-
1
-
-
0034682564
-
Serine-53 at the tip of the glycine-rich loop of cAMP-dependent protein kinase: Role in catalysis, P-site specificity, and interaction with inhibitors
-
Aimes, R.T., Hemmer, W., and Taylor, S.S. 2000. Serine-53 at the tip of the glycine-rich loop of cAMP-dependent protein kinase: Role in catalysis, P-site specificity, and interaction with inhibitors. Biochemistry 39: 8325-8332.
-
(2000)
Biochemistry
, vol.39
, pp. 8325-8332
-
-
Aimes, R.T.1
Hemmer, W.2
Taylor, S.S.3
-
2
-
-
0033224309
-
The structural basis for specificity of substrate and recruitment peptides for cyclin-dependent kinases
-
Brown, N.R., Noble, M.E.M., Endicott, J.A., and Johnson, L.N. 1999. The structural basis for specificity of substrate and recruitment peptides for cyclin-dependent kinases. Nat. Cell Biol. 1: 438-443.
-
(1999)
Nat. Cell Biol.
, vol.1
, pp. 438-443
-
-
Brown, N.R.1
Noble, M.E.M.2
Endicott, J.A.3
Johnson, L.N.4
-
3
-
-
0004268506
-
-
University of California, San Francisco, CA
-
Case, D.A., Pearlman, D.A., Caldwell, J.W., Cheatham III, T.E., Ross, W.S., Simmerling, C.L., Darden, T.A., Merz, K.M., Stanton, R.V., Cheng, A.L., et al. 1999. AMBER 6. University of California, San Francisco, CA.
-
(1999)
AMBER 6
-
-
Case, D.A.1
Pearlman, D.A.2
Caldwell, J.W.3
Cheatham III, T.E.4
Ross, W.S.5
Simmerling, C.L.6
Darden, T.A.7
Merz, K.M.8
Stanton, R.V.9
Cheng, A.L.10
-
4
-
-
0032751695
-
Dephosphorylation of cyclin-dependent kinases by type 2C protein phosphatases
-
Cheng, A., Ross, K.E., Kaldis, P., and Solomon, M.J. 1999. Dephosphorylation of cyclin-dependent kinases by type 2C protein phosphatases. Genes Dev. 13: 2946-2957.
-
(1999)
Genes Dev.
, vol.13
, pp. 2946-2957
-
-
Cheng, A.1
Ross, K.E.2
Kaldis, P.3
Solomon, M.J.4
-
5
-
-
0034602268
-
Dephosphorylation of human cyclin-dependent kinases by protein phosphatase type 2C α and β 2 isoforms
-
Cheng, A., Kaldis, P., and Solomon, M.J. 2000. Dephosphorylation of human cyclin-dependent kinases by protein phosphatase type 2C α and β 2 isoforms. J. Biol. Chem. 275: 34744-34749.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 34744-34749
-
-
Cheng, A.1
Kaldis, P.2
Solomon, M.J.3
-
6
-
-
0142135133
-
Differential contribution of inhibitory phosphorylation of CDC2 and CDK2 for unperturbed cell cycle control and DNA integrity checkpoints
-
Chow, J.P., Siu, W.Y., Ho, H.T., Ma, K.H., Ho, C.C., and Poon, R.Y.C. 2003. Differential contribution of inhibitory phosphorylation of CDC2 and CDK2 for unperturbed cell cycle control and DNA integrity checkpoints. J. Biol. Chem. 278: 40815-40828.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 40815-40828
-
-
Chow, J.P.1
Siu, W.Y.2
Ho, H.T.3
Ma, K.H.4
Ho, C.C.5
Poon, R.Y.C.6
-
7
-
-
0037062580
-
Structural studies on phospho-CDK2/Cyclin A bound to nitrate, a transition state analogue: Implications for the protein kinase mechanism
-
Cook, A., Lowe, E.D., Chrysina, E.D., Skamnaki, V.T., Oikonomakos, N.G., and Johnson, L.N. 2002. Structural studies on phospho-CDK2/Cyclin A bound to nitrate, a transition state analogue: Implications for the protein kinase mechanism. Biochemistry 41: 7301-7311.
