Molecular models for repeat expansions

Chemtracts

Volumn 17, Issue 12, 2004, Pages 639-662

  Mirkin, Sergei M ^a  

^a UNIVERSITY OF ILLINOIS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANDROGEN RECEPTOR; ATROPHIN I; CYSTATIN B; FRAGILE X MENTAL RETARDATION PROTEIN; FRATAXIN; GENE PRODUCT; HUNTINGTIN; JUNCTOPHILIN 3; MYOTONIC DYSTROPHY PROTEIN KINASE; PHOSPHOPROTEIN PHOSPHATASE 2A; PROTEIN MSH2; PROTEIN MSH3; PROTEIN SCA8; PROTEIN ZNF9; REPETITIVE DNA; UNCLASSIFIED DRUG;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; AUTOSOMAL DOMINANT INHERITANCE; AUTOSOMAL RECESSIVE INHERITANCE; CHROMOSOME FRAGILITY; CONFERENCE PAPER; DENTATORUBROPALLIDOLUYSIAN ATROPHY; EXON; FRAGILE X SYNDROME; GENETIC RECOMBINATION; HEREDITY; HOLOPROSENCEPHALY; HUMAN; HUNTINGTON CHOREA; HYPOVENTILATION; INFANTILE SPASM; INTRON; MISMATCH REPAIR; MYOCLONUS EPILEPSY; MYOTONIC DYSTROPHY; NEUROLOGIC DISEASE; NEUROMUSCULAR DISEASE; OCULOPHARYNGEAL MUSCULAR DYSTROPHY; OPEN READING FRAME; PROMOTER REGION; SPINOCEREBELLAR DEGENERATION; X CHROMOSOME DOMINANT INHERITANCE; X CHROMOSOME RECESSIVE DISORDER;

EID: 23044497731     PISSN: 14319268     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (184)

