Solution structures of the huntington's disease dna triplets, (cag)n

Journal of Biomolecular Structure and Dynamics

Volumn 15, Issue 4, 1998, Pages 723-744

  Santhana Mariappan, S V ^a   Silks, Louis A ^b   Chen, Xian ^a,c   Springer, Penelope A ^b   Wu, Ruilian ^b   Moyzis, Robert K ^d   Bradbury, E Morton ^a,e   Garcia, Angel E ^a   Gupta, Goutam ^a  

^a Theoretical Biology and Biophysics   (United States)

^b The National Stable Isotope Resource   (United States)

^c Life Sciences Division   (United States)

^d LOS ALAMOS NATIONAL LABORATORY   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; REPETITIVE DNA;

ARTICLE; BASE MISPAIRING; DNA CONFORMATION; DNA REPLICATION; GEL ELECTROPHORESIS; HUNTINGTON CHOREA; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; TRIPLE HELIX;

DNA; DNA REPLICATION; HUNTINGTON DISEASE; MODELS, MOLECULAR; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; TRINUCLEOTIDE REPEATS;

EID: 0031953014     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1998.10508988     Document Type: Article

References (50)

1. Moyzis, R. K., Torney, D. C., Meyne, J., Buckingham, J. M., Wu, J., Burks, C., Sirotkin, K. M., and Goad, W. B., 1989. Genomics, 4:273–289.
2. Stallings, R., 1994. Genomics, 21:116–121.
3. Ricke, D. O., Liu, Q., Gostout, B., and Sommer, S. S., 1995. Genomics, 26:510–520.
4. Ross, C. A., Mclnnis, M. G., Morgolis, R. L., and Li, S-H., 1993. Trends Neurosci., 16:254–260.
5. Kremer, E. J., Pritchard, M., Lynch, M., Yu, S., Holman, K., Baker, E., Warren, S. T., Schlessinger, D., Sutherland, G. R., and Richards, R. I., 1991. Science, 252:1711–1714.
6. Fu, Y.-H., Pizzuti, A., Fenwick, R. G., Jr., King, J., Rajnarayan, R., Dunne, J., Dubel, P. W., Nasser, G. A., Ashizawa, T., De Jong, P., Wieringa, B., Korneluk, R., Perryman, M. B., Epstein, H. F., and Caskey, C. T., 1992. Science, 255:1256–1258.
7. 1993. Cell, 72:971–983. The Huntington's Disease Collaborative Research Group
8. Caskey, C. T., Pizzuti, A., Fu, Y.-H., Fenwick, R. G., and Nelson, D. L., 1992. Science, 256:784–789.
9. Duyao, M., Ambrose, A., Myers, R., Novelleto, A., Persichetti, F., Frontali, M., Folstein, S., Ross, C., Franz, M., Abbott, M., Cray, J., Conneally, P., Young, A., Penney, J., Hollingsworth, Z., Shoulson, I., Lazzarini, A., Falek, A., Koroshetz, W., Sax, D., Bird, E., Vonsattel, J., Bonilla, J., Alvir, J., Conde, J. B., Cha, J-H., Dure, L., Gomez, F., Ramos, M., Sanchez-Ramos, J., Snodgrass, S., De Young, M., Wexler, N., Moscowitz, C., Penchaszadeh, G., MacFarlane, H., Anderson, M., Jenkins, B., Srinidhi, J., Barnes, G., Gusella, J., and MacDonald, M., 1993. Nature Gent., 4:387–397.
10. Chen, X., Mariappan, S. V. S., Catasti, P., Ratliff, R., Moyzis, R. K., Laayoun, A., Smith, S. S., Bradbury, E. M., and Gupta, G., 1995. Proc. Natl. Acad. Sci. USA, 92:5199–5203.
11. Fry, M., and Leob, L. A., 1994. Proc. Natl. Acad Sci. USA, 91:4950–4954.
12. Gacy, A. M., Goellener, G., Juranic, N., Macura, S., and McMurray, C. T., 1995. Cell, 81:533–540.
13. Jaworski, A., Rosche, W. A., Gellibolian, R., Kang, S., Shimizu, M., Bowater, R. P., Sinden, R. R., and Wells, R. D., 1995. Proc. Natl. Acad. Sci. USA, 92:11019–11023.
14. Kang, S., Jaworski, A., Ohshima, K., and Wells, R. D., 1995. Nature Genet., 10:213–218.
15. th ENC 105 (Experimental Nuclear Magnetic Resonance Conference)
16. Mariappan, S. V. S., Gupta, G., and Garcia, A. E., 1995. In The Biophysical Society Abstract Book:Macromolecular Packing 250 (Edited by the Biophysical Society), pp. A
17. Mariappan, S. V. S., Garcia, A. E., and Gupta, G., 1996. Nucleic Acids. Res., 24:775–783.
18. Mariappan, S. V. S., Catasti, P., Chen, X., Ratliff, R., Moyzis, R. K., Laayoun, A., Smith, S. S., Bradbury, E. M., and Gupta, G., 1996. Nucleic Acids Res., 24:784–792.
