.4    Sinclair, P.R.5    Zhang, L.6    Poyton, R.O.7
  • 37
    • 0036270889 scopus 로고    scopus 로고
    • ChIP-chip: A genomic approach for identifying transcription factor binding sites
    • Horak, C. E., and M. Snyder. 2002. ChIP-chip: a genomic approach for identifying transcription factor binding sites. Methods Enzymol. 350:469-483.
    • (2002) Methods Enzymol. , vol.350 , pp. 469-483
    • Horak, C.E.1    Snyder, M.2
  • 38
    • 0034628901 scopus 로고    scopus 로고
    • Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    • Hughes, J. D., P. W. Estep, S. Tavazoie, and G. M. Church. 2000. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol. 296:1205-1214.
    • (2000) J. Mol. Biol. , vol.296 , pp. 1205-1214
    • Hughes, J.D.1    Estep, P.W.2    Tavazoie, S.3    Church, G.M.4
  • 40
    • 0035945567 scopus 로고    scopus 로고
    • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
    • Iyer, V. R., C. E. Horak, C. S. Scafe, D. Botstein, M. Snyder, and P. O. Brown. 2001. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409:533-538.
    • (2001) Nature , vol.409 , pp. 533-538
    • Iyer, V.R.1    Horak, C.E.2    Scafe, C.S.3    Botstein, D.4    Snyder, M.5    Brown, P.O.6
  • 41
    • 0038612842 scopus 로고    scopus 로고
    • Oscillatory nucleocytoplasmic shuttling of the general stress response transcriptional activators Msn2 and Msn4 in Saccharomyces cerevisiae
    • Jacquet, M., G. Renault, S. Lallet, J. De Mey, and A. Goldbeter. 2003. Oscillatory nucleocytoplasmic shuttling of the general stress response transcriptional activators Msn2 and Msn4 in Saccharomyces cerevisiae. J. Cell Biol. 161:497-505.
    • (2003) J. Cell Biol. , vol.161 , pp. 497-505
    • Jacquet, M.1    Renault, G.2    Lallet, S.3    De Mey, J.4    Goldbeter, A.5
  • 42
    • 0036302227 scopus 로고    scopus 로고
    • Regulation of Saccharomyces cerevisiae FET4 by oxygen and iron
    • Jensen, L. T., and V. C. Culotta. 2002. Regulation of Saccharomyces cerevisiae FET4 by oxygen and iron. J. Mol. Biol. 318:251-260.
    • (2002) J. Mol. Biol. , vol.318 , pp. 251-260
    • Jensen, L.T.1    Culotta, V.C.2
  • 43
    • 0037135134 scopus 로고    scopus 로고
    • Systematic identification of pathways that couple cell growth and division in yeast
    • Jorgensen, P., J. L. Nishikawa, B. J. Breitkreutz, and M. Tyers. 2002. Systematic identification of pathways that couple cell growth and division in yeast. Science 297:395-400.
    • (2002) Science , vol.297 , pp. 395-400
    • Jorgensen, P.1    Nishikawa, J.L.2    Breitkreutz, B.J.3    Tyers, M.4
  • 44
    • 5444256434 scopus 로고    scopus 로고
    • A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size
    • Jorgensen, P., I. Rupes, J. R. Sharom, L. Schneper, J. R. Broach, and M. Tyers. 2004. A dynamic transcriptional network communicates growth potential to ribosome synthesis and critical cell size. Genes Dev. 18:2491-2505.
    • (2004) Genes Dev. , vol.18 , pp. 2491-2505
    • Jorgensen, P.1    Rupes, I.2    Sharom, J.R.3    Schneper, L.4    Broach, J.R.5    Tyers, M.6
  • 45
    • 11944273348 scopus 로고
    • The protein kinase C-activated MAP kinase pathway of Saccharomyces cerevisiae mediates a novel aspect of the heat shock response
    • Kamada, Y., U. S. Jung, J. Piotrowski, and D. E. Levin. 1995. The protein kinase C-activated MAP kinase pathway of Saccharomyces cerevisiae mediates a novel aspect of the heat shock response. Genes Dev. 9:1559-1571.
