Strange bedfellows: Polyadenylation factors at the promoter

Genes and Development

Volumn 17, Issue 11, 2003, Pages 1321-1327

  Calvo, Olga ^b   Manley, James L ^a  

^a Columbia University ^*  (United States)

^b CENTRE FOR GENOMIC REGULATION CRG   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CHICKEN OVALBUMIN UPSTREAM PROMOTER TRANSCRIPTION FACTOR; MESSENGER RNA; POLYADENYLATION FACTOR; RNA POLYMERASE II; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

CARBOXY TERMINAL SEQUENCE; ENZYME ACTIVITY; GENE EXPRESSION; NONHUMAN; POLYADENYLATION; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; REVIEW; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

GALLUS GALLUS;

EID: 0037948220     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.1093603     Document Type: Review

References (43)

1. Aranda, A. and Proudfoot, N. 2001. Transcriptional termination factors for RNA polymerase II in yeast. Mol. Cell 7: 1003-1011.
2. Artsimovitch, I. and Landick, R. 2002. The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand. Cell 109: 193-203.
3. Barilla, D., Lee, B.A., and Proudfoot, N.J. 2001. Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. 98: 445-450.
4. Bentley, D. 2002. The mRNA assembly line: Transcription and processing machines in the same factory. Curr. Opin. Cell. Biol. 14: 336-342.
5. Birse, C.E., Minvielle-Sebastia, L., Lee, B.A., Keller, W., and Proudfoot, N.J. 1998. Coupling termination of transcription to messenger RNA maturation in yeast. Science 280: 298-301.
6. Calvo, O. and Manley, J.L. 2001. Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination. Mol. Cell 7: 1013-1023.
7. Dantonel, J.C., Murthy, K.G., Manley, J.L., and Tora, L. 1997. Transcription factor TFIID recruits factor CPSF for formation of 3′ end of mRNA. Nature 389: 399-402.
8. Dichtl, B., Blank, D., Sadowski, M., Hubner, W., Weiser, S., and Keller, W. 2002a. Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination. EMBO J. 21: 4125-4135.
9. Dichtl, B., Blank, D., Ohnacker, M., Friedlein, A., Roeder, D., Langen, H., and Keller, W., 2002b. A role for SSU72 in balancing RNA polymerase II transcription elongation and termination. Mol. Cell 10: 1139-1150.
10. Dower, K. and Rosbash, M. 2002. T7 RNA polymerase-directed transcripts are processed in yeast and link 3′ end formation to mRNA nuclear export. RNA 8: 686-697.
11. Fong, Y.W. and Zhou, Q. 2001. Stimulatory effect of splicing factors on transcriptional elongation. Nature 414: 929-933.
12. Gall, J.G., Bellini, M., Wu, Z., and Murphy, C. 1999. Assembly of the nuclear transcription and processing machinery: Cajal bodies (coiled bodies) and transcriptosomes. Mol. Biol. Cell 10: 4385-4402.
13. Ganem, C., Devaux, F., Torchet, C., Jacq, C., Quevillon-Cheruel, S., Labesse, G., Facca, C., and Faye, G. 2003. Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast. EMBO J. 22: 1588-1598.
14. Gavin, A.C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J.M., Michon, A.M., Cruciat, C.M., et al. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147.
15. Ge, H. and Roeder, R.G. 1994. Purification, cloning, and characterization of a human coactivator, PC4, that mediates transcriptional activation of class II genes. Cell 78: 513-523.
16. He, X., Khan, A.U., Cheng, H., Pappas Jr., D.L., Hampsey, M., and Moore, C.L. 2003. Functional interactions between the transcription and mRNA 3′ end processing machineries mediated by Ssu72 and Sub1. Genes & Dev. 17: 1030-1042.
17. Henry, N.L., Bushnell, D.A., and Kornberg, R.D. 1996. A yeast transcriptional stimulatory protein similar to human PC4. J. Biol. Chem. 271: 21842-21847.
18. Hirose, Y. and Manley, J.L. 1998. RNA polymerase II is an essential mRNA polyadenylation factor. Nature 395: 93-96.
19. -. 2000. RNA polymerase II and the integration of nuclear events. Genes & Dev. 14: 1415-1429.
20. Knaus, R., Pollock, R., and Guarente, L. 1996. Yeast SUB1 is a suppressor of TFIIB mutations and has homology to the human co-activator PC4. EMBO J. 15: 1933-1940.
21. Kretzschmar, M., Kaiser, K., Lottspeich, F., and Meisterernst, M. 1994. A novel mediator of class II gene transcription with homology to viral immediate-early transcriptional regulators. Cell 78: 525-534.