19. Mitas, M., Yi, A., Dill, J., Kamp, T. J., Chambers, E. J., and Howarth, I. S., 1995. Nucleic Acids Res., 23:1050–1059.
20. Schlotterer, C., and Tautz, D., 1992. Nucleic Acids Res., 20:211–215.
21. Ashburn, D. A., Kelly, J., Michalczyk, R., and Silks, L. A., 1995. J. Labeled Comp. Radiopharm. XXXVI,:631–635.
22. Ti, G. S., Gaffney, B. L., and Jones, R. A., 1982. J. Am. Chem. Soc., 104:1316–1319.
23. Pitto, M., Saudek, V., and Sklenar, V., 1992. J. Biomol. NMR, 2:661–666.
24. Derome, A. E., and Williamson, M. P., 1990. J. Magn. Reson., 88:177–185.
25. Bax, A., Griffey, R. H., and Hawkins, B. L., 1983. J. Magn. Reson., 55:301–315.
26. Fesik, S. W., and Zuiderweg, E. R. P., 1988. J. Magn. Reson., 78:588–593.
27. Mori, S., Abeygunawardana, C., Johnson, M. O., and van Zijl, P., 1995. J. Magn. Reson. B, 108:94–98.
28. Messerle, B. A., Wider, G., Otting, G., Weber, C., and Wuthrich, K., 1989. J. Magn. Reson., 85:608–613.
29. Gupta, G., Garcia, A. E., and Hiriyanna, H. T., 1993. Biochemistry, 32:948–960.
30. Catasti, P., Gupta, G., Garcia, A. E., Ratliff, R., Hong, L., Yau, P., Moyzis, R. K., and Bradbury, E. M., 1994. Biochemistry, 33:3819–3830.
31. Williamson, J. R., Raghuraman, M. K., and Cech, T. R., 1989. Cell, 59:871–880.
32. Van De Ven, F. J. M., and Hilbers. 1988. Eur. J. Biochem., 170:1–38.
33. Orbons, L. P. M., van der Marel, G. A., van Boom, J. H., and Altona, C., 1988. J. Biomol. Struct. Dyn., 4:939–963.
34. Wemtges, H., Steger, G., Riesner, D., and Fritz, H., 1986. Nucleic Acids Res., 14:3773–3790.
35. Gervais, V., Cognet, J. A. H., Le Bret, M., Sowers, L. C., and Fazakerley, G. V., 1995. Eur. J. Biochem., 228:279–290.
36. Mariappan, S. V. S., Catasti, P., Chen, X., Silks, L. A., III, Moyzis, R. K., Deavan, L. L., Bradbury, E. M., and Gupta, G., 1997. J. Biomol. Struct. Dyn., 14:915–915.
37. Neuhaus, D., and Williamson, M. P., 1989. The nuclear Overhauser effect in structural and conformational analysis:The kinetics of NOE 103–140. VCH Publishers, Inc., New York
38. Gupta, G., Umemoto, K., Sarma, M. H., and Sarma, R. H., 1989. Int. J. Quantum Chem. Quantum Biol. Symp., 16:17–33.
39. Petruska, J., Amheim, N., and Goodman, M. F., 1996. Nucl. Acid Res., 24:1992–1998.
40. Gordenin, D. A., Lobachev, K. S., Degtyareva, N. P., Malkova, A. L., Perkins, E., and Resnick, M. A., 1993. Mol. Cell. Biol., 13:5315–5322.
41. Tran, H. T., Degtyareva, N. P., Koloteva, N. N., Sugino, A., Masumoto, H., Gordenin, D. A., and Resnick, M. A., 1995. Mol. Cell. Biol., 15:5607–5617.
42. Kupferschmitt, G., Schmidt, J., Schmidt, T., Fera, B., Buck, F., and Ruteijans, R., 1987. Nucleic Acids Res., 15:6225–6241.
43. Cognet, J. A. H., Gabarro-Arpa, J., Bret, M. L., van der Marel, G. A., van Boom, J. H., and Fazakerley, G. V., 1991. Nucleic Acids Res., 19:6771–6779.
44. Kan, L.-S., Chandrasegaran, S., Pulford, S. M., and Miller, P. S., 1983. Proc. Natl. Acad. Sci. USA, 80:4263–4265.
45. Kennard, O., 1988. Structure and Expression:DNA and its Drug Complexes Edited by:Olson, W. K., Sarma, R. H., Sarma, M., and Sundaralingam, M. S., 2–26. 1 Adenine Press, Schenectady, NY
46. Li, Y., Zon, G., and Wilson, W. D., 1991. Proc. Natl. Acad. Sci. USA, 88:26–30.
47. Prive, G. G., Heinemann, U., Chandrasegaran, S., Kan, L. S., Kopka, M., and Dickerson, R. E., 1988. Structure and Expression:DNA and its Drug Complexes Edited by:Olson, W. K., Sarma, R. H., Sarma, M., and Sundaralingam, M. S., 2–48. 27 Adenine Press, Schenectady, NY
48. Dover, G., 1995. Nature Genetics, 10:254–256.
49. Wells, R. D., 1996. J. Biol. Chem., 271:2875–2878.
50. Mariappan, S. V. S., Chen, X., Silks, L. A., III, Ratliff, R., Moyzis, R. K., Bradbury, E. M., Garcia, A. E., and Gupta, G., 1996. The Biophysical Society Abstract Book:Folding and Self-assembly- Stability and Intermediate states 27 (Edited by the Biophysical Society), pp. A