-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0034667949
-
High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: Roles in promoter proximal pausing and transcription elongation
-
Andrulis, E. D., E. Guzman, P. Doring, J. Werner, and J. T. Lis. 2000. High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. Genes Dev. 14:2635-2649.
-
(2000)
Genes Dev.
, vol.14
, pp. 2635-2649
-
-
Andrulis, E.D.1
Guzman, E.2
Doring, P.3
Werner, J.4
Lis, J.T.5
-
3
-
-
0031460227
-
An essential component of a C-terminal domain phosphatase that interacts with transcription factor IIF in Saccharomyces cerevisiae
-
Archambault, J., R. S. Chambers, M. S., Kobor, Y. Ho, M. Cartier, D. Bolotin, B. Andrews, C. M. Kane, and J. Greenblatt. 1997. An essential component of a C-terminal domain phosphatase that interacts with transcription factor IIF in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 94:14300-14305.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 14300-14305
-
-
Archambault, J.1
Chambers, R.S.2
Kobor, M.S.3
Ho, Y.4
Cartier, M.5
Bolotin, D.6
Andrews, B.7
Kane, C.M.8
Greenblatt, J.9
-
4
-
-
0025674254
-
Lethal and temperature-sensitive mutations and their suppressors identify an essential structural element in U2 small nuclear RNA
-
Ares, M., Jr., and A. H. Igel. 1990. Lethal and temperature-sensitive mutations and their suppressors identify an essential structural element in U2 small nuclear RNA. Genes Dev. 4:2132-2145.
-
(1990)
Genes Dev.
, vol.4
, pp. 2132-2145
-
-
Ares M., Jr.1
Igel, A.H.2
-
5
-
-
0024435576
-
PRP4: A protein of the yeast U4/U6 small nuclear ribonucleoprotein particle
-
Banroques, J., and J. N. Ahelson. 1989. PRP4: a protein of the yeast U4/U6 small nuclear ribonucleoprotein particle. Mol. Cell. Biol. 9:3710-3719.,
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 3710-3719
-
-
Banroques, J.1
Ahelson, J.N.2
-
6
-
-
0029890667
-
Evidence that Spt6p controls chromatin structure by a direct interaction with histones
-
Bortvin, A. L., and F. Winston. 1996. Evidence that Spt6p controls chromatin structure by a direct interaction with histones. Science 272:1473-1476.
-
(1996)
Science
, vol.272
, pp. 1473-1476
-
-
Bortvin, A.L.1
Winston, F.2
-
7
-
-
0035027953
-
A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription
-
Brewster, N. K., G. C. Johnston, and R. A. Singer. 2001. A bipartite yeast SSRP1 analog comprised of Pob3 and Nhp6 proteins modulates transcription. Mol. Cell. Biol. 21:3491-3502.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 3491-3502
-
-
Brewster, N.K.1
Johnston, G.C.2
Singer, R.A.3
-
8
-
-
0032555659
-
Characterization of the CP complex, an abundant dimer of Cdc68 and Pob3 proteins that regulates yeast transcriptional activation and chromatin repression
-
Brewster, N. K., G. C. Johnston, and R. A. Singer. 1998. Characterization of the CP complex, an abundant dimer of Cdc68 and Pob3 proteins that regulates yeast transcriptional activation and chromatin repression. J. Biol. Chem. 273:21972-21979.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 21972-21979
-
-
Brewster, N.K.1
Johnston, G.C.2
Singer, R.A.3
-
9
-
-
0030768938
-
The H3/H4 tetramer blocks transcript elongation by RNA polymerase II in vitro
-
Chang, C. U., and D. S. Luse. 1997. The H3/H4 tetramer blocks transcript elongation by RNA polymerase II in vitro. J. Biol. Chem. 272:23427-23434.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 23427-23434
-
-
Chang, C.U.1
Luse, D.S.2
-
10
-
-
0032533898
-
Allosteric interactions between capping enzyme subunits and the RNA polymerase II carboxy-terminal domain
-
Cho, E. J., C. R. Rodriguez, T. Takagi, and S. Baratowski. 1998. Allosteric interactions between capping enzyme subunits and the RNA polymerase II carboxy-terminal domain. Genes Dev. 12:3482-3487.
-
(1998)
Genes Dev.