22. Kwek, K.Y., Murphy, S., Furger, A., Thomas, B., O'Gorman, W., Kimura, H., Proudfoot, N.J., and Akoulitchev, A. 2002. U1 snRNA associates with TFIIH and regulates transcriptional initiation. Nat. Struct. Biol. 9: 800-805.
23. Licatalosi, D.D., Geiger, G., Minet, M., Schroeder, S., Cilli, K., McNeil, J.B., and Bentley, D.L. 2002. Functional interaction of yeast pre-mRNA 3′ end processing factors with RNA polymerase II. Mol. Cell 9: 1101-1111.
24. Malik, S., Guermah, M., and Roeder, R.G. 1998. A dynamic model for PC4 coactivator function in RNA polymerase II transcription. Proc. Natl. Acad. Sci. 95: 2192-2197.
25. Maniatis, T. and Reed, R. 2002. An extensive network of coupling among gene expression machines. Nature 416: 499-506.
26. Manley, J.L. 2002. Nuclear coupling: RNA processing reaches back to transcription. Nat. Struct. Biol. 9: 790-791.
27. McCracken, S., Fong, N., Yankulov, K., Ballantyne, S., Pan, G., Greenblatt, J., Patterson, S.D., Wickens, M., and Bentley, D.L. 1997. The carboxy-terminal domain of RNA polymerase II couples mRNA processing to transcription. Nature 385: 357-361.
28. Meinhart, A., Silberzahn, T., and Cramer, P. 2003. The mRNA transcription/processing factor Ssu72 is a potential tyrosine phosphatase. J. Biol. Chem. (in press).
29. Murthy, K.G. and Manley, J.L. 1995. The 160-kD subunit of human cleavage-polyadenylation specificity factor coordinates pre-mRNA 3′-end formation. Genes & Dev. 9: 2672-2683.
30. Myers, L.C., Lacomis, L., Erdjument-Bromage, H., and Tempst, P. 2002. The yeast capping enzyme represses RNA polymerase II transcription. Mol. Cell 10: 883-894.
31. Osheim, Y.N., Sikes, M.L., and Beyer, A.L. 2002. EM visualization of Pol II genes in Drosophila: Most genes terminate without prior 3′ end cleavage of nascent transcripts. Chromosoma 111: 1-12.
32. Preker, P.J., Ohnacker, M., Minvielle-Sebstia, L., and Keller, W. 1997. A multisubunit 3′ end processing factor from yeast containing poly(A) polymerase and homologues of the subunits of mammalian cleavage and polyadenylation specificity factor. EMBO J. 16: 4727-4737.
33. Proudfoot, N.J. 1989. How RNA polymerase II terminates transcription in higher eukaryotes. Trends Biochem. Sci. 14: 105-110.
34. Proudfoot, N.J., Furger, A., and Dye, M.J. 2002. Integrating mRNA processing with transcription. Cell 108: 501-512.
35. Rodriguez, C.R., Cho, E.J., Keogh, M.C., Moore, C.L., Greenleaf, A.L., and Buratowski, S. 2000. Kin28, the TFIIH-associated carboxy-terminal domain kinase, facilitates the recruitment of mRNA processing machinery to RNA polymerase II. Mol. Cell. Biol. 20: 104-112.
36. Santangelo, T.J. and Roberts, J.W. 2002. RfaH, a bacterial transcription antiterminator. Mol. Cell 9: 698-700.
37. Sun, Z.W. and Hampsey, M. 1996. Synthetic enhancement of a TFIIB defect by a mutation in SSU72, an essential yeast gene encoding a novel protein that affects transcription start site selection in vivo. Mol. Cell. Biol. 16: 1557-1566.
38. Takagaki, Y. and Manley, J.L. 2000. Complex protein interactions within the human polyadenylation machinery identify a novel component. Mol. Cell. Biol. 20: 1515-1525.
39. Werten, S., Stelzer, G., Goppelt, A., Langen, F.M., Gros, P., Timmers, H.T., Van der Vliet, P.C., and Meisterernst, M. 1998. Interaction of PC4 with melted DNA inhibits transcription. EMBO J. 17: 5103-5111.
40. Werten, S., Wechselberger, R., Boelens, R., van der Vliet, P.C., and Kaptein, R. 1999. Identification of the single-stranded DNA binding surface of the transcriptional coactivator PC4 by NMR. J. Biol. Chem. 274: 3693-3699.
41. Woychik, N.A. and Hampsey, M. 2002. The RNA polymerase II machinery: Structure illuminates function. Cell 108: 453-463.
42. Wu, W.H., Pinto, I., Chen, B.S., and Hampsey, M. 1999. Mutational analysis of yeast TFIIB. A functional relationship between Ssu72 and Sub1/Tsp1 defined by allele-specific interactions with TFIIB. Genetics 153: 643-652.
43. Zhao, J., Kessler, M., Helmling, S., O'Connor, J.P., and Moore, C. 1999. Pta1, a component of yeast CF II, is required for both cleavage and poly(A) addition of mRNA precursor. Mol. Cell. Biol. 19: 7733-7740.