-
1
-
-
0032922002
-
PhosphoBase, a database of phosphorylation sites: Release 2.0
-
Kreegipuu A, Blom N, Brunak S (1999) PhosphoBase, a database of phosphorylation sites: release 2.0. Nucleic Acids Res 27: 237-239.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 237-239
-
-
Kreegipuu, A.1
Blom, N.2
Brunak, S.3
-
2
-
-
0035413617
-
Chemical inhibitors of protein kinases
-
Bridges AJ (2001) Chemical inhibitors of protein kinases. Chem Rev 101: 2541-2571.
-
(2001)
Chem Rev
, vol.101
, pp. 2541-2571
-
-
Bridges, A.J.1
-
3
-
-
0035413607
-
Structural basis for control by phosphorylation
-
Johnson LN, Lewis RJ (2001) Structural basis for control by phosphorylation. Chem Rev 101: 2209-2242.
-
(2001)
Chem Rev
, vol.101
, pp. 2209-2242
-
-
Johnson, L.N.1
Lewis, R.J.2
-
4
-
-
0028032838
-
Structural determinants of substrate selection by the human insulin-receptor protein-yyrosine kinase
-
Keane NE, Chavanieu A, Quirk PG, Evans JS, Levine BA, et al. (1994) Structural determinants of substrate selection by the human insulin-receptor protein-yyrosine kinase. Eur J Biochem 226: 525-536.
-
(1994)
Eur J Biochem
, vol.226
, pp. 525-536
-
-
Keane, N.E.1
Chavanieu, A.2
Quirk, P.G.3
Evans, J.S.4
Levine, B.A.5
-
5
-
-
0029867420
-
Conformational effects of serine phosphorylation in phospholamban peptides
-
Quirk PG, Patchell VB, Colyer J, Drago GA, Gao Y (1996) Conformational effects of serine phosphorylation in phospholamban peptides. Eur J Biochem 236: 85-91.
-
(1996)
Eur J Biochem
, vol.236
, pp. 85-91
-
-
Quirk, P.G.1
Patchell, V.B.2
Colyer, J.3
Drago, G.A.4
Gao, Y.5
-
6
-
-
0029096432
-
Sequential phosphorylation of adjacent serine residues on the N-terminal region of cardiac troponin-I: Structure-activity implications of ordered phosphorylation
-
Quirk PG, Patchell VB, Gao Y, Levine BA, Perry SV (1995) Sequential phosphorylation of adjacent serine residues on the N-terminal region of cardiac troponin-I: Structure-activity implications of ordered phosphorylation. FEBS Lett 370: 175-178.
-
(1995)
FEBS Lett
, vol.370
, pp. 175-178
-
-
Quirk, P.G.1
Patchell, V.B.2
Gao, Y.3
Levine, B.A.4
Perry, S.V.5
-
7
-
-
0028067046
-
Phosphorylation effects on flanking charged residues: Structural implications for signal-transduction in protein-kinases
-
Chavanieu A, Keane NE, Quirk PG, Levine BA, Calas B, et al. (1994) Phosphorylation effects on flanking charged residues: Structural implications for signal-transduction in protein-kinases. Eur J Biochem 224: 115-123.
-
(1994)
Eur J Biochem
, vol.224
, pp. 115-123
-
-
Chavanieu, A.1
Keane, N.E.2
Quirk, P.G.3
Levine, B.A.4
Calas, B.5
-
8
-
-
0032906903
-
Direct effects of phosphorylation on the preferred backbone conformation of peptides: A nuclear magnetic resonance study
-
Tholey A, Lindemann A, Kinzel V, Reed J (1999) Direct effects of phosphorylation on the preferred backbone conformation of peptides: A nuclear magnetic resonance study. Biophys J 76: 76-87.
-
(1999)
Biophys J
, vol.76
, pp. 76-87
-
-
Tholey, A.1
Lindemann, A.2
Kinzel, V.3
Reed, J.4
-
9
-
-
0035830403
-
Influence of myristoylation, phosphorylation, and deamidation on the structural behavior of the N-terminus of the catalytic subunit of CAMP-dependent protein kinase
-
Tholey A, Pipkorn R, Bossemeyer D, Kinzel V, Reed J (2001) Influence of myristoylation, phosphorylation, and deamidation on the structural behavior of the N-terminus of the catalytic subunit of CAMP-dependent protein kinase. Biochemistry 40: 225-231.
-
(2001)
Biochemistry
, vol.40
, pp. 225-231
-
-
Tholey, A.1
Pipkorn, R.2
Bossemeyer, D.3
Kinzel, V.4
Reed, J.5
-
10
-
-
18044364263
-
Conformational analysis by NMR and molecular modelling of the 41-62 hydrophilic region of HIV-1 encoded virus protein U (Vpu). Effect of the phosphorylation on sites 52 and 56
-
Coadou G, Evrard-Todeschi N, Gharbi-Benarous J, Benarous R, Girault JP (2001) Conformational analysis by NMR and molecular modelling of the 41-62 hydrophilic region of HIV-1 encoded virus protein U (Vpu). Effect of the phosphorylation on sites 52 and 56. Comptes Rendus De L Academie Des Sciences Serie Ii Fascicule C-Chimie 4: 751-758.