, vol.12
, pp. 3482-3487
-
-
Cho, E.J.1
Rodriguez, C.R.2
Takagi, T.3
Baratowski, S.4
-
11
-
-
0031453408
-
mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain
-
Cho, E. J., T. Takagi, C. R. Moore, and S. Buratowski. 1997. mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain. Genes Dev. 11:3319-3326.
-
(1997)
Genes Dev.
, vol.11
, pp. 3319-3326
-
-
Cho, E.J.1
Takagi, T.2
Moore, C.R.3
Buratowski, S.4
-
12
-
-
0037012922
-
Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays
-
Clark, T. A., C. W. Sugnet, and M. Ares, Jr. 2002. Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays. Science 296:907-910.
-
(2002)
Science
, vol.296
, pp. 907-910
-
-
Clark, T.A.1
Sugnet, C.W.2
Ares M., Jr.3
-
13
-
-
0034655641
-
Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast
-
Davis, C. A., L. Grate, M. Spingola, and M. Ares, Jr. 2000. Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast. Nucleic Acids Res. 28:1700-1706.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 1700-1706
-
-
Davis, C.A.1
Grate, L.2
Spingola, M.3
Ares M., Jr.4
-
14
-
-
0027971970
-
The yeast CCR4 protein is neither regulated by nor associated with the SPT6 and SPT10 proteins and forms a functionally distinct complex from that of the SNF/SWI transcription factors
-
Denis, C. L., M. P. Draper, H. Y. Liu, T. Malvar, R. C. Vallari, and W. J. Cook. 1994. The yeast CCR4 protein is neither regulated by nor associated with the SPT6 and SPT10 proteins and forms a functionally distinct complex from that of the SNF/SWI transcription factors. Genetics 138:1005-1013.
-
(1994)
Genetics
, vol.138
, pp. 1005-1013
-
-
Denis, C.L.1
Draper, M.P.2
Liu, H.Y.3
Malvar, T.4
Vallari, R.C.5
Cook, W.J.6
-
15
-
-
0022340978
-
Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product
-
Evan, G. I., G. K. Lewis, G. Ramsay, and J. M. Bishop. 1985. Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product. Mol. Cell. Biol. 5:3610-3616.
-
(1985)
Mol. Cell. Biol.
, vol.5
, pp. 3610-3616
-
-
Evan, G.I.1
Lewis, G.K.2
Ramsay, G.3
Bishop, J.M.4
-
16
-
-
0030711724
-
Participation of the nuclear cap binding complex in pre-mRNA 3′ processing
-
Flaherty, S. M., P. Fortes, E. Izaurralde, I. W. Mattaj, and G. M. Gilmartin. 1997. Participation of the nuclear cap binding complex in pre-mRNA 3′ processing. Proc. Natl. Acad. Sci. USA 94:11893-11898.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 11893-11898
-
-
Flaherty, S.M.1
Fortes, P.2
Izaurralde, E.3
Mattaj, I.W.4
Gilmartin, G.M.5
-
17
-
-
0035924345
-
Stimulatory effect of splicing factors on transcriptional elongation
-
Fong, Y. W., and Q. Zhou. 2001. Stimulatory effect of splicing factors on transcriptional elongation. Nature 414:929-933.
-
(2001)
Nature
, vol.414
, pp. 929-933
-
-
Fong, Y.W.1
Zhou, Q.2
-
18
-
-
0035796454
-
Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN
-
Formosa, T., P. Eriksson, J. Wittmeyer, J. Ginn, Y. Yu, and D. J. Stillman. 2001. Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN. EMBO J. 20:3506-3517.
-
(2001)
EMBO J.
, vol.20
, pp. 3506-3517
-
-
Formosa, T.1
Eriksson, P.2
Wittmeyer, J.3
Ginn, J.4
Yu, Y.5
Stillman, D.J.6
-
19
-
-
0029951308
-
Conditional mutants of the yeast mRNA capping enzyme show that the cap enhances, but is not required for, mRNA splicing
-
Fresco, L. D., and S. Buratowski. 1996. Conditional mutants of the yeast mRNA capping enzyme show that the cap enhances, but is not required for, mRNA splicing. RNA 2:584-596.