1. Lenzmeier, B.A., Freudenreich, C.H. Cytogenet. Genome Res. 2003, 100.
2. Jin, P., Warren, S.T. Hum. Mol. Genet. 2000, 9, 901.
3. Parniewski, P., Staczek, P. Adv. Exp. Med. Biol. 2002, 516, 1.
4. Ranum, L.P., Day, J.W. Am. J. Hum. Genet. 2004, 74, 793.
5. Brown, L.Y., Brown, S.A. Trends Genet. 2004, 20, 51.
6. Cummings, C.J., Zoghbi, H.Y. Annu. Rev. Genom. Hum. Genet. 2000, 1, 281.
7. Bowater, R.P., Wells, R.D. Progr. Nucleic Acid Res. Mol. Biol. 2001, 66, 159.
8. Siyanova, E.Y., Mirkin, S.M. Mol. Biol (Mosc.) 2001, 35, 168.
9. Verkerk, A.J.M.H., Pieretti, M., Sutcliffe, J.S., et al. Cell 1991, 65, 905.
10. Kremer, E.J., Pritchard, M., Lynch, M., et al. Science 1991, 252, 1711.
11. The Huntington's Disease Collaborative Research Group. Cell 1993, 72, 971.
12. La Spada, A.R., Wilson, E.M., Lubahn, D.B., Harding, A.E., Fischbeck, K.H. Nature 1994, 352, 77.
13. Orr, H.T., Chung, M.Y., Banfi, S., et al. Nature Genet. 1993, 4, 221.
14. Chung, M.Y., Ranum, L.P., Duvick, L.A., Servadio, A., Zoghbi, H.Y., Orr, H.T. Nature Genet. 1993, 5, 254.
15. Koide, R., Ikeuchi, T., Onodera, O., et al. Nature Genet. 1994, 6, 9.
16. Mahadevan, M., Tsilfidis, C., Sabourin, L., et al. Science 1992, 255, 1253.
17. Brook, J.D., McCurrach, M.E., Harley, H.G., et al. Cell 1992, 68, 799.
18. Campuzano, V., Montermini, L., Molto, M.D., et al. Science 1996, 271, 1423.
19. Liquori, C.L., Ricker, K., Moseley, M.L., et al. Science 2001, 293, 864.
20. Matsuura, T., Yamagata, T., Burgess, D.L., et al. Nature Genet. 2000, 26, 191.
21. Lalioti, M.D., Scott, H.S., Buresi, C., et al. Nature 1997, 386, 847.
22. Fishel, R., Kolodner, R.D. Curr. Opin. Genet. Dev. 1995, 5, 382.
23. Kunst, C.B., Warren, S.T. Cell 1994, 77, 853.
24. Sherman, S.L., Jacobs, P.A., Morton, N.E., et al. Hum. Genet. 1985, 69, 289.
25. Sherman, S.L., Morton, N.E., Jacobs, P.A., Turner, G. Ann. Hum. Genet. 1984, 48, 21.
26. Howeler, C.J., Busch, H.F., Geraedts, J.P., Niermeier, M.F., Staal, A. Brain 1989, 112, 779.
27. Brooks, B.P., Fischbeck, K.H. Trends Neurosci. 1995, 18, 459.
28. Goldberg, Y.P., Telenius, H., Hayden, M.R. Curr. Opin. Neurol. 1994, 7, 325.
29. Pandolfo, M. Neuromuscul. Disord. 1998, 8, 409.
30. McMurray, C.T. Chromosoma 1995, 104, 2.
31. Lahue, R.S., Slater, D.L. Front Biosci. 2003, 8, 663.
32. Amiel, J., Trochet, D., Clement-Ziza, M., Munnich, A., Lyonnet, S. Hum. Mol. Genet. 2004, 13, R235.
33. Brown, L.Y., Brown, S.A. Trends Genet. 2004, 20, 51.
34. Kohwi, Y., Wang, H., Kohwi-Shigematsu, T. Nucleic Acids Res. 1993, 21, 5651.
35. Pearson, C.E., Sinden, R.R. Curr. Opin. Struct. Biol. 1998, 8, 321.
36. Pearson, C.E., Sinden, R.R. Biochemistry 1996, 35, 5041.
37. Mitchell, J.E., Newbury, S.F., McClellan, J.A. Nucleic Acids Res. 1995, 23, 1876.
38. Petruska, J., Arnheim, N., Goodman, M.F. Nucleic Acids Res. 1996, 24, 1992.
39. Yu, A., Dill, J., Wirth, S.S., Huang, G., Lee, V.H., Haworth, I.S., Mitas, M. Nucleic Acids Res. 1995, 23, 2706.
40. Yu, A., Barren, M.D., Romero, R.M., et al. Biochemistry 1997, 36, 3687.
41. Zheng, M., Huang, X., Smith, G.K., Yang, X., Gao, X. J. Mol. Biol. 1996, 264, 323.
42. Gacy, A.M., Goellner, G., Juranic, N., Macura, S., McMurray, C.T. Cell 1995, 81, 533.
43. Chen, X., Mariappan, S.V., Catasti, P., et al. Proc. Natl. Acad. Sci. USA 1995, 92, 5199.
44. Mariappan, S.V., Silks, L.A., III, Chen, X., et al. J. Biomol. Struct. Dyn. 1998, 15, 723.
45. Heidenfelder, B.L., Makhov, A.M., Topal, M.D. J. Biol. Chem. 2003, 278, 2425.
46. Usdin, K. Nucleic Acids Res. 1998, 26, 4078.
47. Mirkin, S.M., Frank-Kamenetskii, M.D. Annu. Rev. Biophys. Biomol. Struct. 1994, 23, 541.
48. Gacy, A.M., Goellner, G.M., Spiro, C., et al. Mol. Cell 1998, 1, 583.
49. Sakamoto, N., Chastain, P.D., Parniewski, P., et al. Mol. Cell 1999, 3, 465.
50. Vetcher, A.A., Napierala, M., Iyer, R.R., Chastain, P.D., Griffith, J.D., Wells, R.D. J. Biol. Chem. 2002, 277, 39217.
