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Volumn 83, Issue 4, 2002, Pages 1731-1748

Combining conformational flexibility and continuum electrostatics for calculating pKas in proteins

Author keywords

[No Author keywords available]

Indexed keywords

ASPARAGINE; HYDROXYL GROUP; LYSOZYME; PROTEIN G; RIBONUCLEASE A; RIBONUCLEASE H; WATER;

EID: 0036787760     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(02)73940-4     Document Type: Article
Times cited : (410)

References (131)
  • 2
    • 0033614791 scopus 로고    scopus 로고
    • B in bacterial photosynthetic RCs
    • B in bacterial photosynthetic RCs. Biochemistry. 38:8253-8270.
    • (1999) Biochemistry , vol.38 , pp. 8253-8270
    • Alexov, E.1    Gunner, M.2
  • 4
    • 0030945495 scopus 로고    scopus 로고
    • Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties
    • Alexov, E. G., and M. R. Gunner. 1997. Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties. Biophys. J. 72:2075-2093.
    • (1997) Biophys. J. , vol.72 , pp. 2075-2093
    • Alexov, E.G.1    Gunner, M.R.2
  • 5
    • 0028305457 scopus 로고
    • Prediction of pH-dependent properties in proteins
    • Antosiewicz, J., J. A. McCammon, and M. K. Gilson. 1994. Prediction of pH-dependent properties in proteins. J. Mol. Biol. 238:415-436.
    • (1994) J. Mol. Biol. , vol.238 , pp. 415-436
    • Antosiewicz, J.1    McCammon, J.A.2    Gilson, M.K.3
  • 8
    • 0025197061 scopus 로고
    • a's of ionizable groups in proteins: Atomic detail from a continuum electrostatic model
    • a's of ionizable groups in proteins: atomic detail from a continuum electrostatic model. Biochemistry. 29:10219-10225.
    • (1990) Biochemistry , vol.29 , pp. 10219-10225
    • Bashford, D.1    Karplus, M.2
  • 9
    • 0026795399 scopus 로고
    • Determination of a high-quality nuclear magnetic resonance solution structure of the bovine pancreatic trypsin inhibitor and comparison with three crystal structures
    • Berndt, K. D., P. Guntert, L. P. Orbons, and K. Wuthrich. 1992. Determination of a high-quality nuclear magnetic resonance solution structure of the bovine pancreatic trypsin inhibitor and comparison with three crystal structures. J. Mol. Biol. 227:757-775.
    • (1992) J. Mol. Biol. , vol.227 , pp. 757-775
    • Berndt, K.D.1    Guntert, P.2    Orbons, L.P.3    Wuthrich, K.4
  • 10
    • 33748400070 scopus 로고    scopus 로고
    • Including side chain flexibility in continuum electrostatic calculations of protein titration
    • Beroza, P., and D. Case. 1996. Including side chain flexibility in continuum electrostatic calculations of protein titration. J. Phys. Chem. 100: 20156-20163.
    • (1996) J. Phys. Chem. , vol.100 , pp. 20156-20163
    • Beroza, P.1    Case, D.2
  • 11
    • 0026095641 scopus 로고
    • Protonation of interacting residues in a protein by a Monte Carlo method: Application to lysozyme and the photosynthetic reaction center of Rhodobacter sphaeroides
    • Beroza, P., D. R. Fredkin, M. Y. Okamura, and G. Feher. 1991. Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and the photosynthetic reaction center of Rhodobacter sphaeroides. Proc. Natl. Acad. Sci. U. S. A. 88:5804-5808.
    • (1991) Proc. Natl. Acad. Sci. U.S.A. , vol.88 , pp. 5804-5808
    • Beroza, P.1    Fredkin, D.R.2    Okamura, M.Y.3    Feher, G.4
  • 12
    • 84986452939 scopus 로고
    • The fast multipole boundary element method for molecular electrostatics: An optimal approach for large systems
    • Bharadwaj, R., A. Windemuth, S. Sridharan, B. Honig, and A. Nicholls. 1995. The fast multipole boundary element method for molecular electrostatics: an optimal approach for large systems. J. Comp. Chem. 16:898-913.
    • (1995) J. Comp. Chem. , vol.16 , pp. 898-913
    • Bharadwaj, R.1    Windemuth, A.2    Sridharan, S.3    Honig, B.4    Nicholls, A.5
  • 13
    • 0022801412 scopus 로고
    • X-ray crystal structure of the complex of human leukocyte elastase (PMN elastase) and the third domain of the turkey ovomucoid inhibitor
    • Bode, W., A. Z. Wei, R. Huber, E. Meyer, J. Travis, and S. Neumann. 1986. X-ray crystal structure of the complex of human leukocyte elastase (PMN elastase) and the third domain of the turkey ovomucoid inhibitor. EMBO J. 5:2453-2458.
    • (1986) EMBO J. , vol.5 , pp. 2453-2458
    • Bode, W.1    Wei, A.Z.2    Huber, R.3    Meyer, E.4    Travis, J.5    Neumann, S.6
  • 15
    • 0027133653 scopus 로고
    • Crystal structural analysis of mutations in the hydrophobic cores of barnase
    • Buckle, A. M., K. Henrick, and A. R. Fersht. 1993. Crystal structural analysis of mutations in the hydrophobic cores of barnase. J. Mol. Biol. 234:847-860.
    • (1993) J. Mol. Biol. , vol.234 , pp. 847-860
    • Buckle, A.M.1    Henrick, K.2    Fersht, A.R.3
  • 16
    • 0026044754 scopus 로고
    • Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopy
    • Bycroft, M., S. Ludvigsen, A. R. Fersht, and F. M. Poulsen. 1991. Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopy. Biochemistry. 30:8697-8701.
    • (1991) Biochemistry , vol.30 , pp. 8697-8701
    • Bycroft, M.1    Ludvigsen, S.2    Fersht, A.R.3    Poulsen, F.M.4
  • 19
    • 0015881868 scopus 로고
    • Nuclear magnetic resonance titration curves of histidine ring protons: IV. The effects of phosphate and sulfate on ribonuclease
    • Cohen, J. S., J. H. Griffin, and A. N. Schechter. 1973. Nuclear magnetic resonance titration curves of histidine ring protons: IV. The effects of phosphate and sulfate on ribonuclease. J. Biol. Chem. 248:4305-4310.