    • (1995) Genes Dev. , vol.9 , pp. 1559-1571
    • Kamada, Y.1    Jung, U.S.2    Piotrowski, J.3    Levin, D.E.4
  • 46
    • 0037205475 scopus 로고    scopus 로고
    • Multiple regulatory roles of a novel Saccharomyces cerevisiae protein, encoded by YOL002c, in lipid and phosphate metabolism
    • Karpichev, I. V., L. Cornivelli, and G. M. Small. 2002. Multiple regulatory roles of a novel Saccharomyces cerevisiae protein, encoded by YOL002c, in lipid and phosphate metabolism. J. Biol. Chem. 277:19609-19617.
    • (2002) J. Biol. Chem. , vol.277 , pp. 19609-19617
    • Karpichev, I.V.1    Cornivelli, L.2    Small, G.M.3
  • 47
    • 0038349948 scopus 로고    scopus 로고
    • Sequencing and comparison of yeast species to identify genes and regulatory elements
    • Kellis, M., N. Patterson, M. Endrizzi, B. Birren, and E. S. Lander. 2003. Sequencing and comparison of yeast species to identify genes and regulatory elements. Nature 423:241-254.
    • (2003) Nature , vol.423 , pp. 241-254
    • Kellis, M.1    Patterson, N.2    Endrizzi, M.3    Birren, B.4    Lander, E.S.5
  • 48
    • 0026635664 scopus 로고
    • HAP1 and ROX1 form a regulatory pathway in the repression of HEM13 transcription in Saccharomyces cerevisiae
    • Keng, T. 1992. HAP1 and ROX1 form a regulatory pathway in the repression of HEM13 transcription in Saccharomyces cerevisiae. Mol. Cell. Biol. 12:2616-2623.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 2616-2623
    • Keng, T.1
  • 49
    • 0032947358 scopus 로고    scopus 로고
    • Structure of HAP1-18-DNA implicates direct allosteric effect of protein-DNA interactions on transcriptional activation
    • King, D. A., L. Zhang, L. Guarente, and R. Marmorstein. 1999. Structure of HAP1-18-DNA implicates direct allosteric effect of protein-DNA interactions on transcriptional activation. Nat. Struct. Biol. 6:22-27.
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 22-27
    • King, D.A.1    Zhang, L.2    Guarente, L.3    Marmorstein, R.4
  • 51
    • 0032052761 scopus 로고    scopus 로고
    • Oxygen sensing and the transcriptional regulation of oxygen-responsive genes in yeast
    • Kwast, K. E., P. V. Burke, and R. O. Poyton. 1998. Oxygen sensing and the transcriptional regulation of oxygen-responsive genes in yeast. J. Exp. Biol. 201:1177-1195.
    • (1998) J. Exp. Biol. , vol.201 , pp. 1177-1195
    • Kwast, K.E.1    Burke, P.V.2    Poyton, R.O.3
  • 52
    • 0036135461 scopus 로고    scopus 로고
    • Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: Functional role of Rox1 and other factors in mediating the anoxic response
    • Kwast, K. E., L.-C. Lai, N. Menda, D. T. James III, S. Aref, and P. V. Burke. 2002. Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: Functional role of Rox1 and other factors in mediating the anoxic response. J. Bacteriol. 184:250-265.
    • (2002) J. Bacteriol. , vol.184 , pp. 250-265
    • Kwast, K.E.1    Lai, L.-C.2    Menda, N.3    James III, D.T.4    Aref, S.5    Burke, P.V.6
  • 53
    • 0002634758 scopus 로고
    • Tetrapyrrole and heme biosynthesis in the yeast Saccharomyces cerevisiae
    • H. A. Dailey (ed.), McGraw-Hill, New York, N.Y.
    • Labbe-Bois, R., and P. Labbe. 1990. Tetrapyrrole and heme biosynthesis in the yeast Saccharomyces cerevisiae, p. 235-285. In H. A. Dailey (ed.), Biosynthesis of heme and chlorophylls. McGraw-Hill, New York, N.Y.
