Directed evolution of (βα)8-barrel enzymes

Biomolecular Engineering

Volumn 22, Issue 1-3, 2005, Pages 31-38

  Höcker, Birte ^a  

^a DUKE UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

( )8 Barrel; Directed evolution; Random mutagenesis; TIM barrel

Indexed keywords

BIODIVERSITY; BIOMEDICAL ENGINEERING; MOLECULAR BIOLOGY;

ENZYME STABILITY; EVOLUTIONARY METHODS; NATURAL MOLECULAR EVOLUTION; PROTEIN ENGINEERING;

ENZYMES;

TRIOSEPHOSPHATE ISOMERASE; ENZYME;

AMINO ACID SUBSTITUTION; CARBOXY TERMINAL SEQUENCE; COLD ACCLIMATIZATION; DIRECTED MOLECULAR EVOLUTION; ENZYME ENGINEERING; ENZYME STABILITY; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; REVIEW; SACCHAROMYCES CEREVISIAE; ANIMAL; CATALYSIS; CHEMISTRY; GENETICS; HUMAN; METHODOLOGY; PROTEIN ENGINEERING;

ANIMALS; CATALYSIS; DIRECTED MOLECULAR EVOLUTION; ENZYME STABILITY; ENZYMES; HUMANS; PROTEIN ENGINEERING; PROTEIN FOLDING;

EID: 18044384442     PISSN: 13890344     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bioeng.2004.09.005     Document Type: Review

References (62)