    • (1973) J. Biol. Chem. , vol.248 , pp. 4305-4310
    • Cohen, J.S.1    Griffin, J.H.2    Schechter, A.N.3
  • 20
    • 0034620544 scopus 로고    scopus 로고
    • Protonation states and pH titration in the photocycle of photoactive yellow protein
    • Demchuk, E., U. K. Genick, T. T. Woo, E. D. Getzoff, and D. Bashford. 2000. Protonation states and pH titration in the photocycle of photoactive yellow protein. Biochemistry. 39:1100-1113.
    • (2000) Biochemistry , vol.39 , pp. 1100-1113
    • Demchuk, E.1    Genick, U.K.2    Woo, T.T.3    Getzoff, E.D.4    Bashford, D.5
  • 21
    • 33748593093 scopus 로고    scopus 로고
    • a's of ionizable groups in protein
    • a's of ionizable groups in protein. J. Phys. Chem. 100:17373-17387.
    • (1996) J. Phys. Chem. , vol.100 , pp. 17373-17387
    • Demchuk, E.1    Wade, R.C.2
  • 22
    • 0034318309 scopus 로고    scopus 로고
    • Stabilization of charges and protonation states in the active site of the protein tyrosine phosphatases: A computational study
    • Dillet, V., R. L. Van Etten, and D. Bashford. 2000. Stabilization of charges and protonation states in the active site of the protein tyrosine phosphatases: a computational study. J. Phys. Chem. B. 104: 11321.1-11333.
    • (2000) J. Phys. Chem. B , vol.104 , pp. 11321-11333
    • Dillet, V.1    Van Etten, R.L.2    Bashford, D.3
  • 23
    • 0026059140 scopus 로고
    • Structure of domain 1 of rat T lymphocyte CD2 antigen
    • Driscoll, P. C., J. G. Cyster, I. D. Campbell, and A. F. Williams. 1991. Structure of domain 1 of rat T lymphocyte CD2 antigen. Nature. 353: 762-765.
    • (1991) Nature , vol.353 , pp. 762-765
    • Driscoll, P.C.1    Cyster, J.G.2    Campbell, I.D.3    Williams, A.F.4
  • 24
    • 1842326139 scopus 로고    scopus 로고
    • Bayesian statistical analysis of protein side-chain rotamer preferences
    • Dunbrack, R. L., and F. E. Cohen. 1997. Bayesian statistical analysis of protein side-chain rotamer preferences. Protein Sci. 6:1661-1681.
    • (1997) Protein Sci. , vol.6 , pp. 1661-1681
    • Dunbrack, R.L.1    Cohen, F.E.2
  • 25
    • 0028429178 scopus 로고
    • Conformational analysis of the backbone-dependent rotamer preferences of protein chains
    • Dunbrack, R. L., and M. Karplus. 1994. Conformational analysis of the backbone-dependent rotamer preferences of protein chains. Nat. Struct. Biol. 1:334-340.
    • (1994) Nat. Struct. Biol. , vol.1 , pp. 334-340
    • Dunbrack, R.L.1    Karplus, M.2
  • 26
    • 0031024788 scopus 로고    scopus 로고
    • Effects of buried charged groups on cysteine thiol ionization and reactivity in Escherichia coli thioredoxin: Structural and functional characterization of mutants of Asp 26 and Lys 57
    • Dyson, H. J., M. Jeng, L. L. Tennant, I. Slaby, M. Lindell, D. Cui, S. Kuprin, and A. Holmgren. 1997. Effects of buried charged groups on cysteine thiol ionization and reactivity in Escherichia coli thioredoxin: structural and functional characterization of mutants of Asp 26 and Lys 57. Biochemistry. 36:2622-2636.
    • (1997) Biochemistry , vol.36 , pp. 2622-2636
    • Dyson, H.J.1    Jeng, M.2    Tennant, L.L.3    Slaby, I.4    Lindell, M.5    Cui, D.6    Kuprin, S.7    Holmgren, A.8
  • 27
    • 0032563113 scopus 로고    scopus 로고
    • Electrostatic contributions to the stability of halophilic proteins
    • Elcock, A. H., and J. A. McCammon. 1998. Electrostatic contributions to the stability of halophilic proteins. J. Mol. Biol. 280:731-748.
    • (1998) J. Mol. Biol. , vol.280 , pp. 731-748
    • Elcock, A.H.1    McCammon, J.A.2
  • 28
    • 0000021902 scopus 로고    scopus 로고
    • Heme/copper terminal oxidases
    • Ferguson-Miller, S., and G. T. Babcock. 1996. Heme/copper terminal oxidases. Chem. Rev. 96:2889-2907.
    • (1996) Chem. Rev. , vol.96 , pp. 2889-2907
    • Ferguson-Miller, S.1    Babcock, G.T.2
  • 29
    • 0032537485 scopus 로고    scopus 로고
    • Theoretical and experimental analysis of ionization equilibria in ovomucoid third domain
    • Forsyth, W. R., M. K. Gilson, J. Antosiewicz, O. R. Jaren, and A. D. Robertson. 1998. Theoretical and experimental analysis of ionization equilibria in ovomucoid third domain. Biochemistry. 37:8643-8652.
    • (1998) Biochemistry , vol.37 , pp. 8643-8652
    • Forsyth, W.R.1    Gilson, M.K.2    Antosiewicz, J.3    Jaren, O.R.4    Robertson, A.D.5
  • 30
    • 0023198896 scopus 로고
    • Crystal and molecular structures of the complex of alpha-chymotrypsin with its inhibitor turkey ovomucoid third domain at 1.8 Å resolution
    • Fujinaga, M., A. R. Sielecki, R. J. Read, W. Ardelt, M. Laskowski, and M. N. James. 1987. Crystal and molecular structures of the complex of alpha-chymotrypsin with its inhibitor turkey ovomucoid third domain at 1.8 Å resolution. J. Mol. Biol. 195:397-418.
    • (1987) J. Mol. Biol. , vol.195 , pp. 397-418
    • Fujinaga, M.1    Sielecki, A.R.2    Read, R.J.3    Ardelt, W.4    Laskowski, M.5    James, M.N.6
  • 31
    • 0028354429 scopus 로고
    • Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR
    • Gallagher, T., P. Alexander, P. Bryan, and G. L. Gilliland. 1994. Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR. Biochemistry. 33: 4721-4729.
    • (1994) Biochemistry , vol.33 , pp. 4721-4729
    • Gallagher, T.1    Alexander, P.2    Bryan, P.3    Gilliland, G.L.4
  • 34
    • 0032856161 scopus 로고    scopus 로고
    • Buried, charged, non-ion-paired aspartic acid 76 contributes favorably to the conformational stability of ribonuclease T1
    • Giletto, A., and C. N. Pace. 1999. Buried, charged, non-ion-paired aspartic acid 76 contributes favorably to the conformational stability of ribonuclease T1. Biochemistry. 38:13379-13384.