    • (1990) Biosynthesis of Heme and Chlorophylls , pp. 235-285
    • Labbe-Bois, R.1    Labbe, P.2
  • 54
    • 0041630927 scopus 로고    scopus 로고
    • Structural environment dictates the biological significance of heme-responsive motifs and the role of Hsp90 in the activation of the heme activator protein Hap1
    • Lee, H. C., T. Hon, C. Lan, and L. Zhang. 2003. Structural environment dictates the biological significance of heme-responsive motifs and the role of Hsp90 in the activation of the heme activator protein Hap1. Mol. Cell. Biol. 23:5857-5866.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 5857-5866
    • Lee, H.C.1    Hon, T.2    Lan, C.3    Zhang, L.4
  • 56
    • 0026511056 scopus 로고
    • Mutants in the S. cerevisiae PKC1 gene display a cell cycle-specific osmotic stability defect
    • Levin, D. E., and E. Bartlett-Heubusch. 1992. Mutants in the S. cerevisiae PKC1 gene display a cell cycle-specific osmotic stability defect. J. Cell Biol. 116:1221-1229.
    • (1992) J. Cell Biol. , vol.116 , pp. 1221-1229
    • Levin, D.E.1    Bartlett-Heubusch, E.2
  • 57
    • 0032575506 scopus 로고    scopus 로고
    • Defects in the yeast high affinity iron transport system result in increased metal sensitivity because of the increased expression of transporters with a broad transition metal specificity
    • Li, L., and J. Kaplan. 1998. Defects in the yeast high affinity iron transport system result in increased metal sensitivity because of the increased expression of transporters with a broad transition metal specificity. J. Biol. Chem. 273:22181-22187.
    • (1998) J. Biol. Chem. , vol.273 , pp. 22181-22187
    • Li, L.1    Kaplan, J.2
  • 59
    • 0030841865 scopus 로고    scopus 로고
    • Thioredoxin reductase-dependent inhibition of MCB cell cycle box activity in Saccharomyces cerevisiae
    • Machado, A. K., B. A. Morgan, and G. F. Merrill. 1997. Thioredoxin reductase-dependent inhibition of MCB cell cycle box activity in Saccharomyces cerevisiae. J. Biol. Chem. 272:17045-17054.
    • (1997) J. Biol. Chem. , vol.272 , pp. 17045-17054
    • Machado, A.K.1    Morgan, B.A.2    Merrill, G.F.3
  • 61
    • 0029879360 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE)
    • Martinez-Pastor, M. T., G. Marchler, C. Schuller, A. Marchler-Bauer, H. Ruis, and F. Estruch. 1996. The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). EMBO J. 15:2227-2235.
    • (1996) EMBO J. , vol.15 , pp. 2227-2235
    • Martinez-Pastor, M.T.1    Marchler, G.2    Schuller, C.3    Marchler-Bauer, A.4    Ruis, H.5    Estruch, F.6
  • 62
    • 0037144584 scopus 로고    scopus 로고
    • Convergence of the target of rapamycin and the Snf1 protein kinase pathways in the regulation of the subcellular localization of Msn2, a transcriptional activator of STRE (Stress Response Element)-regulated genes
    • Mayordomo, I., F. Estruch, and P. Sanz. 2002. Convergence of the target of rapamycin and the Snf1 protein kinase pathways in the regulation of the subcellular localization of Msn2, a transcriptional activator of STRE (Stress Response Element)-regulated genes. J. Biol. Chem. 277:35650-35656.
    • (2002) J. Biol. Chem. , vol.277 , pp. 35650-35656
    • Mayordomo, I.1    Estruch, F.2    Sanz, P.3
  • 63
    • 0035949539 scopus 로고    scopus 로고
    • Ubiquinone biosynthesis in microorganisms
    • Meganathan, R. 2001. Ubiquinone biosynthesis in microorganisms. FEMS Microbiol. Lett. 203:131-139.