-
(1996)
RNA
, vol.2
, pp. 584-596
-
-
Fresco, L.D.1
Buratowski, S.2
-
20
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
Gavin, A. C., M. Bosche, R. Krause, P. Grandi, M. Marzioch, A. Bauer, J. Schultz, J. M. Rick, A. M. Michon, C. M. Cruciat, M. Remor, C. Hofert, M. Schelder, M. Brajenovic, H. Ruffner, A. Merino, K. Klein, M. Hudak, D. Dickson, T. Rudi, V. Gnau, A. Bauch, S. Bastuck, B. Huhse, C. Leutwein, M. A. Heurtier, R. R. Copley, A. Edelmann, E. Querfurth, V. Rybin, G. Drewes, M. Raida, T. Bouwmeester, P. Bork, B. Seraphin, B. Kuster, G. Neubauer, and G. Superti-Furga. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415:141-147.
-
(2002)
Nature
, vol.415
, pp. 141-147
-
-
Gavin, A.C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.M.9
Cruciat, C.M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
21
-
-
0032004953
-
Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae
-
Hartzog, G. A., T. Wada, H. Handa, and F. Winston. 1998. Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae. Genes Dev. 12:357-369.
-
(1998)
Genes Dev.
, vol.12
, pp. 357-369
-
-
Hartzog, G.A.1
Wada, T.2
Handa, H.3
Winston, F.4
-
23
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
Ho, Y., A. Gruhler, A. Heilbut, G. D. Bader, L. Moore, S. L. Adams, A. Millar, P. Taylor, K. Bennett, K. Boutilier, L. Yang, C. Wolting, I. Donaldson, S. Schandorff, J. Shewnarane, M. Vo, J. Taggart, M. Goudreault, B. Muskat, C. Alfarano, D. Dewar, Z. Lin, K. Michalickova, A. R. Willems, H. Sassi, P. A. Nielsen, K. J. Rasmussen, J. R. Andersen, L. E. Johansen, L. H. Hansen, H. Jespersen, A. Podtelejnikov, E. Nielsen, J. Crawford, V. Poulsen, B. D. Sorensen, J. Matthiesen, R. C. Hendrickson, F. Gleeson, T. Pawson, M. F. Moran, D. Durocher, M. Mann, C. W. Hogue, D. Figeys, and M. Tyers. 2002. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415:180-183.
-
(2002)
Nature
, vol.415
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.44
Figeys, D.45
Tyers, M.46
more..
-
24
-
-
0342748478
-
Domains in the SPT5 protein that modulate its transcriptional regulatory properties
-
Ivanov, D., Y. T. Kwak, J. Guo, and R. B. Gaynor. 2000. Domains in the SPT5 protein that modulate its transcriptional regulatory properties. Mol. Cell. Biol. 20:2970-2983.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 2970-2983
-
-
Ivanov, D.1
Kwak, Y.T.2
Guo, J.3
Gaynor, R.B.4
-
25
-
-
0026629273
-
Factor-stimulated RNA polymerase II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates
-
Izban, M. G., and D. S. Luse. 1992. Factor-stimulated RNA polymerase II transcribes at physiological elongation rates on naked DNA but very poorly on chromatin templates. J. Biol. Chem. 267:13647-13655.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 13647-13655
-
-
Izban, M.G.1
Luse, D.S.2
-
26
-
-
0025877255
-
Transcription on nucleosomal templates by RNA polymerase II in vitro: Inhibition of elongation with enhancement of sequence-specific pausing
-
Izban, M. G., and D. S. Luse. 1991. Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing. Genes Dev. 5:683-696.
-
(1991)
Genes Dev.
, vol.5
, pp. 683-696
-
-
Izban, M.G.1
Luse, D.S.2
-
27
-
-
0034667805
-
Spt5 and Spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster
-
Kaplan, C. D., J. R. Morris, C. Wu, and F. Winston. 2000. Spt5 and Spt6 are associated with active transcription and have characteristics of general elongation factors in D. melanogaster. Genes Dev. 14:2623-2634.
-
(2000)
Genes Dev.