    • (1999) Biochemistry , vol.38 , pp. 13379-13384
    • Giletto, A.1    Pace, C.N.2
  • 35
    • 0023899747 scopus 로고
    • Energetics of charge-charge interactions in proteins
    • Gilson, M. K., and B. Honig. 1988. Energetics of charge-charge interactions in proteins. Proteins. 3:32-52.
    • (1988) Proteins , vol.3 , pp. 32-52
    • Gilson, M.K.1    Honig, B.2
  • 36
    • 0021813940 scopus 로고
    • On the calculation of electrostatic interactions in proteins
    • Gilson, M. K., A. Rashin, R. Fine, and B. Honig. 1985. On the calculation of electrostatic interactions in proteins. J. Mol. Biol. 183:503-516.
    • (1985) J. Mol. Biol. , vol.183 , pp. 503-516
    • Gilson, M.K.1    Rashin, A.2    Fine, R.3    Honig, B.4
  • 37
    • 84988087911 scopus 로고
    • Calculating the electrostatic potential of molecules in solution: Method and error assessment
    • Gilson, M. K., K. A. Sharp, and B. H. Honig. 1987. Calculating the electrostatic potential of molecules in solution: Method and error assessment. J. Comp. Chem. 9:327-335.
    • (1987) J. Comp. Chem. , vol.9 , pp. 327-335
    • Gilson, M.K.1    Sharp, K.A.2    Honig, B.H.3
  • 40
    • 0034640465 scopus 로고    scopus 로고
    • A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins
    • Gunner, M. R., and E. Alexov. 2000. A pragmatic approach to structure based calculation of coupled proton and electron transfer in proteins. Biochim. Biophys. Acta. 1458:63-87.
    • (2000) Biochim. Biophys. Acta , vol.1458 , pp. 63-87
    • Gunner, M.R.1    Alexov, E.2
  • 41
    • 0034091669 scopus 로고    scopus 로고
    • Backbone dipoles generate positive potentials in all proteins: Origins and implications of the effect
    • Gunner, M. R., M. Saleh, E. Cross, A. ud-Doula, and M. Wise. 2000. Backbone dipoles generate positive potentials in all proteins: origins and implications of the effect. Biophys. J. 78:1126-1144.
    • (2000) Biophys. J. , vol.78 , pp. 1126-1144
    • Gunner, M.R.1    Saleh, M.2    Cross, E.3    Ud-Doula, A.4    Wise, M.5
  • 42
    • 0033613164 scopus 로고    scopus 로고
    • Tanford-Kirkwood electrostatics for protein modeling
    • Havranek, J. J., and P. B. Harbury. 1999. Tanford-Kirkwood electrostatics for protein modeling. Proc. Natl. Acad. Sci. U. S. A. 96:11145-11150.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 11145-11150
    • Havranek, J.J.1    Harbury, P.B.2
  • 43
    • 4243067681 scopus 로고    scopus 로고
    • Protein stabilization by removal of unsatisfied polar groups: Computational approaches and experimental tests
    • Hendsch, Z. S., T. Jonsson, R. T. Sauer, and B. Tidor. 1996. Protein stabilization by removal of unsatisfied polar groups: computational approaches and experimental tests. Biochemistry. 35:7621-7625.
    • (1996) Biochemistry , vol.35 , pp. 7621-7625
    • Hendsch, Z.S.1    Jonsson, T.2    Sauer, R.T.3    Tidor, B.4
  • 44
    • 0029016182 scopus 로고
    • Classical electrostatics in biology and chemistry
    • Honig, B., and A. Nicholls. 1995. Classical electrostatics in biology and chemistry. Science. 268:1144-1149.
    • (1995) Science , vol.268 , pp. 1144-1149
    • Honig, B.1    Nicholls, A.2
  • 45
    • 0030442990 scopus 로고    scopus 로고
    • Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures
    • Hooft, R. W. W., C. Sander, and G. Vriend. 1996. Positioning hydrogen atoms by optimizing hydrogen-bond networks in protein structures. Proteins. 26:363-376.
    • (1996) Proteins , vol.26 , pp. 363-376
    • Hooft, R.W.W.1    Sander, C.2    Vriend, G.3
  • 46
    • 0028863028 scopus 로고
    • Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data
    • Hoogstraten, C. G., S. Choe, W. M. Westler, and J. L. Markley. 1995. Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data. Protein Sci. 4:2289-2299.
    • (1995) Protein Sci. , vol.4 , pp. 2289-2299
    • Hoogstraten, C.G.1    Choe, S.2    Westler, W.M.3    Markley, J.L.4
  • 47
    • 84944815380 scopus 로고
    • Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body TLS model
    • Howlin, B., D. S. Moss, and G. W. Harris. 1989. Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body TLS model. Acta Crystallogr. A. 45:851-861.
    • (1989) Acta Crystallogr. A , vol.45 , pp. 851-861
    • Howlin, B.1    Moss, D.S.2    Harris, G.W.3
  • 48
    • 0026005186 scopus 로고
    • Human immunodeficiency virus-1 protease 2: Use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism
    • Hyland, L. J., T. A. Tomaszek, Jr., and T. D. Meek. 1991. Human immunodeficiency virus-1 protease 2: use of pH rate studies and solvent kinetic isotope effects to elucidate details of chemical mechanism. Biochemistry. 30:8454-8463.
    • (1991) Biochemistry , vol.30 , pp. 8454-8463
    • Hyland, L.J.1    Tomaszek T.A., Jr.2    Meek, T.D.3
  • 49
    • 0026325601 scopus 로고
    • Kinetic studies of human immunodeficiency virus type I protease and its active-site hydrogen bond mutant A28S
    • Ido, E., H. P. Han, F. J. Kezdy, and J. Tang. 1991. Kinetic studies of human immunodeficiency virus type I protease and its active-site hydrogen bond mutant A28S. J. Biol. Chem. 266:24359-24366.
    • (1991) J. Biol. Chem. , vol.266 , pp. 24359-24366
    • Ido, E.1    Han, H.P.2    Kezdy, F.J.3    Tang, J.4
  • 50
    • 0019555878 scopus 로고
    • Nuclear magnetic resonance study on the microenvironments of histidine residues of ribonuclease T1 and carboxymethylated ribonuclease T1
    • Inagaki, F., Y. Kawano, I. Shimada, K. Takahashi, and T. Miyazawa. 1981. Nuclear magnetic resonance study on the microenvironments of histidine residues of ribonuclease T1 and carboxymethylated ribonuclease T1. J. Biochem. (Tokyo). 89:1185-1195.