    • (2001) FEMS Microbiol. Lett. , vol.203 , pp. 131-139
    • Meganathan, R.1
  • 64
    • 0031825456 scopus 로고    scopus 로고
    • A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements
    • Moskvina, E., C. Schuller, C. T. Maurer, W. H. Mager, and H. Ruis. 1998. A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements. Yeast 14:1041-1050.
    • (1998) Yeast , vol.14 , pp. 1041-1050
    • Moskvina, E.1    Schuller, C.2    Maurer, C.T.3    Mager, W.H.4    Ruis, H.5
  • 65
    • 0028917868 scopus 로고
    • Control of glucose influx into glycolysis and pleiotropic effects studied in different isogenic sets of Saccharomyces cerevisiae mutants in trehalose biosynthesis
    • Neves, M. J., S. Hohmann, W. Bell, F. Dumortier, K. Luyten, J. Ramos, P. Cobbaert, W. de Koning, Z. Kaneva, and J. M. Thevelein. 1995. Control of glucose influx into glycolysis and pleiotropic effects studied in different isogenic sets of Saccharomyces cerevisiae mutants in trehalose biosynthesis. Curr. Genet. 27:110-122.
    • (1995) Curr. Genet. , vol.27 , pp. 110-122
    • Neves, M.J.1    Hohmann, S.2    Bell, W.3    Dumortier, F.4    Luyten, K.5    Ramos, J.6    Cobbaert, P.7    De Koning, W.8    Kaneva, Z.9    Thevelein, J.M.10
  • 66
    • 0033532045 scopus 로고    scopus 로고
    • Protein kinase C enables the regulatory circuit that connects membrane synthesis to ribosome synthesis in Saccharomyces cerevisiae
    • Nierras, C. R., and J. R. Warner. 1999. Protein kinase C enables the regulatory circuit that connects membrane synthesis to ribosome synthesis in Saccharomyces cerevisiae. J. Biol. Chem. 274:13235-13241.
    • (1999) J. Biol. Chem. , vol.274 , pp. 13235-13241
    • Nierras, C.R.1    Warner, J.R.2
  • 67
    • 0032964932 scopus 로고    scopus 로고
    • Dynamic responses of reserve carbohydrate metabolism under carbon and nitrogen limitations in Saccharomyces cerevisiae
    • Parrou, J. L., B. Enjalbert, L. Plourde, A. Bauche, B. Gonzalez, and J. Francois. 1999. Dynamic responses of reserve carbohydrate metabolism under carbon and nitrogen limitations in Saccharomyces cerevisiae. Yeast 15:191-203.
    • (1999) Yeast , vol.15 , pp. 191-203
    • Parrou, J.L.1    Enjalbert, B.2    Plourde, L.3    Bauche, A.4    Gonzalez, B.5    Francois, J.6
  • 68
    • 0030878249 scopus 로고    scopus 로고
    • Effects of various types of stress on the metabolism of reserve carbohydrates in Saccharomyces cerevisiae: Genetic evidence for a stress-induced recycling of glycogen and trehalose
    • Parrou, J. L., M. A. Teste, and J. Francois. 1997. Effects of various types of stress on the metabolism of reserve carbohydrates in Saccharomyces cerevisiae: Genetic evidence for a stress-induced recycling of glycogen and trehalose. Microbiology 143:1891-1900.
    • (1997) Microbiology , vol.143 , pp. 1891-1900
    • Parrou, J.L.1    Teste, M.A.2    Francois, J.3
  • 69
    • 0037020260 scopus 로고    scopus 로고
    • Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae
    • Piper, M. D., P. Daran-Lapujade, C. Bro, B. Regenberg, S. Knudsen, J. Nielsen, and J. T. Pronk. 2002. Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae. J. Biol. Chem. 277:37001-37008.