-
(2002)
Biochemistry
, vol.41
, pp. 7301-7311
-
-
Cook, A.1
Lowe, E.D.2
Chrysina, E.D.3
Skamnaki, V.T.4
Oikonomakos, N.G.5
Johnson, L.N.6
-
8
-
-
0029011701
-
A 2nd generation force-field for simulation of proteins, nucleic-acids and organic-molecules
-
Cornell, W.D., Cieplak, P., Bayly, C.I., Gould, I.R., Merz, J.K.M., Ferguson, D.M., Spellmeyer, D.C., Fox, T., Caldwell, J.W., and Kollman, P.A. 1995. A 2nd generation force-field for simulation of proteins, nucleic-acids and organic-molecules. J. Am. Chem. Soc. 117: 5179-5197.
-
(1995)
J. Am. Chem. Soc.
, vol.117
, pp. 5179-5197
-
-
Cornell, W.D.1
Cieplak, P.2
Bayly, C.I.3
Gould, I.R.4
Merz, J.K.M.5
Ferguson, D.M.6
Spellmeyer, D.C.7
Fox, T.8
Caldwell, J.W.9
Kollman, P.A.10
-
9
-
-
0346101798
-
Phosphorylations of cyclin-dependent kinase 2 revisited using two-dimensional gel electrophoresis
-
Coulonval, K., Bockstaele, L., Paternot, S., and Roger, P.P. 2003. Phosphorylations of cyclin-dependent kinase 2 revisited using two-dimensional gel electrophoresis. J. Biol. Chem. 278: 52052-52060.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 52052-52060
-
-
Coulonval, K.1
Bockstaele, L.2
Paternot, S.3
Roger, P.P.4
-
10
-
-
0027182223
-
Crystal structure of cyclin-dependent kinase 2
-
De Bondt, H.L., Rosenblatt, J., Jancarik, J., Jones, H.D., Morgan, D.O., and Kim, S.H. 1993. Crystal structure of cyclin-dependent kinase 2. Nature 363: 595-602.
-
(1993)
Nature
, vol.363
, pp. 595-602
-
-
De Bondt, H.L.1
Rosenblatt, J.2
Jancarik, J.3
Jones, H.D.4
Morgan, D.O.5
Kim, S.H.6
-
11
-
-
0032802393
-
Cyclin-dependent kinases: Inhibition and substrate recognition
-
Endicott, J.A., Noble, M.E.M., and Tucker, J.A. 1999. Cyclin-dependent kinases: Inhibition and substrate recognition. Curr. Opin. Struct. Biol. 9: 738-744.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 738-744
-
-
Endicott, J.A.1
Noble, M.E.M.2
Tucker, J.A.3
-
12
-
-
0004133516
-
-
Gaussian, Inc., Pittsburgh, PA
-
Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Zakrzewski, V.G., Montgomery, J.A., Stratmann, R.E., Burant, J.C., et al. 1998. Gaussian98. Gaussian, Inc., Pittsburgh, PA.
-
(1998)
Gaussian98
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Zakrzewski, V.G.7
Montgomery, J.A.8
Stratmann, R.E.9
Burant, J.C.10
-
13
-
-
0026713875
-
Cell cycle regulation of CDK2 activity by phosphorylation of Thr160 and Tyr15
-
Gu, Y., Rosenblatt, J., and Morgan, D.O. 1992. Cell cycle regulation of CDK2 activity by phosphorylation of Thr160 and Tyr15. EMBO J. 11: 3995-4005.
-
(1992)
EMBO J.
, vol.11
, pp. 3995-4005
-
-
Gu, Y.1
Rosenblatt, J.2
Morgan, D.O.3
-
14
-
-
0035808444
-
Kinetic basis for activation of CDK2/Cyclin A by phosphorylation
-
Hagopian, J.C., Kirtley, M.P., and Stevenson, L.M. 2001. Kinetic basis for activation of CDK2/Cyclin A by phosphorylation. J. Biol. Chem. 276: 275-280.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 275-280
-
-
Hagopian, J.C.1
Kirtley, M.P.2
Stevenson, L.M.3
-
15
-
-
0026345394
-
Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification of family members
-
Hanks, S. and Quinn, A.M. 1991. Protein kinase catalytic domain sequence database: Identification of conserved features of primary structure and classification of family members. Methods Enzymol. 200: 38-62.
-
(1991)
Methods Enzymol.