    • (1981) J. Biochem. (Tokyo) , vol.89 , pp. 1185-1195
    • Inagaki, F.1    Kawano, Y.2    Shimada, I.3    Takahashi, K.4    Miyazawa, T.5
  • 51
    • 0026488252 scopus 로고
    • Crystal structure at 2.8 Å resolution of a soluble form of the cell adhesion molecule CD2
    • Jones, E. Y., S. J. Davis, A. F. Williams, K. Harlos, and D. I. Stuart. 1992. Crystal structure at 2.8 Å resolution of a soluble form of the cell adhesion molecule CD2. Nature. 360:232-239.
    • (1992) Nature , vol.360 , pp. 232-239
    • Jones, E.Y.1    Davis, S.J.2    Williams, A.F.3    Harlos, K.4    Stuart, D.I.5
  • 54
    • 0030596490 scopus 로고    scopus 로고
    • Measurement and modeling of sequence-specific pKa values of lysine residues in calbindin D9k
    • Kesvatera, T., B. Jonsson, E. Thulin, and S. Linse. 1996. Measurement and modeling of sequence-specific pKa values of lysine residues in calbindin D9k. J. Mol. Biol. 259:828-839.
    • (1996) J. Mol. Biol. , vol.259 , pp. 828-839
    • Kesvatera, T.1    Jonsson, B.2    Thulin, E.3    Linse, S.4
  • 55
    • 0344500828 scopus 로고    scopus 로고
    • Ionization behavior of acidic residues in calbindin D(9k)
    • Kesvatera, T., B. Jonsson, E. Thulin, and S. Linse. 1999. Ionization behavior of acidic residues in calbindin D(9k). Proteins. 37:106-115.
    • (1999) Proteins , vol.37 , pp. 106-115
    • Kesvatera, T.1    Jonsson, B.2    Thulin, E.3    Linse, S.4
  • 56
    • 0030610243 scopus 로고    scopus 로고
    • a measurements from nuclear magnetic resonance for the B1 and B2 immunoglobulin G-binding domains of protein G: Comparison with calculated values for nuclear magnetic resonance and X-ray structures
    • a measurements from nuclear magnetic resonance for the B1 and B2 immunoglobulin G-binding domains of protein G: comparison with calculated values for nuclear magnetic resonance and X-ray structures. Biochemistry. 36:3580-3589.
    • (1997) Biochemistry , vol.36 , pp. 3580-3589
    • Khare, D.1    Alexander, P.2    Antosiewicz, J.3    Byran, P.4    Gilson, M.5    Orban, J.6
  • 57
    • 0024974064 scopus 로고
    • Crystal structure of guanosine-free ribonuclease T1, complexed with vanadate (V), suggests conformational change upon substrate binding
    • Kostrewa, D., H. W. Choe, U. Heinemann, and W. Saenger. 1989. Crystal structure of guanosine-free ribonuclease T1, complexed with vanadate (V), suggests conformational change upon substrate binding. Biochemistry. 28:7592-7600.
    • (1989) Biochemistry , vol.28 , pp. 7592-7600
    • Kostrewa, D.1    Choe, H.W.2    Heinemann, U.3    Saenger, W.4
  • 58
    • 0018945613 scopus 로고
    • Analysis of the acid-base titration curve of hen lysozyme
    • Kuramitsu, S., and K. Hamaguchi. 1980. Analysis of the acid-base titration curve of hen lysozyme. J. Biochem. 87:1215-1219.
    • (1980) J. Biochem. , vol.87 , pp. 1215-1219
    • Kuramitsu, S.1    Hamaguchi, K.2
  • 61
    • 0027257747 scopus 로고
    • Longrange surface charge-charge interactions in proteins: Comparison of experimental results with calculations from a theoretical method
    • Loewenthal, R., J. Sancho, T. Reinikainen, and A. R. Ferst. 1993. Longrange surface charge-charge interactions in proteins: comparison of experimental results with calculations from a theoretical method. J. Mol. Biol. 232:574-583.
    • (1993) J. Mol. Biol. , vol.232 , pp. 574-583
    • Loewenthal, R.1    Sancho, J.2    Reinikainen, T.3    Ferst, A.R.4
  • 62
    • 0033536594 scopus 로고    scopus 로고
    • Structural changes in bacteriorhodopsin during ion transport at 2 Ångstrom resolution
    • Luecke, H., B. Schobert, H. T. Richter, J. P. Cartailler, and J. K. Lanyi. 1999. Structural changes in bacteriorhodopsin during ion transport at 2 Ångstrom resolution. Science. 286:255-261.
    • (1999) Science , vol.286 , pp. 255-261
    • Luecke, H.1    Schobert, B.2    Richter, H.T.3    Cartailler, J.P.4    Lanyi, J.K.5
  • 63
    • 0020481290 scopus 로고
    • Analysis of electrostatic interactions and their relationship to conformation and stability of bovine pancreatic trypsin inhibitor
    • March, K. L., D. G. Maskalick, R. D. England, S. H. Friend, and F. R. Gurd. 1982. Analysis of electrostatic interactions and their relationship to conformation and stability of bovine pancreatic trypsin inhibitor. Biochemistry. 21:5241-5251.
    • (1982) Biochemistry , vol.21 , pp. 5241-5251
    • March, K.L.1    Maskalick, D.G.2    England, R.D.3    Friend, S.H.4    Gurd, F.R.5
  • 64
    • 84977303841 scopus 로고
    • The geometry of the reactive site and of the peptide groups in trypsin, trypsinogen and its complexes with inhibitors
    • Marquart, M., J. Walter, J. Deisenhofer, W. Bode, and R. Huber. 1983. The geometry of the reactive site and of the peptide groups in trypsin, trypsinogen and its complexes with inhibitors. Acta Crystallogr. Sect. B. 39:480-490.
    • (1983) Acta Crystallogr. Sect. B , vol.39 , pp. 480-490
    • Marquart, M.1    Walter, J.2    Deisenhofer, J.3    Bode, W.4    Huber, R.5
  • 67
    • 0015749986 scopus 로고
    • A Fourier transform NMR study of the thermal denaturation of ribonuclease A at low pH
    • Matthews, C. R., and D. G. Westmoreland. 1973. A Fourier transform NMR study of the thermal denaturation of ribonuclease A at low pH. Ann. N.Y. Acad. Sci. 222:240-254.
