Tfo1: An Ac-like transposon from the plant pathogenic fungus Fusarium oxysporum

Molecular and General Genetics

Volumn 258, Issue 6, 1998, Pages 599-607

  Okuda, M ^a,c   Ikeda, K ^a   Namiki, F ^b   Nishi, K ^b   Tsuge, T ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b NATIONAL AGRICULTURAL RESEARCH CENTER FOR KYUSHU OKINAWA REGION   (Japan)

^c NATIONAL AGRICULTURAL RESEARCH CENTER FOR WESTERN REGION   (Japan)

Author keywords

Fusarium oxysporum; Repetitive DNA; Transposon

Indexed keywords

DNA FRAGMENT; FUNGAL DNA; REPETITIVE DNA; TRANSPOSASE;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; DNA STRUCTURE; FUNGAL GENETICS; FUSARIUM OXYSPORUM; GENE LIBRARY; GENETIC TRANSCRIPTION; MAIZE; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; SOUTHERN BLOTTING; TRANSPOSON;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; DNA TRANSPOSABLE ELEMENTS; DNA, FUNGAL; FUSARIUM; GENE DOSAGE; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; REPETITIVE SEQUENCES, NUCLEIC ACID; RESTRICTION MAPPING; RNA, FUNGAL; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; TRANSPOSASES;

CUCURBITA; FUNGI; FUSARIUM; FUSARIUM OXYSPORUM; FUSARIUM OXYSPORUM F. SP. LAGENARIAE; FUSARIUM SP.; LAGENARIA SICERARIA; MYXOGASTRIA; ZEA MAYS;

EID: 0031848525     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050773     Document Type: Article

References (47)