-
(2001)
Comptes Rendus de L Academie des Sciences Serie Ii Fascicule C-Chimie
, vol.4
, pp. 751-758
-
-
Coadou, G.1
Evrard-Todeschi, N.2
Gharbi-Benarous, J.3
Benarous, R.4
Girault, J.P.5
-
11
-
-
0033609111
-
Physical evidence for a phosphorylation-dependent conformational change in the enhancer-binding protein NtrC
-
U S A
-
Hwang I, Thorgeirsson T, Lee J, Kustu S, Shin YK (1999) Physical evidence for a phosphorylation-dependent conformational change in the enhancer-binding protein NtrC. Proc Natl Acad U S A 96: 4880-4885.
-
(1999)
Proc Natl Acad
, vol.96
, pp. 4880-4885
-
-
Hwang, I.1
Thorgeirsson, T.2
Lee, J.3
Kustu, S.4
Shin, Y.K.5
-
12
-
-
0032979413
-
Phosphorylation stabilizes the N-termini of alpha-helices
-
Smart JL, McCammon JA (1999) Phosphorylation stabilizes the N-termini of alpha-helices. Biopolymers 49: 225-233.
-
(1999)
Biopolymers
, vol.49
, pp. 225-233
-
-
Smart, J.L.1
McCammon, J.A.2
-
13
-
-
0035913754
-
Atomistic Brownian dynamics simulation of peptide phosphorylation
-
Shen TY, Wong CF, McCammon JA (2001) Atomistic Brownian dynamics simulation of peptide phosphorylation. J Am Chem Soc 123: 9107-9111.
-
(2001)
J Am Chem Soc
, vol.123
, pp. 9107-9111
-
-
Shen, T.Y.1
Wong, C.F.2
McCammon, J.A.3
-
14
-
-
13644250683
-
Phosphorylation effects on cis/trans isomerization and the backbone conformation of serine-proline motifs: Accelerated molecular dynamics analysis
-
Hamelberg D, Shen T, McCammon JA (2005) Phosphorylation effects on cis/trans isomerization and the backbone conformation of serine-proline motifs: Accelerated molecular dynamics analysis. J Am Chem Soc 127: 1969-1974.
-
(2005)
J Am Chem Soc
, vol.127
, pp. 1969-1974
-
-
Hamelberg, D.1
Shen, T.2
McCammon, J.A.3
-
15
-
-
0000972810
-
Strength of solvent-exposed salt-bridges
-
Luo R, David L, Hung H, Devaney J, Gilson MK (1999) Strength of solvent-exposed salt-bridges. J Phys Chem B 103: 727-736.
-
(1999)
J Phys Chem B
, vol.103
, pp. 727-736
-
-
Luo, R.1
David, L.2
Hung, H.3
Devaney, J.4
Gilson, M.K.5
-
16
-
-
0032574755
-
Structural examination of the influence of phosphorylation on the binding of fibrinopeptide A to bovine thrombin
-
Maurer MC, Peng JL, An SS, Trosset JY, Henschen-Edman A, et al. (1998) Structural examination of the influence of phosphorylation on the binding of fibrinopeptide A to bovine thrombin. Biochemistry 37: 5888-5902.
-
(1998)
Biochemistry
, vol.37
, pp. 5888-5902
-
-
Maurer, M.C.1
Peng, J.L.2
An, S.S.3
Trosset, J.Y.4
Henschen-Edman, A.5
-
17
-
-
0032424250
-
How and why phosphotyrosine-containing peptides bind to the SH2 and PTB domains
-
Zhou Y, Abagyan R (1998) How and why phosphotyrosine-containing peptides bind to the SH2 and PTB domains. Fold Des 3: 513-522.
-
(1998)
Fold des
, vol.3
, pp. 513-522
-
-
Zhou, Y.1
Abagyan, R.2
-
18
-
-
0029860548
-
Structural characterization of the phosphotyrosine binding region of a high-affinity SH2 domain-phosphopeptide complex by molecular dynamics simulation and chemical shift calculations
-
Feng MH, Philippopoulos M, MacKerell AD, Lim C (1996) Structural characterization of the phosphotyrosine binding region of a high-affinity SH2 domain-phosphopeptide complex by molecular dynamics simulation and chemical shift calculations. J Am Chem Soc 118: 11265-11277.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 11265-11277
-
-
Feng, M.H.1
Philippopoulos, M.2
MacKerell, A.D.3
Lim, C.4
-
19
-
-
0037033036
-
Phosphorylation-induced conformational changes in a mitogen-activated protein kinase substrate. Implications for tyrosine hydroxylase activation
-
Stultz CM, Levin AD, Edelman ER (2002) Phosphorylation-induced conformational changes in a mitogen-activated protein kinase substrate. Implications for tyrosine hydroxylase activation. J Biol Chem 277: 47653-47661.
-
(2002)
J Biol Chem
, vol.277
, pp. 47653-47661
-
-
Stultz, C.M.1
Levin, A.D.2
Edelman, E.R.3
-
20
-
-
0036838326
-
Molecular dynamics of the FixJ receiver domain: Movement of the beta 4-alpha 4 loop correlates with the in and out flip of Phe101
-
Roche P, Mouawad L, Perahia D, Samama JP, Kahn D (2002) Molecular dynamics of the FixJ receiver domain: movement of the beta 4-alpha 4 loop correlates with the in and out flip of Phe101. Protein Sci 11: 2622-2630.