51. Potaman, V.N., Bissler, J.J., Hashem, V.I., et al. J. Mol. Biol. 2003, 326, 1095.
52. Pearson, C.E., Eichler, E.E., Lorenzetti, D., et al. Biochemistry 1998, 37, 2701.
53. McMurray, C.T. Proc. Natl. Acad. Sci. USA 1999, 96, 1823.
54. Bedinger, P., Munn, M., Alberts, B.M. J. Biol Chem. 1989, 264, 16880.
55. Kaguni, L.S., Clayton, D.A. Proc. Natl. Acad. Sci. USA 1982, 79, 983.
56. Weaver, D.T., DePamphilis, M.L. J. Biol. Chem. 1982, 257, 2075.
57. Huang, C.C., Hearst, J.E. Anal. Biochem. 1980, 103, 127.
58. Chalberg, M.D., Englund, P.T. J. Biol Chem. 1979, 254, 7820.
59. Sherman, L.A., Gefter, M.L. J. Mol. Biol. 1976, 103, 61.
60. Samadashwily, G.M., Dayn, A., Mirkin, S.M. EMBO J. 1993, 12, 4975.
61. Dayn, A., Samadashwily, G.M., Mirkin, S.M. Proc. Natl. Acad. Sci. USA 1992, 89, 11406.
62. Krasilnikov, A.S., Panyutin, I.G., Samadashwily, G.M., Cox, R., Lazurkin, Y.S., Mirkin, S.M. Nucleic Acids Res. 1997, 25, 1339.