, vol.200
, pp. 38-62
-
-
Hanks, S.1
Quinn, A.M.2
-
16
-
-
0030859238
-
Role of the glycine triad in the ATP-binding site of cAMP-dependent protein kinase
-
Hemmer, W., McGlone, M., Tsigelny, I., and Taylor, S.S. 1997. Role of the glycine triad in the ATP-binding site of cAMP-dependent protein kinase. J. Biol. Chem. 272: 16946-16954.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 16946-16954
-
-
Hemmer, W.1
McGlone, M.2
Tsigelny, I.3
Taylor, S.S.4
-
17
-
-
0029819179
-
A predictive scale for evaluation cyclin-dependent kinase substrates. A comparison of p34cdc2 and p33cdk2
-
Holmes, J.K. and Solomon, M.J. 1996. A predictive scale for evaluation cyclin-dependent kinase substrates. A comparison of p34cdc2 and p33cdk2. J. Biol. Chem. 271: 25240-25246.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 25240-25246
-
-
Holmes, J.K.1
Solomon, M.J.2
-
18
-
-
0035724495
-
The role of Thr160 phosphorylation of Cdk2 in substrate recognition
-
-. 2001. The role of Thr160 phosphorylation of Cdk2 in substrate recognition. Eur. J. Biochem. 268: 4647-4652.
-
(2001)
Eur. J. Biochem.
, vol.268
, pp. 4647-4652
-
-
-
19
-
-
0029029617
-
Mechanism of cdk activation revealed by the structure of a cyclin A-cdk2 complex
-
Jeffrey, P.D., Russo, A.A., Polyak, K., Gibbs, E., Hurwitz, J., Massague, J., and Pavletich, N.P. 1995. Mechanism of cdk activation revealed by the structure of a cyclin A-cdk2 complex. Nature 376: 313-320.
-
(1995)
Nature
, vol.376
, pp. 313-320
-
-
Jeffrey, P.D.1
Russo, A.A.2
Polyak, K.3
Gibbs, E.4
Hurwitz, J.5
Massague, J.6
Pavletich, N.P.7
-
20
-
-
0033590627
-
Cell cycle start from quiescence controlled by tyrosine phosphorylation of Cdk4
-
Jinno, S., Hung, S.C., and Okayama, H. 1999. Cell cycle start from quiescence controlled by tyrosine phosphorylation of Cdk4. Oncogene 18: 565-571.
-
(1999)
Oncogene
, vol.18
, pp. 565-571
-
-
Jinno, S.1
Hung, S.C.2
Okayama, H.3
-
21
-
-
0035413607
-
Structural basis for control by phosphorylation
-
Johnson, L.N. and Lewis, R.J. 2001. Structural basis for control by phosphorylation. Chem. Rev. 101: 2209-2242.
-
(2001)
Chem. Rev.
, vol.101
, pp. 2209-2242
-
-
Johnson, L.N.1
Lewis, R.J.2
-
22
-
-
0035413608
-
Dynamics of cAMP-dependent protein kinase
-
Johnson, D.A., Akamine, P., Radzio-Andzelm, E., Madhusudan, and Taylor, S.S. 2001. Dynamics of cAMP-dependent protein kinase. Chem. Rev. 101: 2243-2270.
-
(2001)
Chem. Rev.
, vol.101
, pp. 2243-2270
-
-
Johnson, D.A.1
Akamine, P.2
Radzio-Andzelm, E.3
Madhusudan4
Taylor, S.S.5
-
23
-
-
0036710767
-
Pharmacological inhibitors of cyclin-dependent kinases
-
Knockaert, M., Greengard, P., and Meijer, L. 2002. Pharmacological inhibitors of cyclin-dependent kinases. Trends Pharmacol. Sci. 23: 417-425.
-
(2002)
Trends Pharmacol. Sci.
, vol.23
, pp. 417-425
-
-
Knockaert, M.1
Greengard, P.2
Meijer, L.3
-
24
-
-
0026590397
-
A graphics program for the analysis and display of molecular dynamics trajectories
-
Laaksonen, L. 1992. A graphics program for the analysis and display of molecular dynamics trajectories. J. Mol. Graph. 10: 33-34.
-
(1992)
J. Mol. Graph.
, vol.10
, pp. 33-34
-
-
Laaksonen, L.1
-
25
-
-
0037417767
-
MAP kinases and CDKs: Kinetic basis for catalytic activation
-
Lew, J. 2003. MAP kinases and CDKs: Kinetic basis for catalytic activation. Biochemistry 42: 849-856.
-
(2003)
Biochemistry
, vol.42
, pp. 849-856
-
-
Lew, J.1
-
26
-
-
0030561611
-
The dynamics of cyclin dependent kinase structure
-
Morgan, D.O. 1996. The dynamics of cyclin dependent kinase structure. Curr. Opin. Cell Biol. 8: 767-772.