-
(2002)
Protein Sci
, vol.11
, pp. 2622-2630
-
-
Roche, P.1
Mouawad, L.2
Perahia, D.3
Samama, J.P.4
Kahn, D.5
-
21
-
-
0034026757
-
Molecular dynamics simulations of protein-tyrosine phosphatase 1B. II. Substrate-enzyme interactions and dynamics
-
Peters GH, Frimurer TM, Andersen JN, Olsen OH (2000) Molecular dynamics simulations of protein-tyrosine phosphatase 1B. II. Substrate-enzyme interactions and dynamics. Biophys J 78: 2191-2200.
-
(2000)
Biophys J
, vol.78
, pp. 2191-2200
-
-
Peters, G.H.1
Frimurer, T.M.2
Andersen, J.N.3
Olsen, O.H.4
-
22
-
-
0029619426
-
Solution structure of a band 3 peptide inhibitor bound to aldolase: A proposed mechanism for regulating binding by tyrosine phosphorylation
-
Schneider ML, Post CB (1995) Solution structure of a band 3 peptide inhibitor bound to aldolase: A proposed mechanism for regulating binding by tyrosine phosphorylation. Biochemistry 34: 16574-16584.
-
(1995)
Biochemistry
, vol.34
, pp. 16574-16584
-
-
Schneider, M.L.1
Post, C.B.2
-
23
-
-
0035224573
-
Theoretical models of catalytic domains of protein phosphatases 1 and 2A with Zn2+ and Mn2+ metal dications and putative bioligands in their catalytic centers
-
Wozniak-Celmer E, Oldziej S, Ciarkowski J (2001) Theoretical models of catalytic domains of protein phosphatases 1 and 2A with Zn2+ and Mn2+ metal dications and putative bioligands in their catalytic centers. Acta Biochim Pol 48: 35-52.
-
(2001)
Acta Biochim Pol
, vol.48
, pp. 35-52
-
-
Wozniak-Celmer, E.1
Oldziej, S.2
Ciarkowski, J.3
-
24
-
-
0037466314
-
Structural features of human initiation factor 4E, studied by X-ray crystal analyses and molecular dynamics simulations
-
Tomoo K, Shen X, Okabe K, Nozoe Y, Fukuhara S, et al. (2003) Structural features of human initiation factor 4E, studied by X-ray crystal analyses and molecular dynamics simulations. J Mol Biol 328: 365-383.
-
(2003)
J Mol Biol
, vol.328
, pp. 365-383
-
-
Tomoo, K.1
Shen, X.2
Okabe, K.3
Nozoe, Y.4
Fukuhara, S.5
-
25
-
-
0035815288
-
Dynamic coupling between the SH2 and SH3 domains of c-Src and hck underlies their inactivation by C-terminal tyrosine phosphorylation
-
Young MA, Gonfloni S, Superti-Furga G, Roux B, Kuriyan J (2001) Dynamic coupling between the SH2 and SH3 domains of c-Src and hck underlies their inactivation by C-terminal tyrosine phosphorylation. Cell 105: 115-126.
-
(2001)
Cell
, vol.105
, pp. 115-126
-
-
Young, M.A.1
Gonfloni, S.2
Superti-Furga, G.3
Roux, B.4
Kuriyan, J.5
-
26
-
-
0037732762
-
Solution conformation of the antibody-bound tyrosine phosphorylation site of the nicotinic acetylcholine receptor beta-subunit in its phosphorylated and nonphosphorylated states
-
Phan-Chan-Du A, Hemmerlin C, Krikorian D, Sakarellos-Daitsiotis M, Tsikaris V, et al. (2003) Solution conformation of the antibody-bound tyrosine phosphorylation site of the nicotinic acetylcholine receptor beta-subunit in its phosphorylated and nonphosphorylated states. Biochemistry 42: 7371-7380.
-
(2003)
Biochemistry
, vol.42
, pp. 7371-7380
-
-
Phan-Chan-Du, A.1
Hemmerlin, C.2
Krikorian, D.3
Sakarellos-Daitsiotis, M.4
Tsikaris, V.5
-
27
-
-
0037452980
-
The structure of the inter-SH2 domain of class IA phosphoinositide 3-kinase determined by site-directed spin labeling EPR and homology modeling
-
U S A
-
Fu Z, Aronoff-Spencer E, Backer JM, Gerfen GJ (2003) The structure of the inter-SH2 domain of class IA phosphoinositide 3-kinase determined by site-directed spin labeling EPR and homology modeling. Proc Natl Acad U S A 100: 3275-3280.
-
(2003)
Proc Natl Acad
, vol.100
, pp. 3275-3280
-
-
Fu, Z.1
Aronoff-Spencer, E.2
Backer, J.M.3
Gerfen, G.J.4
-
28
-
-
0043092653
-
Proteomic identification of 14-3-3zeta as a mitogen-activated protein kinase-activated protein kinase 2 substrate: Role in dimer formation and ligand binding
-
Powell DW, Rane MJ, Joughin BA, Kalmukova R, Hong JH, et al. (2003) Proteomic identification of 14-3-3zeta as a mitogen-activated protein kinase-activated protein kinase 2 substrate: Role in dimer formation and ligand binding. Mol Cell Biol 23: 5376-5387.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 5376-5387
-
-
Powell, D.W.1
Rane, M.J.2
Joughin, B.A.3
Kalmukova, R.4
Hong, J.H.5
-
29
-
-
4444336426
-
In silico activation of Src tyrosine kinase reveals the molecular basis for intramolecular autophosphorylation
-
Mendieta J, Gago F (2004) In silico activation of Src tyrosine kinase reveals the molecular basis for intramolecular autophosphorylation. J Mol Graph Model 23: 189-198.