63. Baran, N., Lapidot, A., Manor, H. Proc. Natl. Acad. Sci. USA 1991, 88, 507.
64. Woodford, K.J., Howell, R.M., Usdin, K. J. Biol. Chem. 1994, 269, 27029.
65. Weitzmann, M.N., Woodford, K.J., Usdin, K. J. Biol Chem. 1997, 272, 9517.
66. Usdin, K., Woodford, K.J. Nucleic Acids Res. 1995, 23, 4202.
67. Kohwi, Y., Panchenko, Y. Genes Dev. 1993, 7, 1766.
68. Rooney, S.M., Moore, P.D. Proc. Natl. Acad. Sci. USA 1995, 92, 2141.
69. Wahls, W.P., Wallace, L.J., Moore, P.D. Mol. Cell. Biol. 1990, 10, 785.
70. Weinreb, A., Collier, D.A., Birshtein, B.K., Wells, R.D. J. Biol Chem. 1990, 265, 1352.
71. Wahls, W.P., Wallace, L., Moore, P.D. Cell 1990, 60, 95.
72. Sinden, R.R. DNA Structure and Function. Academic Press: San Diego, 1994.
73. Paiva, A.M., Sheardy, R.D. Biochemistry 2004, 43, 14218.
74. DePamphilis, M.L., Wassarman, P.M. Annu. Rev. Biochem. 1980, 49, 627.
75. DePamphilis, M.L. Chemtracts - Biochem. Mol. Biol. 2002, 15, 313.
76. Wold, M.S. Annu. Rev. Biochem. 1997, 66, 61.
77. Frick, D.N., Richardson, C.C. Annu. Rev. Biochem. 2001, 70, 39.
78. Krasilnikova, M.M., Mirkin, S.M. Mol. Cell Biol. 2004, 24, 2286.
79. Kang, S., Jaworski, A., Ohshima, K., Wells, R.D. Nature Genet. 1995, 10, 213.
80. Kang, S., Ohshima, K., Shimizu, M., Amirhaeri, S., Wells, R.D. J. Biol. Chem. 1995, 270, 27014.
81. Ohshima, K., Wells, R.D. J. Biol. Chem. 1997, 272, 16798.
82. Shimizu, M., Gellibolian, R., Oostra, B.A., Wells, R.D. J. Mol. Biol. 1996, 258, 614.
83. Freudenreich, C.H., Stavenhagen, J.B., Zakian, V.A. Mol. Cell Biol. 1997, 17, 2090.
84. Miret, J.J., Pessoa-Brandao, L., Lahue, R.S. Proc. Natl. Acad. Sci. USA 1998, 95, 12438.
85. Balakumaran, B.S., Freudenreich, C.H., Zakian, V.A. Hum. Mol. Genet. 2000, 9, 93.
86. Cleary, J.D., Nichol, K., Wang, Y.H., Pearson, C.E. Nature Genet. 2002, 31, 37.
87. Panigrahi, G.B., Cleary, J.D., Pearson, C.E. J. Biol. Chem. 2002, 277, 13926.
88. Iyer, R.R., Wells, R.D. J. Biol. Chem. 1999, 274, 3865.
89. Freudenreich, C.H., Kantrow, S.M., Zakian, V.A. Science 1998, 279, 853.
90. Schweitzer, J.K., Livingston, D.M. Hum. Mol. Genet. 1998, 7, 69.
91. Schweitzer, J.K., Livingston, D.M. Genetics 1999, 152, 953.
92. Spiro, C., Pelletier, R., Rolfsmeier, M.L., et al. Mol. Cell 1999, 4, 1079.
93. White, P.J., Borts, R.H., Hirst, M.C. Mol. Cell Biol. 1999, 19, 5675.
94. Ireland, M.J., Reinke, S.S., Livingston, D.M. Genetics 2000, 155, 1657.
95. Iyer, R.R., Pluciennik, A., Rosche, W.A., Sinden, R.R., Wells, R.D. J. Biol. Chem. 2000, 275, 2174.
96. Liu, Y., Kao, H.I., Bambara, R.A. Annu. Rev. Biochem. 2004, 73, 589.
97. Gordenin, D.A., Kunkel, T.A., Resnick, M.A. Nature Genet. 1997, 16, 116.
98. Lee, S., Park, M.S. Exp. Mol. Med. 2002, 34, 313.
99. Veeraraghavan, J., Rossi, M.L., Bambara, R.A. J. Biol. Chem. 2003, 278, 42854.
100. Henricksen, L.A., Tom, S., Liu, Y., Bambara, R.A. J. Biol. Chem. 2000, 275, 16420.
101. Kokoska, R.J., Stefanovic, L., Tran, H.T., Resnick, M.A., Gordenin, D.A., Petes, T.D. Mol. Cell Biol. 1998, 18, 2779.
102. Parenteau, J., Wellinger, R.J. Mol. Cell Biol. 1999, 19, 4143.
103. Bhattacharyya, S., Lahue, R.S. Mol. Cell Biol. 2004, 24, 7324.
104. Pelletier, R., Krasilnikova, M.M., Samadashwily, G.M., Lahue, R.S., Mirkin, S.M. Mol. Cell Biol. 2003, 23, 1349.
105. Beckwith, W.H., Sun, Q., Bosso, R., Gerik, K.J., Burgers, P.M.J., McAlear, M.A. Biochemistry 1998, 37, 3711.
106. Mossi, R., Hubscher, V. Eur. J. Biochem. 1998, 254, 209.
107. Barbour, L., Xiao, W. Mutat. Res. 2003, 532(1-2), 137.
108. Samadashwily, G.M., Raca, G., Mirkin, S.M. Nature Genet. 1997, 17, 298.
109. Brewer, B.J., Fangman, W.L. Cell 1987, 51, 463.
110. Huberman, J.A., Spotila, L.D., Nawotka, K.A., El-Assouli, S.M., Davis, L.R. Cell 1987, 51, 473.
111. Cleary, J.D., Pearson, C.E. Trends Genet. 2005, 272.
112. Usdin, K., Grabczyk, E. Cell Mol. Life Sci. 2000, 57, 914.
113. Marians, K.J. Phil. Trans. R. Soc. Lond. B Biol. Sci. 2004, 359, 71.
114. Radman, M., Matic, I., Halliday, J.A., Taddei, F. Phil. Trans. R. Soc. Lond. B Biol. Sci. 1995, 347, 97.
115. Hashem, V.I., Rosche, W.A., Sinden, R.R. Mutat. Res. 2002, 502, 25.
116. Wells, R.D., Parniewski, P., Pluciennik, A., Bacolla, A., Gellibolian, R., Jaworski, A. J. Biol. Chem. 1998, 273, 19532.
117. Parniewski, P., Jaworski, A., Wells, R.D., Bowater, R.P. J. Mol. Biol. 2000, 299, 865.
118. Schweitzer, J.K., Livingston, D.M. Hum. Mol. Genet. 1997, 6, 349.
119. Schmidt, K.H., Abbott, C.M., Leach, D.R. Mol. Microbiol. 2000, 35, 463.
120. Moore, H., Greenwell, P.W., Liu, C.P., Arnheim, N., Petes, T.D. Proc. Natl. Acad. Sci. USA 1999, 96, 1504.
121. Savouret, C., Brisson, E., Essers, J., et al. EMBO J. 2003, 22, 2264.
122. Manley, K., Shirley, T.L., Flaherty, L. Nature Genet. 1999, 23, 471.
123. van den Broek, W.J., Nelen, M.R., Wansink, et al. Hum. Mol. Genet. 2002, 11, 191.
