Structure-dependent Recombination Hot Spot Activity of GAA·TTC Sequences from Intron 1 of the Friedreich's Ataxia Gene

Journal of Biological Chemistry

Volumn 279, Issue 8, 2004, Pages 6444-6454

  Napierala, Marek ^a   Dere, Ruhee ^a   Vetcher, Alexandre ^a,b   Wells, Robert D ^a  

^a TEXAS A AND M HEALTH SCIENCE CENTER   (United States)

^b UNIVERSITY OF TEXAS AT DALLAS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; DNA; ESCHERICHIA COLI; GENES; MOLECULAR STRUCTURE;

GENETIC INSTABILITY; INTERMOLECULAR RECOMBINATION;

BIOCHEMISTRY;

MICROSATELLITE DNA;

ARTICLE; DMPK GENE; DNA CONFORMATION; FRIEDREICH ATAXIA; GENE; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC RECOMBINATION; GENETIC STABILITY; GFP GENE; INTRON; MOLECULAR INTERACTION; MOLECULAR MECHANICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; STRUCTURE ACTIVITY RELATION; TANDEM REPEAT;

ADAPTOR PROTEINS, SIGNAL TRANSDUCING; DNA; ESCHERICHIA COLI; FRIEDREICH ATAXIA; HUMANS; INTRONS; NERVE TISSUE PROTEINS; NUCLEIC ACID CONFORMATION; PLASMIDS; POLYMORPHISM, GENETIC; PROTEIN CONFORMATION; RECOMBINATION, GENETIC; TRINUCLEOTIDE REPEATS;

ATAXIA; ESCHERICHIA COLI;

EID: 1342325427     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M309596200     Document Type: Article

References (76)