, vol.14
, pp. 2623-2634
-
-
Kaplan, C.D.1
Morris, J.R.2
Wu, C.3
Winston, F.4
-
28
-
-
0032792831
-
Tat-SF1 protein associates with RAP30 and human SPT5 proteins
-
Kim, J. B., Y. Yamaguchi, T. Wada, H. Handa, and P. A. Sharp. 1999. Tat-SF1 protein associates with RAP30 and human SPT5 proteins. Mol. Cell. Biol. 19:5960-5968.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 5960-5968
-
-
Kim, J.B.1
Yamaguchi, Y.2
Wada, T.3
Handa, H.4
Sharp, P.A.5
-
29
-
-
0034307008
-
Different phosphorylated forms of RNA polymerase 11 and associated mRNA processing factors during transcription
-
Komarnitsky, P., E. J. Cho, and S. Buratowski. 2000. Different phosphorylated forms of RNA polymerase 11 and associated mRNA processing factors during transcription. Genes Dev. 14:2452-2460.
-
(2000)
Genes Dev.
, vol.14
, pp. 2452-2460
-
-
Komarnitsky, P.1
Cho, E.J.2
Buratowski, S.3
-
30
-
-
0036787862
-
RNA polymerase II elongation factors of Saccharomyces cerevisiae: A targeted proteomics approach
-
Krogan, N. J., M. Kim, S. H. Ahn, G. Zhong, M. S. Kobor, G. Cagney, A. Emili, A. Shilatifard, S. Buratowski, and J. F. Greenblatt. 2002. RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach. Mol. Cell. Biol. 22:6979-6992.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 6979-6992
-
-
Krogan, N.J.1
Kim, M.2
Ahn, S.H.3
Zhong, G.4
Kobor, M.S.5
Cagney, G.6
Emili, A.7
Shilatifard, A.8
Buratowski, S.9
Greenblatt, J.F.10
-
31
-
-
0034764781
-
Genetic interactions of Spt4-Spt5 and TFIIS with the RNA polymerase II CTD and CTD modifying enzymes in Saccharomyces cerevisiae
-
Lindstrom, D. L., and G. A. Hartzog. 2001. Genetic interactions of Spt4-Spt5 and TFIIS with the RNA polymerase II CTD and CTD modifying enzymes in Saccharomyces cerevisiae. Genetics 159:487-497.
-
(2001)
Genetics
, vol.159
, pp. 487-497
-
-
Lindstrom, D.L.1
Hartzog, G.A.2
-
32
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
Link, A. J., J. Eng, D. M. Schieltz, E. Carmack, G. J. Mize, D. R. Morris, B. M. Garvik, and J. R. Yates III. 1999. Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17:676-682.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 676-682
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
Carmack, E.4
Mize, G.J.5
Morris, D.R.6
Garvik, B.M.7
Yates J.R. III8
-
33
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
-
Longtine, M. S., A. McKenzie III, D. J. Demarini, N. G. Shah, A. Wach, A. Brachat, P. Philippsen, and J. R. Pringle. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961.
-
(1998)
Yeast
, vol.14
, pp. 953-961
-
-
Longtine, M.S.1
McKenzie A. III2
Demarini, D.J.3
Shah, N.G.4
Wach, A.5
Brachat, A.6
Philippsen, P.7
Pringle, J.R.8
-
34
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis, T., and R. Reed. 2002. An extensive network of coupling among gene expression machines. Nature 416:499-506.
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
35
-
-
0029001790
-
Yeast mRNA cap methyltransferase is a 50-kilodalton protein encoded by an essential gene
-
Mao, X., B. Schwer, and S. Shuman. 1995. Yeast mRNA cap methyltransferase is a 50-kilodalton protein encoded by an essential gene. Mol. Cell. Biol. 15:4167-4174.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 4167-4174
-
-
Mao, X.1
Schwer, B.2
Shuman, S.3
-
36
-
-
15644372864
-
5′-capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II
-
McCracken, S., N. Fong, E. Rosonina, K. Yankulov, G. Brothers, D. Siderovski, A. Hessel, S. Foster, S. Shuman, and D. L. Bentley. 1997. 5′-capping enzymes are targeted to pre-mRNA by binding to the phosphorylated carboxy-terminal domain of RNA polymerase II. Genes Dev. 11:3306-3318.
-
(1997)
Genes Dev.