-
(1996)
Curr. Opin. Cell Biol.
, vol.8
, pp. 767-772
-
-
Morgan, D.O.1
-
27
-
-
0031466305
-
Cyclin-dependent kinases: Engines, clocks, and microprocessors
-
-. 1997. Cyclin-dependent kinases: Engines, clocks, and microprocessors. Annu. Rev. Cell Dev. Biol. 13: 261-291.
-
(1997)
Annu. Rev. Cell Dev. Biol.
, vol.13
, pp. 261-291
-
-
-
28
-
-
0037189530
-
Kinetic mechanism of activation of the Cdk2/Cyclin A complex
-
Morris, M.C., Gondeau, C., Tainer, J.A., and Divita, G. 2002. Kinetic mechanism of activation of the Cdk2/Cyclin A complex. J. Biol. Chem. 277: 23847-23853.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 23847-23853
-
-
Morris, M.C.1
Gondeau, C.2
Tainer, J.A.3
Divita, G.4
-
29
-
-
1842866544
-
Dynamics and binding modes of free cdk2 and its two complexes with inhibitors studied by computer simulations
-
Otyepka, M., Kříž, Z., and Koča, J. 2002. Dynamics and binding modes of free cdk2 and its two complexes with inhibitors studied by computer simulations. J. Biomol. Struct. Dynam. 20: 141-154.
-
(2002)
J. Biomol. Struct. Dynam.
, vol.20
, pp. 141-154
-
-
Otyepka, M.1
Kříž, Z.2
Koča, J.3
-
30
-
-
0344942222
-
-
New York University School of Medicine, New York
-
Pagano, M. 1998. Cell cycle control. New York University School of Medicine, New York.
-
(1998)
Cell Cycle Control
-
-
Pagano, M.1
-
31
-
-
0029562951
-
Molecular dynamics simulation of E. coli ribonuclease H1 in solution: Correlation with NMR and X-ray data and insights into biological function
-
Philippopoulos, M. and Lim, C. 1995. Molecular dynamics simulation of E. coli ribonuclease H1 in solution: Correlation with NMR and X-ray data and insights into biological function. J. Mol. Biol. 254: 771-792.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 771-792
-
-
Philippopoulos, M.1
Lim, C.2
-
32
-
-
0028970682
-
Dephosphorylation of Cdk2 Thr160 by the cyclin-dependent kinase-interacting phosphatase KAP in the absence of cyclin
-
Poon, R.Y.C. and Hunter, T. 1995. Dephosphorylation of Cdk2 Thr160 by the cyclin-dependent kinase-interacting phosphatase KAP in the absence of cyclin. Science 270: 90-93.
-
(1995)
Science
, vol.270
, pp. 90-93
-
-
Poon, R.Y.C.1
Hunter, T.2
-
33
-
-
0035253383
-
Specifity of natural and artificial substrates for human CDC25A
-
Rudolph, J., Epstein, D.M., Parker, L., and Eckstein, J. 2001. Specifity of natural and artificial substrates for human CDC25A. Anal. Biochem. 289: 43-51.
-
(2001)
Anal. Biochem.
, vol.289
, pp. 43-51
-
-
Rudolph, J.1
Epstein, D.M.2
Parker, L.3
Eckstein, J.4
-
34
-
-
0029767016
-
Structural basis of cyclin-dependent kinase 2 activation by phosphorylation
-
Russo, A.A., Jeffrey, P.D., and Pavletich, N.P. 1996. Structural basis of cyclin-dependent kinase 2 activation by phosphorylation. Nat. Struct. Biol. 3: 696-700.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 696-700
-
-
Russo, A.A.1
Jeffrey, P.D.2
Pavletich, N.P.3
-
35
-
-
0029090514
-
Multiple modes of ligand recognition: Crystal structures of cyclin-dependent protein kinase 2 in complex with ATP and two inhibitors, olomoucine and isopenthenyladenine
-
Schulze-Gahmen, U., Brandsen, J., Jones, H.D., Morgan, D., Meijer, L., Veselý, J., and Kim, S.-H. 1995. Multiple modes of ligand recognition: Crystal structures of cyclin-dependent protein kinase 2 in complex with ATP and two inhibitors, olomoucine and isopenthenyladenine. Proteins 22: 378-391.