    • (1973) Ann. N.Y. Acad. Sci. , vol.222 , pp. 240-254
    • Matthews, C.R.1    Westmoreland, D.G.2
  • 70
    • 0025044680 scopus 로고
    • Contribution of histidine residues to the conformational stability of ribonuclease T1 and mutant Glu-58→Ala
    • McNutt, M., L. S. Mullins, F. M. Raushel, and C. N. Pace. 1990. Contribution of histidine residues to the conformational stability of ribonuclease T1 and mutant Glu-58→Ala. Biochemistry. 29:7572-7576.
    • (1990) Biochemistry , vol.29 , pp. 7572-7576
    • McNutt, M.1    Mullins, L.S.2    Raushel, F.M.3    Pace, C.N.4
  • 71
    • 0014675153 scopus 로고
    • Nuclear magnetic resonance studies of the structure and binding sites of enzymes: 8. Inhibitor binding to ribonuclease
    • Meadows, D. H., G. C. Roberts, and O. Jardetzky. 1969. Nuclear magnetic resonance studies of the structure and binding sites of enzymes: 8. Inhibitor binding to ribonuclease. J. Mol. Biol. 45:491-511.
    • (1969) J. Mol. Biol. , vol.45 , pp. 491-511
    • Meadows, D.H.1    Roberts, G.C.2    Jardetzky, O.3
  • 72
    • 0033012333 scopus 로고    scopus 로고
    • A self-consistent, microenvironment modulated screened Coulomb potential approximation to calculate pH-dependent electrostatic effects in proteins
    • Mehler, E. L., and F. Guarnieri. 1999. A self-consistent, microenvironment modulated screened Coulomb potential approximation to calculate pH-dependent electrostatic effects in proteins. Biophys. J. 77:3-22.
    • (1999) Biophys. J. , vol.77 , pp. 3-22
    • Mehler, E.L.1    Guarnieri, F.2
  • 73
    • 0027249690 scopus 로고
    • Clarification of the pH-dependent kinetic behavior of papain by using reactivity probes and analysis of alkylation and catalysed acylation reactions in terms of multihydronic state models: Implications for electrostatics calculations and interpretation of the consequences for site-specific mutations such as Asp-158-Asn and Asp-158-Glu
    • Mellor, G. W., M. Patel, E. W. Thomas, and K. Brocklehurst. 1993. Clarification of the pH-dependent kinetic behavior of papain by using reactivity probes and analysis of alkylation and catalysed acylation reactions in terms of multihydronic state models: implications for electrostatics calculations and interpretation of the consequences for site-specific mutations such as Asp-158-Asn and Asp-158-Glu. Biochem. J. 294:201-210.
    • (1993) Biochem. J. , vol.294 , pp. 201-210
    • Mellor, G.W.1    Patel, M.2    Thomas, E.W.3    Brocklehurst, K.4
  • 74
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • Murzin, A. G., S. E. Brenner, T. Hubbard, and C. Chothia. 1995. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:536-540.
    • (1995) J. Mol. Biol. , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 75
    • 84986486656 scopus 로고
    • A rapid finite difference algorithm utilizing successive over-relaxation to solve the Poisson-Boltzmann equation
    • Nicholls, A., and B. Honig. 1991. A rapid finite difference algorithm utilizing successive over-relaxation to solve the Poisson-Boltzmann equation. J. Comp. Chem. 12:435-445.
    • (1991) J. Comp. Chem. , vol.12 , pp. 435-445
    • Nicholls, A.1    Honig, B.2
  • 77
    • 0028232021 scopus 로고
    • Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR
    • Oda, Y., T. Yamazaki, K. Nagayama, S. Kanaya, Y. Kuroda, and H. Nakamura. 1994. Individual ionization constants of all the carboxyl groups in ribonuclease HI from Escherichia coli determined by NMR. Biochemistry. 33:5275-5284.
    • (1994) Biochemistry , vol.33 , pp. 5275-5284
    • Oda, Y.1    Yamazaki, T.2    Nagayama, K.3    Kanaya, S.4    Kuroda, Y.5    Nakamura, H.6
  • 78
    • 0027472170 scopus 로고
    • Role of histidine 124 in the catalytic function of ribonuclease HI from Escherichia coli
    • Oda, Y., M. Yoshida, and S. Kanaya. 1993. Role of histidine 124 in the catalytic function of ribonuclease HI from Escherichia coli. J. Biol. Chem. 268:88-92.
    • (1993) J. Biol. Chem. , vol.268 , pp. 88-92
    • Oda, Y.1    Yoshida, M.2    Kanaya, S.3
  • 79
    • 0028983182 scopus 로고
    • a values of the denatured state are on average 0.4 units lower than those of model compounds
    • a values of the denatured state are on average 0.4 units lower than those of model compounds. Biochemistry. 34:9424-9433.
    • (1995) Biochemistry , vol.34 , pp. 9424-9433
    • Oliveberg, M.1    Arcus, V.L.2    Fersht, A.R.3
  • 80
    • 0035957234 scopus 로고    scopus 로고
    • A novel view of pH titration in biomolecules
    • Onufriev, A., D. A. Case, and G. M. Ullmann. 2001. A novel view of pH titration in biomolecules. Biochemistry. 40:3413-3419.
    • (2001) Biochemistry , vol.40 , pp. 3413-3419
    • Onufriev, A.1    Case, D.A.2    Ullmann, G.M.3
  • 81
    • 0032589144 scopus 로고    scopus 로고
    • a values in the wild-type, D121N, and D121A enzymes
    • a values in the wild-type, D121N, and D121A enzymes. Biophys. J. 76:1571-1579.
    • (1999) Biophys. J. , vol.76 , pp. 1571-1579
    • Quirk, D.J.1    Raines, R.T.2
  • 83
    • 0021102433 scopus 로고
    • Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8 Å resolution
    • Read, R. J., M. Fujinaga, A. R. Sielecki, and M. N. James. 1983. Structure of the complex of Streptomyces griseus protease B and the third domain of the turkey ovomucoid inhibitor at 1.8 Å resolution. Biochemistry. 22:4420-4433.
    • (1983) Biochemistry , vol.22 , pp. 4420-4433
    • Read, R.J.1    Fujinaga, M.2    Sielecki, A.R.3    James, M.N.4
  • 84
    • 0018118592 scopus 로고
    • Carbon-13 NMR chemical shifts of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH
    • Richarz, R., and K. Wüthrich. 1975. Carbon-13 NMR chemical shifts of the common amino acid residues measured in aqueous solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH. Biopolymers. 17: 2133-2141.
    • (1975) Biopolymers , vol.17 , pp. 2133-2141
    • Richarz, R.1    Wüthrich, K.2
  • 85
    • 85031447904 scopus 로고
    • C. M. Cuchillo, R. de Llorens, M. V. Nogues, X. Pares, editors. Sant Feliu de Guixols, Girona, Spain
    • 1H NMR. C. M. Cuchillo, R. de Llorens, M. V. Nogues, X. Pares, editors. Sant Feliu de Guixols, Girona, Spain. 9-14.