, vol.11
, pp. 3306-3318
-
-
McCracken, S.1
Fong, N.2
Rosonina, E.3
Yankulov, K.4
Brothers, G.5
Siderovski, D.6
Hessel, A.7
Foster, S.8
Shuman, S.9
Bentley, D.L.10
-
38
-
-
0036123253
-
Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex
-
Mueller, C. L., and J. A. Jaehning. 2002. Ctr9, Rtf1, and Leo1 are components of the Paf1/RNA polymerase II complex. Mol. Cell. Biol. 22:1971-1980.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 1971-1980
-
-
Mueller, C.L.1
Jaehning, J.A.2
-
39
-
-
0034972804
-
Phosphorylation of the RNA polymerase II carboxy-terminal domain by the Bur1 cyclin-dependent kinase
-
Murray, S., R. Udupa, S. Yao, G. Hartzog, and G. Prelich. 2001. Phosphorylation of the RNA polymerase II carboxy-terminal domain by the Bur1 cyclin-dependent kinase. Mol. Cell. Biol. 21:4089-4096.
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 4089-4096
-
-
Murray, S.1
Udupa, R.2
Yao, S.3
Hartzog, G.4
Prelich, G.5
-
40
-
-
0032498273
-
FACT, a factor that facilitates transcript elongation through nucleosomes
-
Orphanides, G., G. LeRoy, C. H. Chang, D. S. Luse, and D. Reinberg. 1998. FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 92:105-116.
-
(1998)
Cell
, vol.92
, pp. 105-116
-
-
Orphanides, G.1
LeRoy, G.2
Chang, C.H.3
Luse, D.S.4
Reinberg, D.5
-
41
-
-
0033566129
-
The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins
-
Orphanides, G., W. H. Wu, W. S. Lane, M. Hampsey, and D. Reinberg. 1999. The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins. Nature 400:284-288.
-
(1999)
Nature
, vol.400
, pp. 284-288
-
-
Orphanides, G.1
Wu, W.H.2
Lane, W.S.3
Hampsey, M.4
Reinberg, D.5
-
42
-
-
0033168226
-
A novel RNA polymerase II-containing complex potentiates Tat-enhanced HIV-1 transcription
-
Parada, C. A., and R. G. Roeder. 1999. A novel RNA polymerase II-containing complex potentiates Tat-enhanced HIV-1 transcription. EMBO J. 18:3688-3701.
-
(1999)
EMBO J.
, vol.18
, pp. 3688-3701
-
-
Parada, C.A.1
Roeder, R.G.2
-
43
-
-
0037205456
-
Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5
-
Pei, Y., and S. Shuman. 2002. Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5. J. Biol. Chem. 277:19639-19648.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 19639-19648
-
-
Pei, Y.1
Shuman, S.2
-
44
-
-
0036241663
-
Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo
-
Pokholok, D. K., N. M. Hannett, and R. A. Young. 2002. Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo. Mol. Cell 9:799-809.
-
(2002)
Mol. Cell
, vol.9
, pp. 799-809
-
-
Pokholok, D.K.1
Hannett, N.M.2
Young, R.A.3
-
45
-
-
0037154967
-
Integrating mRNA processing with transcription
-
Proudfoot, N. J., A. Furger, and M. J. Dye. 2002. Integrating mRNA processing with transcription. Cell 108:501-512.
-
(2002)
Cell
, vol.108
, pp. 501-512
-
-
Proudfoot, N.J.1
Furger, A.2
Dye, M.J.3
-
46
-
-
0003529272
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Rose, M. D., F. Winston, and P. Hieter. 1990. Methods in yeast genetics: a laboratory course manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1990)
Methods in Yeast Genetics: A Laboratory Course Manual
-
-
Rose, M.D.1
Winston, F.2
Hieter, P.3
-
47
-
-
0029902842
-
Conditional inactivation of mRNA capping enzyme affects yeast pre-mRNA splicing in vivo
-
Schwer, B., and S. Shuman. 1996. Conditional inactivation of mRNA capping enzyme affects yeast pre-mRNA splicing in vivo. RNA 2:574-583.
-
(1996)
RNA
, vol.2
, pp. 574-583
-
-
Schwer, B.1
Shuman, S.2
-
48
-
-
0035201941
-
Structure, mechanism, and evolution of the mRNA capping apparatus
-
Shuman, S. 2001. Structure, mechanism, and evolution of the mRNA capping apparatus. Prog. Nucleic Acid Res. Mol. Biol. 66:1-40.