    • (2002) J. Biol. Chem. , vol.277 , pp. 37001-37008
    • Piper, M.D.1    Daran-Lapujade, P.2    Bro, C.3    Regenberg, B.4    Knudsen, S.5    Nielsen, J.6    Pronk, J.T.7
  • 70
    • 0347135946 scopus 로고    scopus 로고
    • Whole-genome discovery of transcription factor binding sites by network-level conservation
    • Pritsker, M., Y. C. Liu, M. A. Beer, and S. Tavazoie. 2004. Whole-genome discovery of transcription factor binding sites by network-level conservation. Genome Res. 14:99-108.
    • (2004) Genome Res. , vol.14 , pp. 99-108
    • Pritsker, M.1    Liu, Y.C.2    Beer, M.A.3    Tavazoie, S.4
  • 71
    • 0034708436 scopus 로고    scopus 로고
    • The transcriptional response of Saccharomyces cerevisiae to osmotic shock. Hot1p and Msn2p/Msn4p are required for the induction of subsets of high osmolarity glycerol pathway-dependent genes
    • Rep, M., M. Krantz, J. M. Thevelein, and S. Hohmann. 2000. The transcriptional response of Saccharomyces cerevisiae to osmotic shock. Hot1p and Msn2p/Msn4p are required for the induction of subsets of high osmolarity glycerol pathway-dependent genes. J. Biol. Chem. 275:8290-8300.
    • (2000) J. Biol. Chem. , vol.275 , pp. 8290-8300
    • Rep, M.1    Krantz, M.2    Thevelein, J.M.3    Hohmann, S.4
  • 72
    • 0036850424 scopus 로고    scopus 로고
    • Non-respiratory oxygen consumption pathways in anaerobically grown Saccharomyces cerevisiae: Evidence and partial characterization
    • Rosenfeld, E., B. Beauvoit, M. Rigoulet, and J. M. Salmon. 2002. Non-respiratory oxygen consumption pathways in anaerobically grown Saccharomyces cerevisiae: evidence and partial characterization. Yeast 19:1299-1321.
    • (2002) Yeast , vol.19 , pp. 1299-1321
    • Rosenfeld, E.1    Beauvoit, B.2    Rigoulet, M.3    Salmon, J.M.4
  • 73
    • 0037020125 scopus 로고    scopus 로고
    • Coordinate regulation of sugar flux and translation by PAS kinase
    • Rutter, J., B. L. Probst, and S. L. McKnight. 2002. Coordinate regulation of sugar flux and translation by PAS kinase. Cell 111:17-28.
    • (2002) Cell , vol.111 , pp. 17-28
    • Rutter, J.1    Probst, B.L.2    McKnight, S.L.3
  • 74
    • 0030003064 scopus 로고    scopus 로고
    • Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae
    • Schmitt, A. P., and K. McEntee. 1996. Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 93:5777-5782.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 5777-5782
    • Schmitt, A.P.1    McEntee, K.2
  • 75
    • 0345305434 scopus 로고    scopus 로고
    • Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae
    • Sertil, O., R. Kapoor, B. D. Cohen, N. Abramova, and C. V. Lowry. 2003. Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae. Nucleic Acids Res. 31:5831-5837.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5831-5837
    • Sertil, O.1    Kapoor, R.2    Cohen, B.D.3    Abramova, N.4    Lowry, C.V.5
  • 76
    • 0034708703 scopus 로고    scopus 로고
    • Sterol metabolism and ERG2 gene regulation in the yeast Saccharomyces cerevisiae
    • Soustre, I., P. H. Dupuy, S. Silve, F. Karst, and G. Loison. 2000. Sterol metabolism and ERG2 gene regulation in the yeast Saccharomyces cerevisiae. FEBS Lett. 470:102-106.
    • (2000) FEBS Lett. , vol.470 , pp. 102-106
    • Soustre, I.1    Dupuy, P.H.2    Silve, S.3    Karst, F.4    Loison, G.5
  • 77
    • 0028867670 scopus 로고
    • Compilation and characteristics of dedicated transcription factors in Saccharomyces cerevisiae
    • Svetlov, V. V., and T. G. Cooper. 1995. Compilation and characteristics of dedicated transcription factors in Saccharomyces cerevisiae. Yeast 11:1439-1484.