124. Kovtun, I.V., McMurray, C.T. Nature Genet. 2001, 27, 407.
125. Modrich, P., Lahue, R. Annu. Rev. Biochem. 1996, 65, 101.
126. Pearson, C.E., Ewel, A., Acharya, S., Fishel, R.A., Sinden, R.R. Hum. Mol. Genet. 1991, 6, 1117.
127. Owen, B., Badger, J.D., II, Yang, Z., et al. Nature Struct. Mol. Biol. 2005, in press.
128. Modrich, P. J. Biol. Chem. 1997, 272, 24727.
129. Richardson, L.L., Pedigo, C., Ann Handel, M. Biol. Reprod. 2000, 62, 789.
130. Bocker, T., Barusevicius, A., Snowden, T., et al. Cancer Res. 1999, 59, 816.
131. Pearson, C.E. Trends Mol. Med. 2003, 9, 490.
132. Zhang, L., Leeflang, E.P., Yu, J., Arnheim, N. Nature Genet. 1994, 7, 531.
133. Telenius, H., Kremer, B., Goldberg, Y.P., et al. Nature Genet. 1994, 6, 409.
134. Duyao, M., Ambrose, C., Myers, R., et al. Nature Genet. 1993, 4, 387.
135. Wohrle, D., Hennig, I., Vogel, W., Steinbach, P. Nature Genet. 1993, 4, 140.
136. Jansen, G., Willems, P., Coerwinkel, M., et al. Am. J. Hum. Genet. 1994, 54, 575.
137. MacDonald, M.E., Barnes, G., Srinidhi, J., et al. J. Med. Genet. 1993, 30, 982.
138. Leeflang, E.P., Tavare, S., Marjoram, P., et al. Hum. Mol. Genet. 1999, 8, 173.
139. Yoon, S.R., Dubeau, L., de Young, M., Wexler, N.S., Arnheim, N. Proc. Natl. Acad. Sci. USA 2003, 100, 8834.
140. Savouret, C., Garcia-Cordier, C., Megret, J., te Riele, H., Junien, C., Gourdon, G. Mol. Cell Biol. 2004, 24, 629.
141. Anvret, M., Ahlberg, G., Grandell, U., Hedberg, B., Johnson, K., Edstrorn, L. Hum. Mol. Genet. 1993, 2, 1397.
142. Thornton, C.A., Johnson, K., Moxley, R.T. Ann. Neuro 1994, 35, 104.
143. Kennedy, L., Evans, E., Chen, C.M., et al. Hum. Mol. Genet. 2003, 12, 3359.
144. Lia, A.S., Seznec, H., Hofmann-Radvanyi, H., et al. Hum. Mol. Genet. 1998, 7, 1285.
145. Fortune, M.T., Vassilopoulos, C., Coolbaugh, M.I., Siciliano, M.J., Monckton, D.G. Hum. Mol. Genet. 2000, 9, 439.
146. Warren, S.T. Science 1997, 275, 408.
147. Richards, R.I., Holman, K., Friend, K., et al. Nature Genet. 1992, 1, 257.
148. Schweitzer, J.K., Reinke, S.S., Livingston, D.M. Genetics 2001, 159, 1861.
149. Jankowski, C., Nasar, F., Nag, D.K. Proc. Natl. Acad. Sci. USA 2000, 97, 2134.
150. Paques, F., Haber, J.E. Microb. Mol. Biol. Rev. 1999, 63, 349.
151. Napierala, M., Dere, R., Vetcher, A., Wells, R.D. J. Biol. Chem. 2004, 279, 6444.
152. Jakupciak, J.P., Wells, R.D. J. Biol. Chem. 2000, 275, 40003.
153. Jakupciak, J.P., Wells, R.D. J. Biol. Chem. 1999, 274, 23468.
154. Richard, G.-F., Goellner, G.M., McMurray, C.T., Haber, J.E. EMBO J. 2000, 19, 2381.