-
(2004)
J Mol Graph Model
, vol.23
, pp. 189-198
-
-
Mendieta, J.1
Gago, F.2
-
30
-
-
2442667660
-
Activation and inhibition of cyclin-dependent kinase-2 by phosphorylation: A molecular dynamics study reveals the functional importance of the glycine-rich loop
-
Bartova I, Otyepka M, Kriz Z, Koca J (2004) Activation and inhibition of cyclin-dependent kinase-2 by phosphorylation: A molecular dynamics study reveals the functional importance of the glycine-rich loop. Protein Sci 13: 1449-1457.
-
(2004)
Protein Sci
, vol.13
, pp. 1449-1457
-
-
Bartova, I.1
Otyepka, M.2
Kriz, Z.3
Koca, J.4
-
31
-
-
0029731347
-
Phosphorylation events associated with different states of activation of a hepatic cardiolipin protease-activated protein kinase: Structural identity to the protein kinase N-type protein kinases
-
Peng B, Morrice NA, Groenen LC, Wettenhall REH (1996) Phosphorylation events associated with different states of activation of a hepatic cardiolipin protease-activated protein kinase: Structural identity to the protein kinase N-type protein kinases. J Biol Chem 271: 32233-32240.
-
(1996)
J Biol Chem
, vol.271
, pp. 32233-32240
-
-
Peng, B.1
Morrice, N.A.2
Groenen, L.C.3
Wettenhall, R.E.H.4
-
32
-
-
0035400394
-
Structural basis of oncogenic activation caused by point mutations in the kinase domain of the MET proto-oncogene: Modeling studies
-
Miller M, Ginalski K, Lesyng B, Nakaigawa N, Schmidt L, et al. (2001) Structural basis of oncogenic activation caused by point mutations in the kinase domain of the MET proto-oncogene: Modeling studies. Proteins 44: 32-43.
-
(2001)
Proteins
, vol.44
, pp. 32-43
-
-
Miller, M.1
Ginalski, K.2
Lesyng, B.3
Nakaigawa, N.4
Schmidt, L.5
-
33
-
-
2342500001
-
Protein modeling combined with spectroscopic techniques: An attractive quick alternative to obtain structural information
-
Kubala M, Obsil T, Obsilova V, Lansky Z, Amler E (2004) Protein modeling combined with spectroscopic techniques: An attractive quick alternative to obtain structural information. Physiol Res 53 (Suppl 1): S187-S197.
-
(2004)
Physiol Res
, vol.53
, Issue.1 SUPPL.
-
-
Kubala, M.1
Obsil, T.2
Obsilova, V.3
Lansky, Z.4
Amler, E.5
-
34
-
-
0031575408
-
Energetics of nucleophile activation in a protein tyrosine phosphatase
-
Hansson T, Nordlund P, Aqvist J (1997) Energetics of nucleophile activation in a protein tyrosine phosphatase. J Mol Biol 265: 118-127.
-
(1997)
J Mol Biol
, vol.265
, pp. 118-127
-
-
Hansson, T.1
Nordlund, P.2
Aqvist, J.3
-
35
-
-
0035235378
-
Ser133 phosphate-KIX interactions in the CREB-CBP complex: An ab initio molecular dynamics study
-
Dal Peraro M, Alber F, Carloni P (2001) Ser133 phosphate-KIX interactions in the CREB-CBP complex: An ab initio molecular dynamics study. Eur Biophys J 30: 75-81.
-
(2001)
Eur Biophys J
, vol.30
, pp. 75-81
-
-
Dal Peraro, M.1
Alber, F.2
Carloni, P.3
-
36
-
-
0037174865
-
Phosphorylation and mutations of Ser(16) in human phenylalanine hydroxylase - Kinetic and structural effects
-
Miranda FF, Teigen K, Thorolfsson M, Svebak RM, Knappskog PM, et al. (2002) Phosphorylation and mutations of Ser(16) in human phenylalanine hydroxylase - Kinetic and structural effects. J Biol Chem 277: 40937-40943.
-
(2002)
J Biol Chem
, vol.277
, pp. 40937-40943
-
-
Miranda, F.F.1
Teigen, K.2
Thorolfsson, M.3
Svebak, R.M.4
Knappskog, P.M.5
-
38
-
-
0036310711
-
On the role of the crystal environment in determining protein side-chain conformations
-
Jacobson MP, Friesner RA, Xiang ZX, Honig B (2002) On the role of the crystal environment in determining protein side-chain conformations. J Mol Biol 320: 597-608.
-
(2002)
J Mol Biol
, vol.320
, pp. 597-608
-
-
Jacobson, M.P.1
Friesner, R.A.2
Xiang, Z.X.3
Honig, B.4
-
40
-
-
1842532008
-
A hierarchical approach to all-atom protein loop prediction
-
Jacobson MP, Pincus DL, Rapp CS, Day TJ, Honig B, et al. (2004) A hierarchical approach to all-atom protein loop prediction. Proteins 55: 351-367.