1. Adachi Y, Watanabe H, Tanabe K, Doke N, Nishimura S, Tsuge T (1993) Nuclear ribosomal DNA as a probe for genetic variability in the Japanese pear pathotype of Alternaria alternata. Appl Environ Microbiol 59:3197-3205
2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment sequence tool. J Mol Biol 215:403-410
3. Anaya N, Roncero MIG (1995) skippy, a retrotransposon from the fungal plant pathogen Fusarium oxysporum. Mol Gen Genet 249:637-647
4. Armstrong GM, Armstrong JK (1981) Formae speciales and races of Fusarium oxysporum causing wilt disease. In: Nelson PE, Toussoun TA, Cook RJ (eds) Fusarium: disease, biology, and taxonomy. Pennsylvania State University Press, University Park, pp 391-399
5. Atkinson PW, Warren WD, O'Brochta DA (1993) The hobo transposable element of Drosophila can be cross-mobilized in houseflies and excises like the Ac element of maize. Proc Natl Acad Sci USA 90:9693-9697
6. Balcells L, Swinburne J, Coupland G (1991) Transposons as tools for the isolation of plant genes. Trends Biol Tech 9:31-37
7. Borel JF, Feurer C, Gubler HU, Stèhelin H (1976) Biological effects of cyclosporin A. Agents Actions 6:468-475
8. Brezinsky L, Wang GVL, Humphreys T, Huntt J (1990) The transposable element Uhu from Hawaiian Drosophila a member of the widely dispersed class of Tc1-like transposons. Nucleic Acids Res 18:2053-2059
9. Burnett JH (1984) Aspects of Fusarium genetics. In: Moss MO, Smith JE (eds) The applied mycology of fusarium. Cambridge University Press, New York, pp 39-69
10. Calvi BR, Hong TJ, Findley SD, Gelbart WM (1991) Evidence for a common evolutionary origin of inverted repeat transposons in Drosophila and plants: hobo, Activator, and Tam3. Cell 66:465-471
11. Daboussi MJ (1996) Fungal transposable elements: generators of diversity and genetic tools. J Genet 75:325-339
12. Daboussi MJ, Langin T, Brygoo Y (1992) Fot1, a new family of fungal transposable elements. Mol Gen Genet 232:12-16
13. Döring HP, Tillmann E, Starlinger P (1984) DNA sequence of the maize transposable element Dissociation. Nature 307:127-131
14. Essers L, Kunze R (1995) Transposable elements Bg (Zea mays) and Tag1 (Arabidopsis thaliana) encode protein sequences with homology to Ac-like transposases. Maize Genet Coop Newslett 69:38-41
15. Fassbender S, Kück U (1995) Reverse transcriptase activities in mycelial fungi. In: Kück U (ed) The Mycota II. Genetics and biotechnology. Springer, Heidelberg, pp 247-259
16. Fedoroff N, Wessler S, Shure M (1983) Isolation of the transposable maize controlling elements Ac and Ds. Cell 35:235-242
17. Feinberg AP, Vogelstein B (1983) A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 136:6-13
18. Finnegan DJ (1989) Eukaryotic transposable elements and genome evolution. Trends Genet 5:103-107
19. Flavell AJ (1995) Retroelements, reverse transcriptase and evolution. Com Biochem Physiol 110B:3-15
20. Flavell AJ, Pearce SR, Kumar A (1994) Plant transposable elements and the genome. Curr Opin Genet Dev 4:838-844
21. Gierl A, Saedler H (1992) Plant-transposable elements and gene tagging. Plant Mol Biol 19:39-49
22. Green MM (1988) Mobile DNA elements and spontaneous mutation. In: Lambert ME, McDonald JF, Weinstein IB (eds) Eukaryotic transposable elements as mutagenic agents. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 41-50
23. Haring MA, Rommens CMT, Nijkamp HJJ, Hille J (1991) The use of transgenic plants to understand transposition mechanisms and to develop transposon tagging strategies. Plant Mol Biol 16:449-461
24. Hehl R, Nacken WKF, Krause A, Saedler H, Sommer H (1991) Structural analysis of Tam3, a transposable element from Antirrhinum majus, reveals homologies to the Ac element from maize. Plant Mol Biol 16:369-371
25. Henikoff S, Plasterk RHA (1988) Related transposons in C. elegans and D. melanogaster. Nucleic Acids Res 16:6234
26. Julien J, Poirier-Hamon S, Brygoo Y (1992) Foret1, a reverse transcriptase-like sequence in the filamentous fungus Fusarium oxysporum. Nucleic Acids Res 20:3933-3937
27. Kaneko I, Katsuya S, Tsuge T (1997) Structural analysis of the plasmid pAAT56 of the filamentous fungus Alternaria alternate. Gene 203:51-57
28. Kempken F, Kück U (1996) restless, an active Ac-like transposon from the fungus Tolypocladium inflatum: structure, expression, and alternative RNA splicing. Mol Cell Biol 16:6563-6572
29. Koga A, Suzuki M, Inagaki H, Bessho Y, Hori H (1996) Transposable element in fish. Nature 383:30
30. Kunze R (1996) The maize transposable element Activator (Ac). In: Saedler H, Gierl A (eds) Transposable elements. Springer, Heidelberg, pp 161-194
31. Langin T, Capy P, Daboussi M-J (1995) The transposable element impala, a fungal member of the Tc1-mariner superfamily. Mol Gen Genet 246:19-28
32. McClintock B (1951) Chromosome organization and genic expression. Cold Spring Harbor Symp Quant Biol 16:13-47
33. McDonald JF (1993) Evolution and consequences of transposable elements. Curr Opin Genet Dev 3:855-864
34. Müller-Neumann M, Yoder JI, Starlinger P (1984) The DNA sequence of the transposable element Ac of Zea mays L. Mol Gen Genet 198:19-24
35. Namiki F, Shiomi T, Kayamura T, Tsuge T (1994) Characterization of the formae speciales of Fusarium oxysporum causing wilts of cucurbits by DNA fingerprinting with nuclear repetitive DNA sequences. Appl Environ Microbiol 60:2684-2691
36. Orbach MJ, Vollrath D, Davis RW, Yanofsky C (1988) An electrophoretic karyotype of Neurospora crassa. Mol Cell Biol 8:1469-1473
37. Pohlman RF, Fedoroff NV, Messing J (1984) The nucleotide sequence of the maize controlling element Activator. Cell 37:635-643
38. Rosenzweig B, Liao LW, Hirsh D (1983) Sequence of the C. elegans transposable element Tc1. Nucleic Acids Res 11:4201-4209
39. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual (2nd edn). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
40. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
41. Shiotani H, Tsuge T (1995) Efficient gene targeting in the filamentous fungus Alternaria alternata. Mol Gen Genet 248:142-150
42. Smith PA, Corces VG (1991) Drosophila transposable elements: mechanisms of mutagenesis and interactions with the host genome. Adv Genet 29:229-299
43. Snyder WC, Hansen HN (1940) The species concept in Fusarium. Amer J Bot 27:64-67
44. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
45. Timberlake WE (1986) Isolation of stage- and cell-specific genes from fungi. In: Bailey JA (ed) Biology and molecular biology of plant pathogen interactions. NATO ASI Series vol. H1, Springer, Berlin, pp 343-357
46. Toyota K, Tsuge T, Kimura M (1992) Potential application of genetic transformants of Fusarium oxysporum f. sp. raphani for assessing fungal autecology. Soil Biol Biochem 24:489-494
47. Triglia T, Peterson MG, Kemp DJ (1988) A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucleic Acids Res 16:8186