-
(2001)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.66
, pp. 1-40
-
-
Shuman, S.1
-
49
-
-
0037007217
-
The Paf1 complex physically and functionally associates with transcription elongation factors in vivo
-
Squazzo, S. L., P. J. Costa, D. L. Lindstrom, K. E. Kumer, R. Simic, J. L. Jennings, A. J. Link, K. M. Arndt, and G. A. Hartzog. 2002. The Paf1 complex physically and functionally associates with transcription elongation factors in vivo. EMBO J. 21:1764-1774.
-
(2002)
EMBO J.
, vol.21
, pp. 1764-1774
-
-
Squazzo, S.L.1
Costa, P.J.2
Lindstrom, D.L.3
Kumer, K.E.4
Simic, R.5
Jennings, J.L.6
Link, A.J.7
Arndt, K.M.8
Hartzog, G.A.9
-
50
-
-
0025869163
-
SPT5, an essential gene important for normal transcription in Saccharomyces cerevisiae, encodes an acidic nuclear protein with a carboxy-terminal repeat
-
Swanson, M. S., E. A. Malone, and F. Winston. 1991. SPT5, an essential gene important for normal transcription in Saccharomyces cerevisiae, encodes an acidic nuclear protein with a carboxy-terminal repeat. Mol. Cell. Biol. 11:3009-3019.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 3009-3019
-
-
Swanson, M.S.1
Malone, E.A.2
Winston, F.3
-
51
-
-
0026775612
-
SPT4, SPT5 and SPT6 interactions: Effects on transcription and viability in Saccharomyces cerevisiae
-
Swanson, M. S., and F. Winston. 1992. SPT4, SPT5 and SPT6 interactions: effects on transcription and viability in Saccharomyces cerevisiae. Genetics 132:325-336.
-
(1992)
Genetics
, vol.132
, pp. 325-336
-
-
Swanson, M.S.1
Winston, F.2
-
52
-
-
0034458956
-
The essential interaction between yeast mRNA capping enzyme subunits is not required for triphosphatase function in vivo
-
Takase, Y., T. Takagi, P. B. Komarnitsky, and S. Buratowski. 2000. The essential interaction between yeast mRNA capping enzyme subunits is not required for triphosphatase function in vivo. Mol. Cell. Biol. 20:9307-9316.
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 9307-9316
-
-
Takase, Y.1
Takagi, T.2
Komarnitsky, P.B.3
Buratowski, S.4
-
53
-
-
0024328155
-
Inhibition of in vivo and in vitro transcription by monoclonal antibodies prepared against wheat germ RNA polymerase II that react with the heptapeptide repeat of eukaryotic RNA polymerase II
-
Thompson, N., T. Steinberg, D. Aronson, and R. Burgess. 1989. Inhibition of in vivo and in vitro transcription by monoclonal antibodies prepared against wheat germ RNA polymerase II that react with the heptapeptide repeat of eukaryotic RNA polymerase II. J. Biol. Chem. 264:11511-11520.
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 11511-11520
-
-
Thompson, N.1
Steinberg, T.2
Aronson, D.3
Burgess, R.4
-
54
-
-
0033558873
-
Characterization of the ISWI subfamily of ATP-dependent chromatin remodeling factors in S. cerevisiae
-
Tsukiyama, T., J. Palmer, C. C. Landel, J. Shiloach, and C. Wu. 1999. Characterization of the ISWI subfamily of ATP-dependent chromatin remodeling factors in S. cerevisiae. Genes Dev. 13:686-697.
-
(1999)
Genes Dev.