-
(2004)
Proteins
, vol.55
, pp. 351-367
-
-
Jacobson, M.P.1
Pincus, D.L.2
Rapp, C.S.3
Day, T.J.4
Honig, B.5
-
41
-
-
1442277682
-
Computational modeling of the catalytic reaction in triose phosphate isomerase
-
Guallar V, Jacobson MP, McDermott A, Friesner RA (2004) Computational modeling of the catalytic reaction in triose phosphate isomerase. J Mol Biol 337: 227-239.
-
(2004)
J Mol Biol
, vol.337
, pp. 227-239
-
-
Guallar, V.1
Jacobson, M.P.2
McDermott, A.3
Friesner, R.A.4
-
42
-
-
1842584571
-
High-resolution prediction of protein helix positions and orientations
-
Li X, Jacobson MP, Friesner RA (2004) High-resolution prediction of protein helix positions and orientations. Proteins 55: 368-382.
-
(2004)
Proteins
, vol.55
, pp. 368-382
-
-
Li, X.1
Jacobson, M.P.2
Friesner, R.A.3
-
43
-
-
0035413616
-
Cyclin-dependent kinases
-
Harper JW, Adams PD (2001) Cyclin-dependent kinases. Chem Rev 101: 2511-2526.
-
(2001)
Chem Rev
, vol.101
, pp. 2511-2526
-
-
Harper, J.W.1
Adams, P.D.2
-
44
-
-
0029767016
-
Structural basis of cyclin-dependent kinase activation by phosphorylation
-
Russo AA, Jeffrey PD, Pavletich NP (1996) Structural basis of cyclin-dependent kinase activation by phosphorylation. Nat Struct Biol 3: 696-700.
-
(1996)
Nat Struct Biol
, vol.3
, pp. 696-700
-
-
Russo, A.A.1
Jeffrey, P.D.2
Pavletich, N.P.3
-
45
-
-
0033605643
-
Effects of phosphorylation of threonine 160 on cyclin-dependent kinase 2 structure and activity
-
Brown NR, Noble MEM, Lawrie AM, Morris MC, Tunnah P, et al. (1999) Effects of phosphorylation of threonine 160 on cyclin-dependent kinase 2 structure and activity. J Biol Chem 274: 8746-8756.
-
(1999)
J Biol Chem
, vol.274
, pp. 8746-8756
-
-
Brown, N.R.1
Noble, M.E.M.2
Lawrie, A.M.3
Morris, M.C.4
Tunnah, P.5
-
46
-
-
0035265679
-
Phosphoprotein-protein interactions revealed by the crystal structure of kinase-associated phosphatase in complex with phosphoCDK2
-
Song HW, Hanlon N, Brown NR, Noble MEM, Johnson LN, et al. (2001) Phosphoprotein-protein interactions revealed by the crystal structure of kinase-associated phosphatase in complex with phosphoCDK2. Mol Cell 7: 615-626.
-
(2001)
Mol Cell
, vol.7
, pp. 615-626
-
-
Song, H.W.1
Hanlon, N.2
Brown, N.R.3
Noble, M.E.M.4
Johnson, L.N.5
-
47
-
-
0027532449
-
Phosphorylation independent activation of human cyclin-dependent kinase 2 by cyclin A in vitro
-
Connell-Crowley L, Solomon MJ, Wei N, Harper JW (1993) Phosphorylation independent activation of human cyclin-dependent kinase 2 by cyclin A in vitro. Mol Biol Cell 4: 79-92.
-
(1993)
Mol Biol Cell
, vol.4
, pp. 79-92
-
-
Connell-Crowley, L.1
Solomon, M.J.2
Wei, N.3
Harper, J.W.4
-
48
-
-
0029029617
-
Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex
-
Jeffrey PD, Russo AA, Polyak K, Gibbs E, Hurwitz J, et al. (1995) Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex. Nature 376: 313-320.
-
(1995)
Nature
, vol.376
, pp. 313-320
-
-
Jeffrey, P.D.1
Russo, A.A.2
Polyak, K.3
Gibbs, E.4
Hurwitz, J.5
-
49
-
-
0037089017
-
The SGB/NP hydration free energy model based on the Surface Generalized Born solvent reaction field and novel nonpolar hydration free energy estimators
-
Gallicchio E, Zhang LY, Levy RM (2002) The SGB/NP hydration free energy model based on the Surface Generalized Born solvent reaction field and novel nonpolar hydration free energy estimators. J Comput Chem 23: 517-529.
-
(2002)
J Comput Chem
, vol.23
, pp. 517-529
-
-
Gallicchio, E.1
Zhang, L.Y.2
Levy, R.M.3
-
50
-
-
0001246294
-
Generalized Born model based on a surface integral formulation
-
Ghosh A, Rapp CS, Friesner RA (1998) Generalized Born model based on a surface integral formulation. J Phys Chem B 102: 10983-10990.