    • (1991) 1H NMR , pp. 9-14
    • Rico, M.1    Santoro, J.2    Gonzalez, C.3    Bruix, M.4    Neira, J.L.5
  • 86
    • 0030582736 scopus 로고    scopus 로고
    • Coupling between folding and ionization equilibria: Effects of pH on the conformational preferences of polypeptides
    • Ripoll, D. R., Y. N. Vorobjev, A. Liwo, J. A. Vila, and H. A. Scheraga. 1996. Coupling between folding and ionization equilibria: effects of pH on the conformational preferences of polypeptides. J. Mol. Biol. 264: 770-783.
    • (1996) J. Mol. Biol. , vol.264 , pp. 770-783
    • Ripoll, D.R.1    Vorobjev, Y.N.2    Liwo, A.3    Vila, J.A.4    Scheraga, H.A.5
  • 87
    • 0035913537 scopus 로고    scopus 로고
    • Extending the applicability of the nonlinear Poisson-Boltzmann equation: Multiple dielectric constants and multivalent ions
    • Rocchia, W., E. Alexov, and B. Honig. 2001. Extending the applicability of the nonlinear Poisson-Boltzmann equation: multiple dielectric constants and multivalent ions. J. Phys. Chem. B. 105:6507-6514.
    • (2001) J. Phys. Chem. B , vol.105 , pp. 6507-6514
    • Rocchia, W.1    Alexov, E.2    Honig, B.3
  • 88
    • 0014511186 scopus 로고
    • NMR-studies on the structure of the active site of pancreatic ribonuclease A
    • Ruterjans, H., and H. Witzel. 1969. NMR-studies on the structure of the active site of pancreatic ribonuclease A. Eur. J. Biochem. 9:118-127.
    • (1969) Eur. J. Biochem. , vol.9 , pp. 118-127
    • Ruterjans, H.1    Witzel, H.2
  • 89
    • 0027511809 scopus 로고
    • High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy
    • Santoro, J., C. Gonzalez, M. Bruix, J. L. Neira, J. L. Nieto, J. Herranz, and M. Rico. 1993. High-resolution three-dimensional structure of ribonuclease A in solution by nuclear magnetic resonance spectroscopy. J. Mol. Biol. 229:722-734.
    • (1993) J. Mol. Biol. , vol.229 , pp. 722-734
    • Santoro, J.1    Gonzalez, C.2    Bruix, M.3    Neira, J.L.4    Nieto, J.L.5    Herranz, J.6    Rico, M.7
  • 90
    • 0028951968 scopus 로고
    • pH, ionic strength, and temperature dependences of ionization equilibria for the carboxyl groups in turkey ovomucoid third domain
    • Schaller, W., and A. D. Roberston. 1995. pH, ionic strength, and temperature dependences of ionization equilibria for the carboxyl groups in turkey ovomucoid third domain. Biochemistry. 34:4714-4723.
    • (1995) Biochemistry , vol.34 , pp. 4714-4723
    • Schaller, W.1    Roberston, A.D.2
  • 91
    • 0035451052 scopus 로고    scopus 로고
    • What are the "dielectric constants" of proteins and how to validate electrostatic models?
    • Schutz, C. N., and A. Warshel. 2001. What are the "dielectric constants" of proteins and how to validate electrostatic models? Proteins. 44: 400-417.
    • (2001) Proteins , vol.44 , pp. 400-417
    • Schutz, C.N.1    Warshel, A.2
  • 93
    • 0000671518 scopus 로고    scopus 로고
    • a's of ionizable residues in proteins: Semi-microscopic and microscopic approaches
    • a's of ionizable residues in proteins: semi-microscopic and microscopic approaches. J. Phys. Chem. 101:4458-4472.
    • (1997) J. Phys. Chem. , vol.101 , pp. 4458-4472
    • Sham, Y.Y.1    Chu, Z.T.2    Warshel, A.3
  • 94
    • 0010624785 scopus 로고    scopus 로고
    • The effect of protein relaxation on charge-charge interactions and dielectric constant of proteins
    • Sham, Y. Y., I. Muegge, and A. Warshel. 1998. The effect of protein relaxation on charge-charge interactions and dielectric constant of proteins. Biophys. J. 74:1744-1753.
    • (1998) Biophys. J. , vol.74 , pp. 1744-1753
    • Sham, Y.Y.1    Muegge, I.2    Warshel, A.3
  • 95
    • 0344418714 scopus 로고    scopus 로고
    • Simulating proton translocations in proteins: Probing proton transfer pathways in the Rhodobacter sphaeroides reaction center
    • Sham, Y. Y., I. Muegge, and A. Warshel. 1999. Simulating proton translocations in proteins: probing proton transfer pathways in the Rhodobacter sphaeroides reaction center. Proteins. 36:484-500.
    • (1999) Proteins , vol.36 , pp. 484-500
    • Sham, Y.Y.1    Muegge, I.2    Warshel, A.3
  • 96
    • 0034039797 scopus 로고    scopus 로고
    • Electrostatic aspects of protein-protein interactions
    • Sheinerman, F. B., R. Norel, and B. Honig. 2000. Electrostatic aspects of protein-protein interactions. Curr. Opin. Struct. Biol. 10: 153-159.
    • (2000) Curr. Opin. Struct. Biol. , vol.10 , pp. 153-159
    • Sheinerman, F.B.1    Norel, R.2    Honig, B.3
  • 97
    • 80053073402 scopus 로고    scopus 로고
    • Dielectric constant of cytochrome c from simulations in a water droplet including all electrostatic interactions
    • Simonson, T. 1998. Dielectric constant of cytochrome c from simulations in a water droplet including all electrostatic interactions. J. Am. Chem. Soc. 120:4873-4878.
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 4873-4878
    • Simonson, T.1
  • 98
    • 0035312551 scopus 로고    scopus 로고
    • Macromolecular electrostatics: Continuum models and their growing pains
    • Simonson, T. 2001. Macromolecular electrostatics: continuum models and their growing pains. Curr. Opin. Struct. Biol. 11:243-252.