, vol.13
, pp. 686-697
-
-
Tsukiyama, T.1
Palmer, J.2
Landel, C.C.3
Shiloach, J.4
Wu, C.5
-
55
-
-
0033791447
-
Proteasomal proteomics: Identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes
-
Verma, R., S. Chen, R. Feldman, D. Schieltz, J. Yates, J. Dohmen, and R. J. Deshaies. 2000. Proteasomal proteomics: identification of nucleotide-sensitive proteasome-interacting proteins by mass spectrometric analysis of affinity-purified proteasomes. Mol. Biol. Cell 11:3425-3439.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 3425-3439
-
-
Verma, R.1
Chen, S.2
Feldman, R.3
Schieltz, D.4
Yates, J.5
Dohmen, J.6
Deshaies, R.J.7
-
56
-
-
0033638442
-
FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH
-
Wada, T., G. Orphanides, J. Hasegawa, D. K. Kim, D. Shima, Y. Yamaguchi, A. Fukuda, K. Hisatake, S. Oh, D. Reinberg, and H. Handa. 2000. FACT relieves DSIF/NELF-mediated inhibition of transcriptional elongation and reveals functional differences between P-TEFb and TFIIH. Mol. Cell 5:1067-1072.
-
(2000)
Mol. Cell
, vol.5
, pp. 1067-1072
-
-
Wada, T.1
Orphanides, G.2
Hasegawa, J.3
Kim, D.K.4
Shima, D.5
Yamaguchi, Y.6
Fukuda, A.7
Hisatake, K.8
Oh, S.9
Reinberg, D.10
Handa, H.11
-
57
-
-
14444275279
-
DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs
-
Wada, T., T. Takagi, Y. Yamaguchi, A. Ferdous, T. Imai, S. Hirose, S. Sugimoto, K. Yano, G. A. Hartzog, F. Winston, S. Buratowski, and H. Handa. 1998. DSIF, a novel transcription elongation factor that regulates RNA polymerase II processivity, is composed of human Spt4 and Spt5 homologs. Genes Dev. 12:343-356.
-
(1998)
Genes Dev.
, vol.12
, pp. 343-356
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Ferdous, A.4
Imai, T.5
Hirose, S.6
Sugimoto, S.7
Yano, K.8
Hartzog, G.A.9
Winston, F.10
Buratowski, S.11
Handa, H.12
-
58
-
-
0032534814
-
Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro
-
Wada, T., T. Takagi, Y. Yamaguchi, D. Watanabe, and H. Handa. 1998. Evidence that P-TEFb alleviates the negative effect of DSIF on RNA polymerase II-dependent transcription in vitro. EMBO J. 17:7395-7403.
-
(1998)
EMBO J.
, vol.17
, pp. 7395-7403
-
-
Wada, T.1
Takagi, T.2
Yamaguchi, Y.3
Watanabe, D.4
Handa, H.5
-
59
-
-
0033566042
-
Transcription elongation factor hSPT5 stimulates mRNA capping
-
Wen, Y., and A. J. Shatkin. 1999. Transcription elongation factor hSPT5 stimulates mRNA capping. Genes Dev. 13:1774-1779.
-
(1999)
Genes Dev.
, vol.13
, pp. 1774-1779
-
-
Wen, Y.1
Shatkin, A.J.2
-
60
-
-
0000112508
-
Analysis of SPT genes: A genetic approach towards analysis of TFIID, histones and other transcription factors of yeast
-
S. L. McKnight and K. R. Yamamoto (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Winston, F. 1992. Analysis of SPT genes: a genetic approach towards analysis of TFIID, histones and other transcription factors of yeast, p. 1271-1293. In S. L. McKnight and K. R. Yamamoto (ed.), Transcriptional regulation. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(1992)
Transcriptional Regulation
, pp. 1271-1293
-
-
Winston, F.1
-
61
-
-
0028794516
-
Construction of a set of convenient S. cerevisiae strains that are isogenic to S288C
-
Winston, F., C. Dollard, and S. L. Ricupero-Hovasse. 1995. Construction of a set of convenient S. cerevisiae strains that are isogenic to S288C. Yeast 11:53-55.
-
(1995)
Yeast
, vol.11
, pp. 53-55
-
-
Winston, F.1
Dollard, C.2
Ricupero-Hovasse, S.L.3
-
62
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
Winzeler, E. A., D. D. Shoemaker, A. Astromoff, H. Liang, K. Anderson, B. Andre, R. Bangham, R. Benito, J. D. Boeke, H. Bussey, A. M. Chu, C. Connelly, K. Davis, F. Dietrich, S. W. Dow, M. El Bakkoury, F. Foury, S. H. Friend, E. Gentalen, G. Giaever, J. H. Hegemann, T. Jones, M. Laub, H. Liao, R. W. Davis, et al. 1999. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science 285:901-906.