1. Weber, J. L., and Wong, C. (1993) Hum. Mol. Genet. 2, 1123-1128
2. Hearne, C. M., Ghosh, S., and Todd, J. A. (1992) Trends Genet. 8, 288-294
3. Subramanian, S., Madgula, V. M., George, R., Mishra, R. K., Pandit, M. W., Kumar, C. S., and Singh, L. (2003) Bioinformatics 19, 549-552
4. Subramanian, S., Mishra, R. K., and Singh, L. (2003) Genome Biol. 4, R13
5. Chauhan, C., Dash, D., Grover, D., Rajamani, J., and Mukerji, M. (2002) J. Biomol. Struct. Dyn. 20, 253-263
6. Soyfer, V. N., and Potaman, V. N. (1996) Triple-helical Nucleic Acids, Springer-Verlag, New York
7. Liu, L., Dybvig, K., Panangala, V. S., van Santen, V. L., and French, C. T. (2000) Infect. Immun. 68, 871-876
8. Glew, M. D., Baseggio, N., Markham, P. F., Browning, G. F., and Walker, I. D. (1998) Infect. Immun. 66, 5833-5841
9. Campuzano, V., Montermini, L., Molto, M. D., Pianese, L., Cossee, M., Cavalcanti, F., Monros, E., Rodius, F., Duclos, F., Monticelli, A., Zara, F., Canizares, J., Koutnikova, H., Bidichandani, S. I., Gellera, C., Brice, A., Trouillas, P., De Michele, G., Filla, A., De Frutos, R., Palau, F., Patel, P. I., De Donato, S., Mandel, J. L., Cocozza, S., Koenig, M., and Pandolfo, M. (1996) Science 271, 1423-1427
10. Wells, R. D., and Warren, S. T. (eds) (1998) Genetic Instabilities and Hereditary Neurological Diseases, Academic Press, San Diego
11. Ohshima, K., Montermini, L., Wells, R. D., and Pandolfo, M. (1998) J. Biol. Chem. 275, 14588-14595
12. Grabczyk, E., and Usdin, K. (2000) Nucleic Acids Res. 28, 2815-2822
13. Bidichandani, S. I., Ashizawa, T., and Patel, P. I. (1998) Am. J. Hum. Genet. 62, 111-121
14. Ohshima, K., Kang, S., Larson, J. E., and Wells, R. D. (1996) J. Biol. Chem. 271, 16773-16783
15. Sakamoto, N., Chastain, P. D., Parniewski, P., Ohshima, K., Pandolfo, M., Griffith, J. D., and Wells, R. D. (1999) Mol. Cell 3, 465-475
16. Sakamoto, N., Larson, J. E., Iyer, R. R., Montermini, L., Pandolfo, M., and Wells, R. D. (2001) J. Biol. Chem. 26, 27178-27187
17. Sakamoto, N., Ohshima, K., Montermini, L., Pandolfo, M., and Wells, R. D. (2001) J. Biol. Chem. 276, 27171-27177
18. Vetcher, A. A., Napierala, M., Iyer, R. R., Chastain, P. D., Griffith, J. D., and Wells, R. D. (2002) J. Biol. Chem. 277, 39217-39227
19. Vetcher, A. A., Napierala, M., and Wells, R. D. (2002) J. Biol. Chem. 277, 39228-39234
20. Vetcher, A. A., and Wells, R. D. (2003) J. Biol. Chem. 278, 6434-6443
21. Freudenreich, C. H., Kantrow, S. M., and Zakian, V. A. (1998) Science 279, 853-856
22. Jankowski, C., Nasar, F., and Nag, D. K. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 2134-2139
23. Richard, G. F., Goellner, G. M., McMurray, C. T., and Haber, J. E. (2000) EMBO J. 19, 2381-2390
24. Richard, G. F., Dujon, B., and Haber, J. E. (1999) Mol. Gen. Genet. 261, 871-882
25. Marcadier, J. L., and Pearson, C. E. (2003) J. Biol. Chem. 278, 33848-33856
26. Meservy, J. L., Sargent, R. G., Iyer, R. R., Chan, F., McKenzie, G. J., Wells, R. D., and Wilson, J. H. (2003) Mol. Cell. Biol. 23, 3152-3162
27. Jakupciak, J. P., and Wells, R. D. (2000) J. Biol. Chem. 275, 40003-40013
28. Jakupciak, J. P., and Wells, R. D. (1999) J. Biol. Chem. 274, 23468-23479
29. Napierala, M., Parniewski, P., Pluciennik, A., and Wells, R. D. (2002) J. Biol. Chem. 277, 34087-34100
30. Pluciennik, A., Iyer, R. R., Napierala, M., Larson, J. E., Filutowicz, M., and Wells, R. D. (2002) J. Biol. Chem. 277, 34074-34086
31. Jakupciak, J. P., and Wells, R. D. (2000) IUBMB Life 50, 355-359
32. Weinreb, A., Collier, D. A., Birshtein, B. K., and Wells, R. D. (1990) J. Biol. Chem. 265, 1352-1359
33. Wells, R. D., Collier, D. A., Hanvey, J. C., Shimizu, M., and Wohlrab, F. (1988) FASEB J. 2, 2939-2949
34. Rooney, S. M., and Moore, P. D. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 2141-2144
35. Benet, A., and Azorin, F. (1999) J. Mol. Biol. 294, 851-857
36. Benet, A., Molla, G., and Azorin, F. (2000) Nucleic Acids Res. 28, 4617-4622
37. Ohshima, K., Sakamoto, N., Labuda, M., Poirier, J., Moseley, M. L., Montermini, L., Ranum, L. P., Wells, R. D., and Pandolfo, M. (1999) Neurology 53, 1854-1857
38. Kruger, R., and Filutowicz, M. (2000) J. Bacteriol. 182, 2461-2467