-
(1998)
J Phys Chem B
, vol.102
, pp. 10983-10990
-
-
Ghosh, A.1
Rapp, C.S.2
Friesner, R.A.3
-
51
-
-
2942568007
-
Key role of Ser562/661 in Snf1-dependent regulation of Cat8p in Saccharomyces cerevisiae and Kluyveromyces lactis
-
Charbon G, Breunig KD, Wattiez R, Vandenhaute J, Noel-Georis I (2004) Key role of Ser562/661 in Snf1-dependent regulation of Cat8p in Saccharomyces cerevisiae and Kluyveromyces lactis. Mol Cell Biol 24: 4083-4091.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 4083-4091
-
-
Charbon, G.1
Breunig, K.D.2
Wattiez, R.3
Vandenhaute, J.4
Noel-Georis, I.5
-
52
-
-
3142618052
-
Regulation of ubiquitin protein ligase activity in c-Cbl by phosphorylation-induced conformational change and constitutive activation by tyrosine to glutamate point mutations
-
Kassenbrock CK, Anderson SM (2004) Regulation of ubiquitin protein ligase activity in c-Cbl by phosphorylation-induced conformational change and constitutive activation by tyrosine to glutamate point mutations. J Biol Chem 279: 28017-28027.
-
(2004)
J Biol Chem
, vol.279
, pp. 28017-28027
-
-
Kassenbrock, C.K.1
Anderson, S.M.2
-
53
-
-
0028567874
-
Constitutive activation of Mek1 by mutation of serine phosphorylation sites
-
U S A
-
Huang W, Erikson RL (1994) Constitutive activation of Mek1 by mutation of serine phosphorylation sites. Proc Natl Acad Sci U S A 91: 8960-8963.
-
(1994)
Proc Natl Acad Sci
, vol.91
, pp. 8960-8963
-
-
Huang, W.1
Erikson, R.L.2
-
54
-
-
0027162310
-
Glutamate at the site of phosphorylation of nitrogen-regulatory protein NTRC mimics aspartyl-phosphate and activates the protein
-
Klose KE, Weiss DS, Kustu S (1993) Glutamate at the site of phosphorylation of nitrogen-regulatory protein NTRC mimics aspartyl-phosphate and activates the protein. J Mol Biol 232: 67-78.
-
(1993)
J Mol Biol
, vol.232
, pp. 67-78
-
-
Klose, K.E.1
Weiss, D.S.2
Kustu, S.3
-
55
-
-
0034054493
-
Enhanced electron flux and reduced calmodulin dissociation may explain "calcium-independent" eNOS activation by phosphorylation
-
McCabe TJ, Fulton D, Roman LJ, Sessa WC (2000) Enhanced electron flux and reduced calmodulin dissociation may explain "calcium-independent" eNOS activation by phosphorylation. J Biol Chem 275: 6123-6128.
-
(2000)
J Biol Chem
, vol.275
, pp. 6123-6128
-
-
McCabe, T.J.1
Fulton, D.2
Roman, L.J.3
Sessa, W.C.4
-
56
-
-
0036787760
-
Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins
-
Georgescu RE, Alexov EG, Gunner MR (2002) Combining conformational flexibility and continuum electrostatics for calculating pK(a)s in proteins. Biophys J 83: 1731-1748.
-
(2002)
Biophys J
, vol.83
, pp. 1731-1748
-
-
Georgescu, R.E.1
Alexov, E.G.2
Gunner, M.R.3
-
57
-
-
0033573063
-
Conformational changes induced by phosphorylation of the FixJ receiver domain
-
Birck C, Mourey L, Gouet P, Fabry B, Schumacher J, et al. (1999) Conformational changes induced by phosphorylation of the FixJ receiver domain. Structure Fold Des 7: 1505-1515.
-
(1999)
Structure Fold Des
, vol.7
, pp. 1505-1515
-
-
Birck, C.1
Mourey, L.2
Gouet, P.3
Fabry, B.4
Schumacher, J.5
-
58
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
59
-
-
0024290703
-
Structural changes in glycogen phosphorylase induced by phosphorylation
-
Sprang SR, Acharya KR, Goldsmith EJ, Stuart DI, Varvill K, et al. (1988) Structural changes in glycogen phosphorylase induced by phosphorylation. Nature 336: 215-221.
-
(1988)
Nature
, vol.336
, pp. 215-221
-
-
Sprang, S.R.1
Acharya, K.R.2
Goldsmith, E.J.3
Stuart, D.I.4
Varvill, K.5
-
60
-
-
0030766163
-
Crystal structure of the activated insulin receptor tyrosine kinase in complex with peptide substrate and ATP analog
-
Hubbard SR (1997) Crystal structure of the activated insulin receptor tyrosine kinase in complex with peptide substrate and ATP analog. EMBO J 16: 5572-5581.
-
(1997)
EMBO J
, vol.16
, pp. 5572-5581
-
-
Hubbard, S.R.1
-
61
-
-
0028582185
-
Crystal structure of the tyrosine kinase domain of the human insulin receptor
-
Hubbard SR, Wei L, Ellis L, Hendrickson WA (1994) Crystal structure of the tyrosine kinase domain of the human insulin receptor. Nature 372: 746-754.
-
(1994)
Nature
, vol.372
, pp. 746-754
-
-
Hubbard, S.R.1
Wei, L.2
Ellis, L.3
Hendrickson, W.A.4
-
62
-
-
0033572771
-
Structural transitions in the FixJ receiver domain
-
Gouet P, Fabry B, Guillet V, Birck C, Mourey L, et al. (1999) Structural transitions in the FixJ receiver domain. Structure Fold Des 7: 1517-1526.