155. Richard, G.F., Cyncynatus, C., Dujon, B. J. Mol. Biol. 2003, 326, 769.
156. Nag, D.K., Suri, M., Stenson, E.K. Nucleic Acids Res. 2004, 32, 5677.
157. Meservy, J.L., Sargent, R.G., Iyer, R.R., et al. Mol. Cell Biol. 2003, 23, 3152.
158. McGlynn, P., Lloyd, R.G. Nature Rev. Mol. Cell Biol. 2002, 3, 859.
159. Michel, B., Grompone, G., Flores, M.J., Bidnenko, V. Proc. Natl. Acad. Sci. USA 2004, 101, 12783.
160. Cox, M.M. Annu. Rev. Genet. 2001, 35, 53.
161. Hebert, M.L., Spitz, L.A., Wells, R.D. J. Mol. Biol. 2004, 336, 655.
162. Higgins, N.P., Kato, K., Strauss, B. J. Mol. Biol. 1976, 101, 417.
163. Postow, L., Ullsperger, C., Keller, R.W., Bustamante, C., Vologodskii, A.V., Cozzarelli, N.R. J. Biol. Chem. 2001, 276, 2790.
164. Cleary, J.D., Pearson, C.E. Cytogenet. Genome Res. 2003, 100, 25.
165. Reiss, A.L., Kazazian, H., Jr., Krebs, C.M., et al. Hum. Mol. Genet. 1994, 3, 393.
166. Snow, K., Tester, D.J., Kruckeberg, K.E., Schaid, D.J., Thibodeau, S.N. Hum. Mol. Genet. 1994, 3, 1543.
167. Jodice, C., Malaspina, P., Persichetti, F., et al. Am. J. Hum. Genet. 1994, 54, 959.
168. Labuda, M., Labuda, D., Miranda, C., et al. Neurology 2000, 54, 2322.
169. Cossee, M., Schmitt, M., Campuzano, V., et al. Proc. Natl. Acad. Sci. USA 1997, 94, 7452.
170. Rolfsmeier, M.L., Lahue, R.S. Mol. Cell Biol. 2000, 20, 173.
171. Sinden, R.R., Hashem, V.I., Rosche, W.A. Ann. NY Acad. Sci. 1999, 870, 173.
172. Trinh, T.Q., Sinden, R.R. Nature 1991, 352, 544.
173. Rosche, W.A., Trinh, T.Q., Sinden, R.R. J. Bacteriol. 1995, 177, 4385.
174. Mirkin, S.M., Smirnova, E.V. Nature Genet. 2002, 31, 5.
175. Neville, C.E., Mahadevan, M.S., Barcelo, J.M., Korneluk, R.G. Hum. Mol. Genet. 1994, 3, 45.
176. Nenguke, T., Aladjem, M.I., Gusella, J.F., Wexler, N.S. Hum. Mol. Genet. 2003, 12, 1021.
177. Rolfsmeier, M.L., Dixon, M.J., Lahue, R.S. Mol. Cell 2000, 6, 1501.
178. Handt, O., Sutherland, G.R., Richards, R.I. Mol. Genet. Metab. 2000, 70, 99.
179. Matsuyama, A., Croce, C.M., Huebner, K. Eur. J. Histochem. 2004, 48, 29.
180. Hansen, R.S., Canfield, T.K., Lamb, M.M., Gartler, S.M., Laird, C.D. Cell 1993, 73, 1403.
181. Hansen, R.S., Canfield, T.K., Fjeld, A.D., Mumm, S., Laird, C.D., Gartler, S.M. Proc. Natl. Acad. Sci. USA 1997, 94, 4587.
182. Hansen, R.S., Canfield, T.K., Lamb, M.M., Gartler, S.M., Laird, C.D. Cell 1993, 73, 1403.
183. Lahiri, M., Gustafson, T.L., Majors, E.R., Freudenreich, C.H. Mol. Cell 2004, 15, 287.
184. Freudenreich, C.H., Lahiri, M. Cell Cycle 2004, 3, 1370.