39. Lewis, R. J., Singh, O. M., Smith, C. V., Skarzynski, T., Maxwell, A., Wonacott, A. J., and Wigley, D. B. (1996) EMBO J. 15, 1412-1420
40. Tsai, F. T., Singh, O. M., Skarzynski, T., Wonacott, A. J., Weston, S., Tucker, A., Pauptit, R. A., Breeze, A. L., Poyser, J. P., O'Brien, R., Ladbury, J. E., and Wigley, D. B. (1997) Proteins 28, 41-52
41. Bacolla, A., Jaworski, A., Connors, T. D., and Wells, R. D. (2001) J. Biol. Chem. 276, 18597-18604
42. Chen, C. R., Malik, M., Snyder, M., and Drlica, K. (1996) J. Mol. Biol. 258, 627-637
43. Hiasa, H., Yousef, D. O., and Marians, K. J. (1996) J. Biol. Chem. 271, 26424-26429
44. Howard, M. T., Neece, S. H., Matson, S. W., and Kreuzer, K. N. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 12031-12035
45. Hardy, C. D., and Cozzarelli, N. R. (2003) Antimicrob. Agents Chemother. 47, 941-947
46. Pluciennik, A., Iyer, R. R., Parniewski, P., and Wells, R. D. (2000) J. Biol. Chem. 275, 28386-28397
47. Shimizu, M., Gellibolian, R., Oostra, B. A., and Wells, R. D. (1996) J. Mol. Biol. 258, 614-626
48. Freudenreich, C. H., Stavenhagen, J. B., and Zakian, V. A. (1997) Mol. Cell. Biol. 17, 2090-2098
49. Kang, S., Jaworski, A., Ohshima, K., and Wells, R. D. (1995) Nat. Genet. 10, 213-218
50. Maurer, D. J., O'Callaghan, B. L., and Livingston, D. M. (1996) Mol. Cell. Biol. 16, 6617-6622
51. Bowater, R. P., Rosche, W. A., Jaworski, A., Sinden, R. R., and Wells, R. D. (1996) J. Mol. Biol. 264, 82-96
52. Wells, R. D., Parniewski, P., Pluciennik, A., Bacolla, A., Gellibolian, R., and Jaworski, A. (1998) J. Biol. Chem. 273, 19532-19541
53. Mariappan, S. V., Catasti, P., Silks, L. A., III, Bradbury, E. M., and Gupta, G. (1999) J. Mol. Biol. 285, 2035-2052
54. Mariappan, S. V. S., Chen, X., Catasti, P., Bradbury, E. M., and Gupta, G. (1998) in Genetic Instabilities and Hereditary Neurological Diseases (Wells, R. D., and Warren, S. T., eds) pp. 647-676, Academic Press, San Diego, CA
55. LeProust, E. M., Pearson, C. E., Sinden, R. R., and Gao, X. (2000) J. Mol. Biol. 302, 1063-1080
56. Treco, D., and Arnheim, N. (1986) Mol. Cell. Biol. 6, 3934-3947
57. Blaho, J. A., and Wells, R. D. (1989) Prog. Nucleic Acids Res. Mol. Biol. 37, 107-126
58. Wahls, W. P., Wallace, L. J., and Moore, P. D. (1990) Cell 60, 95-103
59. Dutreix, M. (1997) J. Mol. Biol. 272, 105-113
60. Gendrel, C. G., Boulet, A., and Dutreix, M. (2000) Genes Dev. 14, 1261-1268
61. Palecek, E. (1991) Crit. Rev. Biochem. Mol. Biol. 26, 151-226
62. Boan, F., Rodriguez, J. M., and Gomez-Marquez, J. (1998) J. Mol. Biol. 278, 499-505
63. Kohwi, Y., and Panchenko, Y. (1993) Genes Dev. 7, 1766-1778
64. Kuzminov, A. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 8241-8246
65. Haber, J. E. (1999) Trends Biochem. Sci. 24, 271-275
66. Kang, S., Ohshima, K., Shimizu, M., Amirhaeri, S., and Wells, R. D. (1995) J. Biol. Chem. 270, 27014-27021
67. Lapidot, A., Baran, N., and Manor, H. (1989) Nucleic Acids Res. 17, 883-900
68. Cox, M. M. (1998) Genes Cells 3, 65-78
69. Michel, B., Flores, M. J., Viguera, E., Grompone, G., Seigneur, M., and Bidnenko, V. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 8181-8188
70. Lovett, S. T., and Feschenko, V. V. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 7120-7124
71. Rubnitz, J., and Subramani, S. (1984) Mol. Cell. Biol. 4, 2253-2258
72. Watt, V. M., Ingles, C. J., Urdea, M. S., and Rutter, W. J. (1985) Proc. Natl. Acad. Sci. U. S. A. 82, 4768-4772
73. Kirkpatrick, D. T., Wang, Y. H., Dominska, M., Griffith, J. D., and Petes, T. D. (1999) Mol. Cell. Biol. 19, 7661-7671
74. Petes, T. D. (2001) Nat. Rev. Genet. 2, 360-369
75. Campuzano, V., Montermini, L., Lutz, Y., Cova, L., Hindelang, C., Jiralerspong, S., Trottier, Y., Kish, S. J., Faucheux, B., Trouillas, P., Authier, F. J., Durr, A., Mandel, J. L., Vescovi, A., Pandolfo, M., and Koenig, M. (1997) Hum. Mol. Genet. 6, 1771-1780
76. Cossee, M., Campuzano, V., Koutnikova, H., Fischbeck, K., Mandel, J. L., Koenig, M., Bidichandani, S. I., Patel, P. I., Molte, M. D., Canizares, J., De Frutos, R., Pianese, L., Cavalcanti, F., Monticelli, A., Cocozza, S., Montermini, L., and Pandolfo, M. (1997) Nat. Genet. 15, 337-338