-
(1999)
Structure Fold Des
, vol.7
, pp. 1517-1526
-
-
Gouet, P.1
Fabry, B.2
Guillet, V.3
Birck, C.4
Mourey, L.5
-
63
-
-
0035913529
-
Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
-
Kaminski GA, Friesner RA, Tirado-Rives J, Jorgensen WL (2001) Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides. J Phys Chem B 105: 6474-6487.
-
(2001)
J Phys Chem B
, vol.105
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
64
-
-
0029912748
-
Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids
-
Jorgensen WL, Maxwell DS, Tirado-Rives J (1996) Development and testing of the OPLS all-atom force field on conformational energetics and properties of organic liquids. J Am Chem Soc 118: 11225-11236.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 11225-11236
-
-
Jorgensen, W.L.1
Maxwell, D.S.2
Tirado-Rives, J.3
-
65
-
-
15744387842
-
Competition between intramolecular hydrogen bonds and solvation in phosphorylated peptides: Simulations with explicit and implicit solvent
-
Wong SE, Bernacki K, Jacobson M (2005) Competition between intramolecular hydrogen bonds and solvation in phosphorylated peptides: Simulations with explicit and implicit solvent. J Phys Chem B 109: 5249-5258.
-
(2005)
J Phys Chem B
, vol.109
, pp. 5249-5258
-
-
Wong, S.E.1
Bernacki, K.2
Jacobson, M.3
-
66
-
-
0347095360
-
-
Portland (Oregon): Schrodinger, L.L.C.
-
Schrodinger LLC (2002) Jaguar 5.0 [computer program]. Portland (Oregon): Schrodinger, L.L.C.
-
(2002)
Jaguar 5.0 [Computer Program]
-
-
-
67
-
-
0030180875
-
New model for calculation of solvation free energies: Correction of self-consistent reaction field continuum dielectric theory for short-range hydrogen-bonding effects
-
Marten B, Kim K, Cortis C, Friesner RA, Murphy RB, et al. (1996) New model for calculation of solvation free energies: Correction of self-consistent reaction field continuum dielectric theory for short-range hydrogen-bonding effects. J Phys Chem 100: 11775-11788.
-
(1996)
J Phys Chem
, vol.100
, pp. 11775-11788
-
-
Marten, B.1
Kim, K.2
Cortis, C.3
Friesner, R.A.4
Murphy, R.B.5
-
68
-
-
0000304948
-
Accurate first principles calculation of molecular charge distributions and solvation energies from ab initio quantum mechanics and continuum dielectric theory
-
Tannor DJ, Marten B, Murphy R, Friesner RA, Sitkoff D, et al. (1994) Accurate first principles calculation of molecular charge distributions and solvation energies from ab initio quantum mechanics and continuum dielectric theory. J Am Chem Soc 116: 11875-11882.
-
(1994)
J Am Chem Soc
, vol.116
, pp. 11875-11882
-
-
Tannor, D.J.1
Marten, B.2
Murphy, R.3
Friesner, R.A.4
Sitkoff, D.5
-
69
-
-
0027955787
-
Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins
-
Abagyan R, Totrov M (1994) Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins. J Mol Biol 235: 983-1002.
-
(1994)
J Mol Biol
, vol.235
, pp. 983-1002
-
-
Abagyan, R.1
Totrov, M.2
-
70
-
-
0023173201
-
Prediction of the folding of short polypeptide segments by uniform conformational sampling
-
Bruccoleri RE, Karplus M (1987) Prediction of the folding of short polypeptide segments by uniform conformational sampling. Biopolymers 26: 137-168.
-
(1987)
Biopolymers
, vol.26
, pp. 137-168
-
-
Bruccoleri, R.E.1
Karplus, M.2
-
71
-
-
0037375742
-
Ab initio construction of polypeptide fragments: Efficient generation of accurate, representative ensembles
-
DePristo MA, de Bakker PIW, Lovell SC, Blundell TL (2003) Ab initio construction of polypeptide fragments: Efficient generation of accurate, representative ensembles. Proteins 51: 41-55.
-
(2003)
Proteins
, vol.51
, pp. 41-55
-
-
DePristo, M.A.1
De Bakker, P.I.W.2
Lovell, S.C.3
Blundell, T.L.4
-
72
-
-
4444221565
-
UCSF Chimera - A visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, et al. (2004) UCSF Chimera - A visualization system for exploratory research and analysis. J Comput Chem 25: 1605-1612.
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
-
73
-
-
0034601916
-
The 1.9 A resolution structure of phospho-serine 46 HPr from Enterococcus faecalis
-
Audette GF, Engelmann R, Hengstenberg W, Deutscher J, Hayakawa K, et al. (2000) The 1.9 A resolution structure of phospho-serine 46 HPr from Enterococcus faecalis. J Mol Biol 303: 545-553.
-
(2000)
J Mol Biol
, vol.303
, pp. 545-553
-
-
Audette, G.F.1
Engelmann, R.2
Hengstenberg, W.3
Deutscher, J.4
Hayakawa, K.5
-
74
-
-
0028056155
-
The 1.6 A structure of histidine-containing phosphotransfer protein HPr from Streptococcus faecalis
-
Jia Z, Vandonselaar M, Hengstenberg W, Quail JW, Delbaere LT (1994) The 1.6 A structure of histidine-containing phosphotransfer protein HPr from Streptococcus faecalis. J Mol Biol 236: 1341-1355.