-
(1999)
Science
, vol.285
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
Chu, A.M.11
Connelly, C.12
Davis, K.13
Dietrich, F.14
Dow, S.W.15
El Bakkoury, M.16
Foury, F.17
Friend, S.H.18
Gentalen, E.19
Giaever, G.20
Hegemann, J.H.21
Jones, T.22
Laub, M.23
Liao, H.24
Davis, R.W.25
more..
-
63
-
-
0033551430
-
Spt16 and Pob3 of Saccharomyces cerevisiae form an essential, abundant heterodimer that is nuclear, chromatin-associated, and copurifies with DNA polymerase alpha
-
Wittmeyer, J., L. Joss, and T. Formosa. 1999. Spt16 and Pob3 of Saccharomyces cerevisiae form an essential, abundant heterodimer that is nuclear, chromatin-associated, and copurifies with DNA polymerase alpha. Biochemistry 38:8961-8971.
-
(1999)
Biochemistry
, vol.38
, pp. 8961-8971
-
-
Wittmeyer, J.1
Joss, L.2
Formosa, T.3
-
64
-
-
0032571254
-
Role of the human homolog of the yeast transcription factor SPT5 in HIV-1 Tat-activation
-
Wu-Baer, F., W. S. Lane, and R. B. Gaynor. 1998. Role of the human homolog of the yeast transcription factor SPT5 in HIV-1 Tat-activation. J. Mol. Biol. 277:179-197.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 179-197
-
-
Wu-Baer, F.1
Lane, W.S.2
Gaynor, R.B.3
-
65
-
-
6644222520
-
Stimulation of RNA polymerase II elongation by hepatitis delta antigen
-
Yamaguchi, Y., J. Filipovska, K. Yano, A. Furuya, N. Inukai, T. Narita, T. Wada, S. Sugimoto, M. M. Konarska, and H. Handa. 2001. Stimulation of RNA polymerase II elongation by hepatitis delta antigen. Science 293:124-127.
-
(2001)
Science
, vol.293
, pp. 124-127
-
-
Yamaguchi, Y.1
Filipovska, J.2
Yano, K.3
Furuya, A.4
Inukai, N.5
Narita, T.6
Wada, T.7
Sugimoto, S.8
Konarska, M.M.9
Handa, H.10
-
66
-
-
0035116375
-
SPT genes: Key players in the regulation of transcription, chromatin structure and other cellular processes
-
Yamaguchi, Y., T. Narita, N. Inukai, T. Wada, and H. Handa. 2001. SPT genes: key players in the regulation of transcription, chromatin structure and other cellular processes. J. Biochem. (Tokyo) 129:185-191.
-
(2001)
J. Biochem. (Tokyo)
, vol.129
, pp. 185-191
-
-
Yamaguchi, Y.1
Narita, T.2
Inukai, N.3
Wada, T.4
Handa, H.5
-
67
-
-
0033515521
-
NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation
-
Yamaguchi, Y., T. Takagi, T. Wada, K. Yano, A. Furuya, S. Sugimoto, J. Hasegawa, and H. Handa. 1999. NELF, a multisubunit complex containing RD, cooperates with DSIF to repress RNA polymerase II elongation. Cell 97:41-51.
-
(1999)
Cell
, vol.97
, pp. 41-51
-
-
Yamaguchi, Y.1
Takagi, T.2
Wada, T.3
Yano, K.4
Furuya, A.5
Sugimoto, S.6
Hasegawa, J.7
Handa, H.8
-
68
-
-
0030660264
-
Mammalian capping enzyme complements mutant Saccharomyces cerevisiae lacking mRNA guanylyltransferase and selectively binds the elongating form of RNA polymerase II
-
Yue, Z., E. Maldonado, R. Pillutla, H. Cho, D. Reinberg, and A. J. Shatkin. 1997. Mammalian capping enzyme complements mutant Saccharomyces cerevisiae lacking mRNA guanylyltransferase and selectively binds the elongating form of RNA polymerase II. Proc. Natl. Acad. Sci. USA 94:12898-12903.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 12898-12903
-
-
Yue, Z.1
Maldonado, E.2
Pillutla, R.3
Cho, H.4
Reinberg, D.5
Shatkin, A.J.6
|