    • (2001) Curr. Opin. Struct. Biol. , vol.11 , pp. 243-252
    • Simonson, T.1
  • 99
    • 0029833446 scopus 로고    scopus 로고
    • Charge screening and the dielectric constant of proteins: Insights from molecular dynamics
    • Simonson, T., and C. L. Brooks. 1996. Charge screening and the dielectric constant of proteins: insights from molecular dynamics. J. Am. Chem. Soc. 118:8452-8458.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 8452-8458
    • Simonson, T.1    Brooks, C.L.2
  • 100
    • 0031659672 scopus 로고    scopus 로고
    • Effects of salt bridges on protein structure and design
    • Sindelar, C., Z. Hendsch, and B. Tidor. 1998. Effects of salt bridges on protein structure and design. Protein Sci. 7:1898-1914.
    • (1998) Protein Sci. , vol.7 , pp. 1898-1914
    • Sindelar, C.1    Hendsch, Z.2    Tidor, B.3
  • 101
    • 32844457567 scopus 로고
    • Accurate calculation of hydration free energies using macroscopic solvent models
    • Sitkoff, D., K. A. Sharp, and B. Honig. 1994. Accurate calculation of hydration free energies using macroscopic solvent models. J. Phys. Chem. 98:1978-1988.
    • (1994) J. Phys. Chem. , vol.98 , pp. 1978-1988
    • Sitkoff, D.1    Sharp, K.A.2    Honig, B.3
  • 102
    • 0029017511 scopus 로고
    • Determination of the solution structure of Apo calbindin D9k by NMR spectroscopy
    • Skelton, N. J., J. Kordel, and W. J. Chazin. 1995. Determination of the solution structure of Apo calbindin D9k by NMR spectroscopy. J. Mol. Biol. 249:441-462.
    • (1995) J. Mol. Biol. , vol.249 , pp. 441-462
    • Skelton, N.J.1    Kordel, J.2    Chazin, W.J.3
  • 104
    • 0034950683 scopus 로고    scopus 로고
    • 15N NMR chemical shifts of turkey ovomucoid third domain upon binding to bovine chymotrypsin A(alpha)
    • 15N NMR chemical shifts of turkey ovomucoid third domain upon binding to bovine chymotrypsin A(alpha). J. Mol. Recogn. 14:166-171.
    • (2001) J. Mol. Recogn. , vol.14 , pp. 166-171
    • Song, J.1    Markley, J.L.2
  • 105
    • 0000174762 scopus 로고    scopus 로고
    • Multiple site ligand binding to flexible macromolecules separation of global and local conformational change and an iterative mobile clustering approach
    • Spassov, V. Z., and D. Bashford. 1999. Multiple site ligand binding to flexible macromolecules separation of global and local conformational change and an iterative mobile clustering approach. J. Comp. Chem. 20:1091-1111.
    • (1999) J. Comp. Chem. , vol.20 , pp. 1091-1111
    • Spassov, V.Z.1    Bashford, D.2
  • 106
    • 0030926503 scopus 로고    scopus 로고
    • Optimization of the electrostatic interactions between ionized groups and peptide dipoles in proteins
    • Spassov, V. Z., R. Ladenstein, and A. D. Karshikoff. 1997. Optimization of the electrostatic interactions between ionized groups and peptide dipoles in proteins. Protein Sci. 6:1190-1196.
    • (1997) Protein Sci. , vol.6 , pp. 1190-1196
    • Spassov, V.Z.1    Ladenstein, R.2    Karshikoff, A.D.3
  • 107
    • 0000328844 scopus 로고
    • A new vertex algorithm to calculate solvent accessible surface areas
    • Sridharan, S., A. Nicholls, and B. Honig. 1992. A new vertex algorithm to calculate solvent accessible surface areas. Biophys. J. 61:A174.
    • (1992) Biophys. J. , vol.61
    • Sridharan, S.1    Nicholls, A.2    Honig, B.3
  • 108
    • 0032508408 scopus 로고    scopus 로고
    • A p561ck-independent pathway of CD2 signaling involves Jun kinase
    • Sunder-Plassmann, R., and E. L. Reinherz. 1998. A p561ck-independent pathway of CD2 signaling involves Jun kinase. J. Biol. Chem. 273: 24249-24257.
    • (1998) J. Biol. Chem. , vol.273 , pp. 24249-24257
    • Sunder-Plassmann, R.1    Reinherz, E.L.2
  • 109
    • 0022972435 scopus 로고
    • The refined structure of vitamin D-dependent calcium-binding protein from bovine intestine: Molecular details, ion binding, and implications for the structure of other calcium-binding proteins
    • Szebenyi, D. M., and K. Moffat. 1986. The refined structure of vitamin D-dependent calcium-binding protein from bovine intestine: molecular details, ion binding, and implications for the structure of other calcium-binding proteins. J. Biol. Chem. 261:8761-8777.
    • (1986) J. Biol. Chem. , vol.261 , pp. 8761-8777
    • Szebenyi, D.M.1    Moffat, K.2
  • 111
    • 0013829387 scopus 로고
    • Dielectric dispersion of crystalline powders of amino acids, peptides, and proteins
    • Takashima, S., and H. Schwan. 1965. Dielectric dispersion of crystalline powders of amino acids, peptides, and proteins. J. Phys. Chem. 69: 4176-4182.
    • (1965) J. Phys. Chem. , vol.69 , pp. 4176-4182
    • Takashima, S.1    Schwan, H.2
  • 112
    • 0029131806 scopus 로고
    • Structures of bacterial immunoglobulin-binding domains and their complexes with immunoglobulins
    • Tashiro, M., and G. T. Montelione. 1995. Structures of bacterial immunoglobulin-binding domains and their complexes with immunoglobulins. Curr. Opin. Struct. Biol. 5:471-481.
    • (1995) Curr. Opin. Struct. Biol. , vol.5 , pp. 471-481
    • Tashiro, M.1    Montelione, G.T.2
  • 114
    • 0029140842 scopus 로고
    • Topology of the CD2-CD48 cell-adhesion molecule complex: Implications for antigen recognition by T cells
    • van der Merwe, P. A., P. N. McNamee, E. A. Davies, A. N. Barclay, and S. J. Davis. 1995. Topology of the CD2-CD48 cell-adhesion molecule complex: implications for antigen recognition by T cells. Curr. Biol. 5:74-84.
    • (1995) Curr. Biol. , vol.5 , pp. 74-84
    • Van der Merwe, P.A.1    McNamee, P.N.2    Davies, E.A.3    Barclay, A.N.4    Davis, S.J.5
  • 116
    • 0000695363 scopus 로고    scopus 로고
    • Highresolution structure (1.33 Ång) of HEWL Lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from SpacHab-01 mission
    • Vaney, M. C., S. Maignan, M. Ries-Kautt. and A. Ducruix. 1996. Highresolution structure (1.33 Ång) of HEWL Lysozyme tetragonal crystal grown in the APCF apparatus. Data and structural comparison with a crystal grown under microgravity from SpacHab-01 mission. Acta Crystallogr. Sect. D. 52:505-517.