-
(1994)
J Mol Biol
, vol.236
, pp. 1341-1355
-
-
Jia, Z.1
Vandonselaar, M.2
Hengstenberg, W.3
Quail, J.W.4
Delbaere, L.T.5
-
75
-
-
0034939369
-
Structure of the Bacillus cell fate determinant SpoIIAA in phosphorylated and unphosphorylated forms
-
Seavers PR, Lewis RJ, Brannigan JA, Verschueren KH, Murshudov GN, et al. (2001) Structure of the Bacillus cell fate determinant SpoIIAA in phosphorylated and unphosphorylated forms. Structure 9: 605-614.
-
(2001)
Structure
, vol.9
, pp. 605-614
-
-
Seavers, P.R.1
Lewis, R.J.2
Brannigan, J.A.3
Verschueren, K.H.4
Murshudov, G.N.5
-
76
-
-
0035902464
-
BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: Structure of a BeF(3)(-) complex with phosphoserine phosphatase
-
U S A
-
Cho H, Wang W, Kim R, Yokota H, Damo S, et al. (2001) BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: Structure of a BeF(3)(-) complex with phosphoserine phosphatase. Proc Natl Acad Sci U S A 98: 8525-8530.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 8525-8530
-
-
Cho, H.1
Wang, W.2
Kim, R.3
Yokota, H.4
Damo, S.5
-
77
-
-
0036301579
-
Structural characterization of the reaction pathway in phosphoserine phosphatase: Crystallographic "snapshots" of intermediate states
-
Wang W, Cho HS, Kim R, Jancarik J, Yokota H, et al. (2002) Structural characterization of the reaction pathway in phosphoserine phosphatase: Crystallographic "snapshots" of intermediate states. J Mol Biol 319: 421-431.
-
(2002)
J Mol Biol
, vol.319
, pp. 421-431
-
-
Wang, W.1
Cho, H.S.2
Kim, R.3
Jancarik, J.4
Yokota, H.5
-
79
-
-
0028157664
-
Atomic structure of the MAP kinase ERK2 at 2.3 A resolution
-
Zhang F, Strand A, Robbins D, Cobb MH, Goldsmith EJ (1994) Atomic structure of the MAP kinase ERK2 at 2.3 A resolution. Nature 367: 704-711.
-
(1994)
Nature
, vol.367
, pp. 704-711
-
-
Zhang, F.1
Strand, A.2
Robbins, D.3
Cobb, M.H.4
Goldsmith, E.J.5
-
80
-
-
0033584875
-
Phosphorylated aspartate in the structure of a response regulator protein
-
Lewis RJ, Brannigan JA, Muchova K, Barak I, Wilkinson AJ (1999) Phosphorylated aspartate in the structure of a response regulator protein. J Mol Biol 294: 9-15.
-
(1999)
J Mol Biol
, vol.294
, pp. 9-15
-
-
Lewis, R.J.1
Brannigan, J.A.2
Muchova, K.3
Barak, I.4
Wilkinson, A.J.5
-
81
-
-
0036174748
-
Crystal structure of PMM/PGM: An enzyme in the biosynthetic pathway of P. aeruginosa virulence factors
-
Regni C, Tipton PA, Beamer LJ (2002) Crystal structure of PMM/PGM: An enzyme in the biosynthetic pathway of P. aeruginosa virulence factors. Structure 10: 269-279.
-
(2002)
Structure
, vol.10
, pp. 269-279
-
-
Regni, C.1
Tipton, P.A.2
Beamer, L.J.3
-
82
-
-
0033567706
-
The structure of phosphorylated p38gamma is monomeric and reveals a conserved activation-loop conformation
-
Bellon S, Fitzgibbon MJ, Fox T, Hsiao HM, Wilson KP (1999) The structure of phosphorylated p38gamma is monomeric and reveals a conserved activation-loop conformation. Structure Fold Des 7: 1057-1065.
-
(1999)
Structure Fold Des
, vol.7
, pp. 1057-1065
-
-
Bellon, S.1
Fitzgibbon, M.J.2
Fox, T.3
Hsiao, H.M.4
Wilson, K.P.5
-
83
-
-
0037008092
-
Caught in the act: The structure of phosphorylated beta-phosphoglucomutase from Lactococcus lactis
-
Lahiri SD, Zhang G, Dunaway-Mariano D, Allen KN (2002) Caught in the act: The structure of phosphorylated beta-phosphoglucomutase from Lactococcus lactis. Biochemistry 41: 8351-8359.
-
(2002)
Biochemistry
, vol.41
, pp. 8351-8359
-
-
Lahiri, S.D.1
Zhang, G.2
Dunaway-Mariano, D.3
Allen, K.N.4
-
84
-
-
16144364951
-
Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation
-
Yamaguchi H, Hendrickson WA (1996) Structural basis for activation of human lymphocyte kinase Lck upon tyrosine phosphorylation. Nature 384: 484-489.
-
(1996)
Nature
, vol.384
, pp. 484-489
-
-
Yamaguchi, H.1
Hendrickson, W.A.2
|