    • (1995) Yeast , vol.11 , pp. 1439-1484
    • Svetlov, V.V.1    Cooper, T.G.2
  • 78
    • 0032762991 scopus 로고    scopus 로고
    • Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
    • ter Linde, J. J., H. Liang, R. W. Davis, H. Y. Steensma, J. P. van Dijken, and J. T. Pronk. 1999. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae. J. Bacteriol. 181:7409-7413.
    • (1999) J. Bacteriol. , vol.181 , pp. 7409-7413
    • Ter Linde, J.J.1    Liang, H.2    Davis, R.W.3    Steensma, H.Y.4    Van Dijken, J.P.5    Pronk, J.T.6
  • 79
    • 0036317761 scopus 로고    scopus 로고
    • A microarray-assisted screen for potential Hap1 and Rox1 target genes in Saccharomyces cerevisiae
    • ter Linde, J. J., and H. Y. Steensma. 2002. A microarray-assisted screen for potential Hap1 and Rox1 target genes in Saccharomyces cerevisiae. Yeast 19:825-840.
    • (2002) Yeast , vol.19 , pp. 825-840
    • Ter Linde, J.J.1    Steensma, H.Y.2
  • 81
    • 0032835137 scopus 로고    scopus 로고
    • Novel sensing mechanisms and targets for the cAMP-protein kinase A pathway in the yeast Saccharomyces cerevisiae
    • Thevelein, J. M., and J. H. de Winde. 1999. Novel sensing mechanisms and targets for the cAMP-protein kinase A pathway in the yeast Saccharomyces cerevisiae. Mol. Microbiol. 33:904-918.
    • (1999) Mol. Microbiol. , vol.33 , pp. 904-918
    • Thevelein, J.M.1    De Winde, J.H.2
  • 82
    • 0028985536 scopus 로고
    • Trehalose synthase: Guard to the gate of glycolysis in yeast?
    • Thevelein, J. M., and S. Hohmann. 1995. Trehalose synthase: guard to the gate of glycolysis in yeast? Trends Biochem. Sci. 20:3-10.
    • (1995) Trends Biochem. Sci. , vol.20 , pp. 3-10
    • Thevelein, J.M.1    Hohmann, S.2
  • 83
    • 0021341176 scopus 로고
    • In vivo studies of pyridine nucleotide metabolism in Escherichia coli and Saccharomyces cerevisiae by carbon-13 NMR spectroscopy
    • Unkefer, C. J., and R. E. London. 1984. In vivo studies of pyridine nucleotide metabolism in Escherichia coli and Saccharomyces cerevisiae by carbon-13 NMR spectroscopy. J. Biol. Chem. 259:2311-2320.
    • (1984) J. Biol. Chem. , vol.259 , pp. 2311-2320
    • Unkefer, C.J.1    London, R.E.2
  • 84
    • 0034731822 scopus 로고    scopus 로고
    • A web site for the computational analysis of yeast regulatory sequences
    • van Helden, J., B. Andre, and J. Collado-Vides. 2000. A web site for the computational analysis of yeast regulatory sequences. Yeast 16:177-187.
    • (2000) Yeast , vol.16 , pp. 177-187
    • Van Helden, J.1    Andre, B.2    Collado-Vides, J.3
  • 85
    • 0034810736 scopus 로고    scopus 로고
    • Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae
    • Vik, A., and J. Rine. 2001. Upc2p and Ecm22p, dual regulators of sterol biosynthesis in Saccharomyces cerevisiae. Mol. Cell. Biol. 21:6395-6405.