    • (1996) Acta Crystallogr. Sect. D , vol.52 , pp. 505-517
    • Vaney, M.C.1    Maignan, S.2    Ries-Kautt, M.3    Ducruix, A.4
  • 117
    • 0035939953 scopus 로고    scopus 로고
    • Catalysis by hen egg-white lysozyme proceeds via a covalent intermediate
    • Vocadlo, D. J., G. L. Davies, R. Laine, and S. G. Withers. 2001. Catalysis by hen egg-white lysozyme proceeds via a covalent intermediate. Nature. 23:835-838.
    • (2001) Nature , vol.23 , pp. 835-838
    • Vocadlo, D.J.1    Davies, G.L.2    Laine, R.3    Withers, S.G.4
  • 118
    • 0001315749 scopus 로고    scopus 로고
    • A model of a local dielectric constant in proteins
    • Voges, D., and A. Karshikoff. 1998. A model of a local dielectric constant in proteins. J. Chem. Phys. 108:2219-2227.
    • (1998) J. Chem. Phys. , vol.108 , pp. 2219-2227
    • Voges, D.1    Karshikoff, A.2
  • 119
    • 0019321349 scopus 로고
    • Tautomeric states of the histidine residues of bovine pancreatic ribonuclease A: Application of carbon 13 nuclear magnetic resonance spectroscopy
    • Walters, D. E., and A. Allerhand. 1980. Tautomeric states of the histidine residues of bovine pancreatic ribonuclease A: application of carbon 13 nuclear magnetic resonance spectroscopy. J. Biol. Chem. 255: 6200-6204.
    • (1980) J. Biol. Chem. , vol.255 , pp. 6200-6204
    • Walters, D.E.1    Allerhand, A.2
  • 120
    • 0021476470 scopus 로고
    • Calculations of electrostatic interactions in biological systems and in solutions
    • Warshel, A., and S. T. Russell. 1984. Calculations of electrostatic interactions in biological systems and in solutions. Q. Rev. Biophys. 17: 283-422.
    • (1984) Q. Rev. Biophys. , vol.17 , pp. 283-422
    • Warshel, A.1    Russell, S.T.2
  • 121
    • 0032586777 scopus 로고    scopus 로고
    • a and acid pH-dependent stability estimation in proteins: Removing dielectric and counterion boundaries
    • a and acid pH-dependent stability estimation in proteins: removing dielectric and counterion boundaries. Protein Sci. 8:418-425.
    • (1999) Protein Sci. , vol.8 , pp. 418-425
    • Warwicker, J.1
  • 122
    • 0020475509 scopus 로고
    • Calculation of the electric potential in the active site cleft due to a α-helix dipoles
    • Warwicker, J., and H. C. Watson. 1982. Calculation of the electric potential in the active site cleft due to a α-helix dipoles. J. Mol. Biol. 157: 671-679.
    • (1982) J. Mol. Biol. , vol.157 , pp. 671-679
    • Warwicker, J.1    Watson, H.C.2
  • 123
    • 0026757625 scopus 로고
    • Structural and thermodynamic analysis of compensating mutations within the core of chicken egg white lysozyme
    • Wilson, K. S., B. A. Malcolm, and B. W. Matthews. 1992. Structural and thermodynamic analysis of compensating mutations within the core of chicken egg white lysozyme. J. Biol. Chem. 267:10842-10849.
    • (1992) J. Biol. Chem. , vol.267 , pp. 10842-10849
    • Wilson, K.S.1    Malcolm, B.A.2    Matthews, B.W.3
  • 124
    • 0024291642 scopus 로고
    • Structure of phosphate-free ribonuclease A refined at 1.26 A
    • Wlodawer, A., L. A. Svensson, L. Sjolin, and G. L. Gilliland. 1988. Structure of phosphate-free ribonuclease A refined at 1.26 A. Biochemistry. 27:2705-2717.
    • (1988) Biochemistry , vol.27 , pp. 2705-2717
    • Wlodawer, A.1    Svensson, L.A.2    Sjolin, L.3    Gilliland, G.L.4
  • 125
    • 0028093141 scopus 로고
    • On the probability of finding a water molecule in a nonpolar cavity
    • Wolfenden, R., and A. Radzicka. 1994. On the probability of finding a water molecule in a nonpolar cavity. Science. 265:936-937.
    • (1994) Science , vol.265 , pp. 936-937
    • Wolfenden, R.1    Radzicka, A.2
  • 126
    • 0030724374 scopus 로고    scopus 로고
    • Structure and function in Escherichia coli of plasmids containing pyrimidine/purine-biased stretch originated from the 5′-flanking region of the basidiomycete ras gene
    • Yamazaki, T., T. Hasebe, J. Shouguchi, H. Amano, S. Kajiwara, and K. Shishido. 1997. Structure and function in Escherichia coli of plasmids containing pyrimidine/purine-biased stretch originated from the 5′-flanking region of the basidiomycete ras gene. J. Biochem. (Tokyo). 122:696-702.
    • (1997) J. Biochem. (Tokyo) , vol.122 , pp. 696-702
    • Yamazaki, T.1    Hasebe, T.2    Shouguchi, J.3    Amano, H.4    Kajiwara, S.5    Shishido, K.6
  • 127
    • 0027231258 scopus 로고
    • On the pH dependence of protein stability
    • Yang, A., and B. Honig. 1993. On the pH dependence of protein stability. J. Mol. Biol. 231:459-474.
    • (1993) J. Mol. Biol. , vol.231 , pp. 459-474
    • Yang, A.1    Honig, B.2
  • 129
    • 0025129937 scopus 로고
    • Structure of ribonuclease H phased at 2 Å resolution by MAD analysis of the selenomethionyl protein
    • Yang, W., W. A. Hendrickson, R. J. Crouch, and Y. Satow. 1990. Structure of ribonuclease H phased at 2 Å resolution by MAD analysis of the selenomethionyl protein. Science. 249:1398-1405.
    • (1990) Science , vol.249 , pp. 1398-1405
    • Yang, W.1    Hendrickson, W.A.2    Crouch, R.J.3    Satow, Y.4
  • 130
    • 0028859420 scopus 로고
    • Conformation and hydrogen ion titration of proteins: A continuum electrostatic model with conformational flexibility
    • You, T. J., and D. Bashford. 1995. Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility. Biophys. J. 69:1721-1733.
    • (1995) Biophys. J. , vol.69 , pp. 1721-1733
    • You, T.J.1    Bashford, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.