-
(1995)
Proteins
, vol.22
, pp. 378-391
-
-
Schulze-Gahmen, U.1
Brandsen, J.2
Jones, H.D.3
Morgan, D.4
Meijer, L.5
Veselý, J.6
Kim, S.-H.7
-
36
-
-
0027471557
-
Cdc25M2 activation of cyclin-dependent kinases by dephosphorylation of threonine-14 and tyrosine-15
-
Sebastian, B., Kakizuka, A., and Hunter, T. 1993. Cdc25M2 activation of cyclin-dependent kinases by dephosphorylation of threonine-14 and tyrosine-15. Proc. Natl. Acad. Sci. 90: 3521-3524.
-
(1993)
Proc. Natl. Acad. Sci.
, vol.90
, pp. 3521-3524
-
-
Sebastian, B.1
Kakizuka, A.2
Hunter, T.3
-
37
-
-
2442635978
-
-
University of Groningen, Groningen, The Netherlands
-
Spoel, D.V.D., Buuren, A.R.V., Apol, E., Meulenhoff, P.J., Tieleman, P.D., Sijbers, A.L.T.M., Hess, B., Feenstra, K.A., Lindhal, E., Drunen, R.V., et al. 1991-2002. GROMACS. University of Groningen, Groningen, The Netherlands.
-
(1991)
GROMACS
-
-
Spoel, D.V.D.1
Buuren, A.R.V.2
Apol, E.3
Meulenhoff, P.J.4
Tieleman, P.D.5
Sijbers, A.L.T.M.6
Hess, B.7
Feenstra, K.A.8
Lindhal, E.9
Drunen, R.V.10
-
38
-
-
0037007982
-
Activation mechanism of CDK2: Role of cyclin binding versus phosphorylation
-
Stevenson, L.M., Deal, M.S., Hagopian, J.C., and Lew, J. 2002. Activation mechanism of CDK2: Role of cyclin binding versus phosphorylation. Biochemistry 41: 8528-8534.
-
(2002)
Biochemistry
, vol.41
, pp. 8528-8534
-
-
Stevenson, L.M.1
Deal, M.S.2
Hagopian, J.C.3
Lew, J.4
-
39
-
-
0032847133
-
600 ps molecular dynamics reveals stable substructures and flexible hinge points in cAMP dependent protein kinase
-
Tsigelny, I., Greenberg, J.P., Cox, S., Nichols, W.L., Taylor, S.S., and Ten Eyck, L.F. 1999. 600 ps molecular dynamics reveals stable substructures and flexible hinge points in cAMP dependent protein kinase. Biopolymers 50: 513-524.
-
(1999)
Biopolymers
, vol.50
, pp. 513-524
-
-
Tsigelny, I.1
Greenberg, J.P.2
Cox, S.3
Nichols, W.L.4
Taylor, S.S.5
Ten Eyck, L.F.6
-
41
-
-
0001398008
-
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules?
-
Wang, J.M., Cieplak, P., and Kollman, P.A. 2000. How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21: 1049-1074.
-
(2000)
J. Comput. Chem.
, vol.21
, pp. 1049-1074
-
-
Wang, J.M.1
Cieplak, P.2
Kollman, P.A.3
-
42
-
-
0029048491
-
Regulation of the human WeelHu Cdk tyrosine 15-kinase during the cell cycle
-
Watanabe, N., Broome, M., and Hunter, T. 1995. Regulation of the human WeelHu Cdk tyrosine 15-kinase during the cell cycle. EMBO J. 14: 1878-1891.
-
(1995)
EMBO J.
, vol.14
, pp. 1878-1891
-
-
Watanabe, N.1
Broome, M.2
Hunter, T.3
-
43
-
-
0033710860
-
Cables links Cdk5 and c-Abl and facilitates Cdk5 tyrosine phosphorylation, kinase upregulation, and neurite outgrowth
-
Zukerberg, L.R., Patrick, G.N., Nikolic, M., Humbert, S., Wu, C.L., Lanier, L.M., Gertler, F.B., Vidal, M., Van Etten, R.A., and Tsai, L.H. 2000. Cables links Cdk5 and c-Abl and facilitates Cdk5 tyrosine phosphorylation, kinase upregulation, and neurite outgrowth. Neuron 26: 543-544.
-
(2000)
Neuron
, vol.26
, pp. 543-544
-
-
Zukerberg, L.R.1
Patrick, G.N.2
Nikolic, M.3
Humbert, S.4
Wu, C.L.5
Lanier, L.M.6
Gertler, F.B.7
Vidal, M.8
Van Etten, R.A.9
Tsai, L.H.10
|