1. R.C. Cadwell, and G.F. Joyce PCR Methods Appl 3 1994 S136 S140
2. W.P. Stemmer, A. Crameri, K.D. Ha, T.M. Brennan, and H.L. Heyneker Gene 164 1995 49 53
3. H. Zhao, L. Giver, Z. Shao, J.A. Affholter, and F.H. Arnold Nat Biotechnol 16 1998 258 261
4. M. Ostermeier, J.H. Shim, and S.J. Benkovic Nat Biotechnol 17 1999 1205 1209
5. G. Pujadas, J. Palau, and Biologica Bratislava 54 1999 231 253
6. J.A. Gerlt, and F.M. Raushel Curr Opin Chem Biol 7 2003 252 264
7. M.C. Vega, E. Lorentzen, A. Linden, and M. Wilmanns Curr Opin Chem Biol 7 2003 694 701
8. M. Henn-Sax, B. Höcker, M. Wilmanns, and R. Sterner Biol Chem 382 2001 1315 1320
9. J.A. Silverman, R. Balakrishnan, and P.B. Harbury Proc Natl Acad Sci U S A 98 2001 3092 3907
10. D. Straus, and W. Gilbert Proc Natl Acad Sci U S A 82 1985 2014 2018
11. J. Eder, and K. Kirschner Biochemistry 31 1992 3617 3625
12. J.A. Zitzewitz, and C.R. Matthews Biochemistry 38 1999 10205 10214
13. B.L. Bertolaet, and J.R. Knowles Biochemistry 34 1995 5736 5743
14. K. Luger, U. Hommel, M. Herold, J. Hofsteenge, and K. Kirschner Science 243 1989 206 210
15. A. Shukla, and P. Guptasarma Proteins 55 2004 548 557
16. K. Hiraga, A. Yamagishi, and T. Oshima J Mol Biol 335 2004 1093 1104
17. G.K. Farber, and G.A. Petsko Trends Biochem Sci 15 1990 228 234
18. P. Tafelmeyer, N. Johnsson, and K. Johnsson Chem Biol 11 2004 681 689
19. N. Johnsson, and A. Varshavsky Proc Natl Acad Sci U S A 91 1994 10340 10344
20. M. Hennig, R. Sterner, K. Kirschner, and J.N. Jansonius Biochemistry 36 1997 6009 6016
21. J.D. Hermes, S.C. Blacklow, and J.R. Knowles Proc Natl Acad Sci U S A 87 1990 696 700
22. J.D. Hermes, S.M. Parekh, S.C. Blacklow, H. Koster, and J.R. Knowles Gene 84 1989 143 151
23. G. Saab-Rincon, V.R. Juarez, J. Osuna, F. Sanchez, and X. Soberon Protein Eng 14 2001 149 155
24. T.V. Borchert, R. Abagyan, R. Jaenicke, and R.K. Wierenga Proc Natl Acad Sci U S A 91 1994 1515 1518
25. C.M. Cho, A. Mulchandani, and W. Chen Appl Environ Microbiol 68 2002 2026 2030
26. M. Chen-Goodspeed, M.A. Sogorb, F. Wu, and F.M. Raushel Biochemistry 40 2001 1332 1339
27. N. Wymer, L.V. Buchanan, D. Henderson, N. Mehta, C.H. Botting, L. Pocivavsek, C.A. Fierke, E.J. Toone, and J.H. Naismith Structure 9 2001 1 9
28. R. Jaenicke Proc Natl Acad Sci U S A 97 2000 2962 2964
29. A. Merz, M.C. Yee, H. Szadkowski, G. Pappenberger, A. Crameri, W.P. Stemmer, C. Yanofsky, and K. Kirschner Biochemistry 39 2000 880 889
30. J.H. Lebbink, T. Kaper, P. Bron, J. van der Oost, and W.M. de Vos Biochemistry 39 2000 3656 3665
31. A. Lönn, M. Gardonyi, W. van Zyl, B. Hahn-Hagerdal, and R.C. Otero Eur J Biochem 269 2002 157 163
32. D. Sriprapundh, C. Vieille, and J.G. Zeikus Protein Eng 16 2003 683 690
33. R. Jaenicke, and G. Böhm Curr Opin Struct Biol 8 1998 738 748
34. R. Sterner, and W. Liebl Crit Rev Biochem Mol Biol 36 2001 39 106
35. J.C. Williams, J.P. Zeelen, G. Neubauer, G. Vriend, J. Backmann, P.A. Michels, A.M. Lambeir, and R.K. Wierenga Protein Eng 12 1999 243 250
36. C. Lopez-Camacho, J. Salgado, J.L. Lequerica, A. Madarro, E. Ballestar, L. Franco, and J. Polaina Biochem J 314 1996 833 838
37. J. Sanz-Aparicio, J.A. Hermoso, M. Martinez-Ripoll, B. Gonzalez, C. Lopez-Camacho, and J. Polaina Proteins 33 1998 567 576
38. M.J. Arrizubieta, and J. Polaina J Biol Chem 275 2000 28843 28848
39. H. Minagawa, J. Shimada, and H. Kaneko Eur J Biochem 270 2003 3628 3633
40. M.T. Reetz Proc Natl Acad Sci U S A 101 2004 5716 5722
41. S. Fong, T.D. Machajewski, C.C. Mak, and C. Wong Chem Biol 7 2000 873 883
42. M. Wada, C.C. Hsu, D. Franke, M. Mitchell, A. Heine, I. Wilson, and C.H. Wong Bioorg Med Chem 11 2003 2091 2098
43. O. May, P.T. Nguyen, and F.H. Arnold Nat Biotechnol 18 2000 317 320
44. J. Abendroth, K. Niefind, O. May, M. Siemann, C. Syldatk, and D. Schomburg Biochemistry 41 2002 8589 8597
45. Y.H. Cheon, H.S. Kim, K.H. Han, J. Abendroth, K. Niefind, D. Schomburg, J. Wang, and Y. Kim Biochemistry 41 2002 9410 9417
46. Y.H. Cheon, H.S. Park, J.H. Kim, Y. Kim, and H.S. Kim Biochemistry 43 2004 7413 7420
47. I. Matsui, and B. Svensson J Biol Chem 272 1997 22456 22463
48. T.E. Gottschalk, D. Tull, N. Aghajari, R. Haser, and B. Svensson Biochemistry 40 2001 12844 12854
49. D. Reardon, and G.K. Farber FASEB J 9 1995 497 503
50. R.R. Copley, and P. Bork J Mol Biol 303 2000 627 641
51. M. Wilmanns, C.C. Hyde, D.R. Davies, K. Kirschner, and J.N. Jansonius Biochemistry 30 1991 9161 9169
52. P. Bork, J. Gellerich, H. Groth, R. Hooft, and F. Martin Protein Sci 4 1995 268 274
53. N. Nagano, C.A. Orengo, and J.M. Thornton J Mol Biol 321 2002 741 765
54. S. Schmidt, S. Sunyaev, P. Bork, and T. Dandekar Trends Biochem Sci 28 2003 336 341
55. R. Fani, P. Lio, I. Chiarelli, and M. Bazzicalupo J Mol Evol 38 1994 489 495
56. D. Lang, R. Thoma, M. Henn-Sax, R. Sterner, and M. Wilmanns Science 289 2000 1546 1550
57. B. Höcker, S. Beismann-Driemeyer, S. Hettwer, A. Lustig, and R. Sterner Nat Struct Biol 8 2001 32 36
58. C. Jürgens, A. Strom, D. Wegener, S. Hettwer, M. Wilmanns, and R. Sterner Proc Natl Acad Sci U S A 97 2000 9925 9930
59. M. Henn-Sax, R. Thoma, S. Schmidt, M. Hennig, K. Kirschner, and R. Sterner Biochemistry 41 2002 12032 12042
60. S. Leopoldseder, J. Claren, C. Jürgens, and R. Sterner J Mol Biol 337 2004 871 879
61. P.C. Babbitt, M.S. Hasson, J.E. Wedekind, D.R. Palmer, W.C. Barrett, G.H. Reed, I. Rayment, D. Ringe, G.L. Kenyon, and J.A. Gerlt Biochemistry 35 1996 16489 16501
62. D.M. Schmidt, E.C. Mundorff, M. Dojka, E. Bermudez, J.E. Ness, S. Govindarajan, P.C. Babbitt, J. Minshull, and J.A. Gerlt Biochemistry 42 2003 8387 8393