    • (2001) Mol. Cell. Biol. , vol.21 , pp. 6395-6405
    • Vik, A.1    Rine, J.2
  • 86
    • 0030747268 scopus 로고    scopus 로고
    • NMR analysis of CYP1(HAP1) DNA binding domain-CYC1 upstream activation sequence interactions: Recognition of a CGG trinucleotide and of an additional thymine 5 bp downstream by the zinc cluster and the N-terminal extremity of the protein
    • Vuidepot, A. L., F. Bontems, M. Gervais, B. Guiard, E. Shechter, and J. Y. Lallemand. 1997. NMR analysis of CYP1(HAP1) DNA binding domain-CYC1 upstream activation sequence interactions: recognition of a CGG trinucleotide and of an additional thymine 5 bp downstream by the zinc cluster and the N-terminal extremity of the protein. Nucleic Acids Res. 25:3042-3050.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3042-3050
    • Vuidepot, A.L.1    Bontems, F.2    Gervais, M.3    Guiard, B.4    Shechter, E.5    Lallemand, J.Y.6
  • 87
    • 0037072773 scopus 로고    scopus 로고
    • Combinatorial control of yeast FET4 gene expression by iron, zinc, and oxygen
    • Waters, B. M., and D. J. Eide. 2002. Combinatorial control of yeast FET4 gene expression by iron, zinc, and oxygen. J. Biol. Chem. 277:33749-33757.
    • (2002) J. Biol. Chem. , vol.277 , pp. 33749-33757
    • Waters, B.M.1    Eide, D.J.2
  • 88
    • 0037031860 scopus 로고    scopus 로고
    • Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast
    • Wilcox, L. J., D. A. Balderes, B. Wharton, A. H. Tinkelenberg, G. Rao, and S. L. Sturley. 2002. Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast. J. Biol. Chem. 277:32466-32472.
    • (2002) J. Biol. Chem. , vol.277 , pp. 32466-32472
    • Wilcox, L.J.1    Balderes, D.A.2    Wharton, B.3    Tinkelenberg, A.H.4    Rao, G.5    Sturley, S.L.6
  • 89
    • 0037131560 scopus 로고    scopus 로고
    • Nutrient-regulated protein kinases in budding yeast
    • Wilson, W. A., and P. J. Roach. 2002. Nutrient-regulated protein kinases in budding yeast. Cell 111:155-158.
    • (2002) Cell , vol.111 , pp. 155-158
    • Wilson, W.A.1    Roach, P.J.2
  • 90
    • 0037667290 scopus 로고    scopus 로고
    • Clustering gene-expression data with repeated measurements
    • Yeung, K. Y., M. Medvedovic, and R. E. Bumgarner. 2003. Clustering gene-expression data with repeated measurements. Genome Biol. 4:R34.
    • (2003) Genome Biol. , vol.4
    • Yeung, K.Y.1    Medvedovic, M.2    Bumgarner, R.E.3
  • 91
    • 0033959218 scopus 로고    scopus 로고
    • Induction of neutral trehalase Nthl by heat and osmotic stress is controlled by STRE elements and Msn2/Msn4 transcription factors: Variations of PKA effect during stress and growth
    • Zahringer, H., J. M. Thevelein, and S. Nwaka. 2000. Induction of neutral trehalase Nthl by heat and osmotic stress is controlled by STRE elements and Msn2/Msn4 transcription factors: variations of PKA effect during stress and growth. Mol. Microbiol. 35:397-406.
    • (2000) Mol. Microbiol. , vol.35 , pp. 397-406
    • Zahringer, H.1    Thevelein, J.M.2    Nwaka, S.3
  • 92
    • 0032861774 scopus 로고    scopus 로고
    • SCPD: A promoter database of the yeast Saccharomyces cerevisiae
    • Zhu, J., and M. Q. Zhang. 1999. SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics 15:607-611.
    • (1999) Bioinformatics , vol.15 , pp. 607-611
    • Zhu, J.1    Zhang, M.Q.2
  • 93
    • 0026559542 scopus 로고
    • Regulation of gene expression by oxygen in Saccharomyces cerevisiae
    • Zitomer, R. S., and C. V. Lowry. 1992. Regulation of gene expression by oxygen in Saccharomyces cerevisiae. Microbiol. Rev. 56:1-11.
    • (1992) Microbiol. Rev. , vol.56 , pp. 1-11
    • Zitomer, R.S.1    Lowry, C.V.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.