DNA chips for yeast biotechnology. The case of wine yeasts

Journal of Biotechnology

Volumn 98, Issue 2-3, 2002, Pages 227-241

  Pérez Ortín, José E ^a,b   García Martínez, José ^a   Alberola, Trinidad M ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

^b NONE   (Spain)

Author keywords

DNA chip; DNA microarray; Saccharomyces cerevisiae; Wine yeast

Indexed keywords

CELLS; DNA; MICROORGANISMS; WINE; YEAST;

WINE YEASTS;

BIOTECHNOLOGY;

ANTIFUNGAL AGENT; FUNGAL DNA; GENOMIC DNA;

BIOTECHNOLOGY; CONFERENCE PAPER; CYTOLOGY; DNA MICROARRAY; DRUG EFFECT; EUKARYOTE; EXPERIMENTAL MODEL; FUNGAL GENE; FUNGAL METABOLISM; FUNGAL STRAIN; GENE EXPRESSION; GENE FUNCTION; GENE SEQUENCE; GENOME ANALYSIS; GENOMICS; LABORATORY; MICROBIOLOGY; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; STRAIN DIFFERENCE; WINE; WINE INDUSTRY; YEAST;

CARBOHYDRATE METABOLISM; ETHANOL; EVOLUTION; FERMENTATION; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENOME, FUNGAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION, GENETIC; WINE;

EUKARYOTA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 0037174293     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1656(02)00134-7     Document Type: Conference Paper

References (103)

1. Mitotic recombination in yeast: Elements controlling its incidence
2. Global gene expression during short-term ethanol stress in Saccharomyces cerevisiae
3. Stress tolerance: The key to effective strains of industrial baker's yeast
4. Functional genomic analysis of a commercial wine yeast strain of Saccharomyces cerevisiae under differing nitrogen conditions
5. The chromosomal constitution of wine strains of Saccharomyces cerevisiae
6. Genome-wide expression patterns in Saccharomyces cerevisiae: Comparison of drug treatments and genetic alterations affecting biosynthesis of ergosterol
7. Genetic improvement of wine yeast
8. Genetic constitution of industrial yeast
9. Analysis of the chromosomal DNA polymorphism of wine strains of Saccharomyces cerevisiae
10. Stuck and sluggish fermentations
11. Gene expression data analysis
12. Predicting gene regulatory elements in silico on a genomic scale
13. Building a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis
14. Role of thioredoxin reductase in the Yap1p-dependent response to oxidative stress in Saccharomyces cerevisiae
15. Analysis of the stress resistance of commercial wine yeast strains
16. Analysing genetic information with DNA arrays
17. Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis
18. Parallel analysis of genetic selections using whole genome oligonucleotide arrays
19. The transcriptional program of sporulation in budding yeast
20. Chromosomal reorganization during meiosis of Saccharomyces cerevisiae baker's yeasts
21. Chromosomal polymorphism and adaptation to specific industrial environments of Saccharomyces strains
22. Factors which affect the frequency of sporulation and tetrad formation in Saccharomyces cerevisiae baker's yeasts
23. Genome-wide transcriptional analysis in S. cerevisiae by mini-array membrane hybridization
24. Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants
25. Exploring the metabolic and genetic control of gene expression on a genomic scale
26. Expression profiling using cDNA microarrays
27. European Functional Analysis Network (EUROFAN) and the functional analysis of the Saccharomyces cerevisiae genome
28. Stress-controlled transcription factors, stress-induced genes and stress tolerance in budding yeast
29. Systematic changes in gene expression patterns following adaptive evolution in yeast
30. Ploidy regulation of gene expression
31. Genomic expression programs in the response of yeast cells to environmental changes
32. Genomic profiling of drug sensitivities via induced haploinsufficiency
33. Life with 6000 genes
34. The yeast genome directory
35. SSU1-R, a sulphite resistance gene of wine yeast, is an allele of SSU1 with a different upstream sequence
36. Identification of the copper regulon in Saccharomyces cerevisiae by DNA microarrays
37. Determination of the relative ploidy in different Saccharomyces cerevisiae strains used for fermentation and 'flor' film ageing of dry sherry-type wines
38. Analysis of yeast's ORF upstream regions by parallel processing, microarrays, and computational methods
39. Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins
40. Whole genome analysis of a wine yeast strain
41. Transcriptional profiling on all open reading frames of Saccharomyces cerevisiae
42. Dissecting the regulatory circuitry of a eukaryotic genome
43. DNA microarrays for expression profiling
44. Functional discovery via a compendium of expression profiles
45. Widespread aneuploidy revealed by DNA microarray expression profiling
46. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
47. An inverse correlation between stress resistance and stuck fermentations in wine yeasts. A molecular study
48. Global response of Saccharomyces cerevisiae to an alkylating agent
49. Regulatory networks revealed by transcriptional profiling of damaged Saccharomyces cerevisiae cells: Rpn4 links base excision repair with proteasomes
50. Global expression profiling of yeast treated with an inhibitor of amino acid biosynthesis, sulfometuron methyl
51. Brewing and distilling yeasts
52. Tempo and mode of Ty evolution in Saccharomyces cerevisieae
53. Cdc34 and the F-box protein Met30 are required for degradation of the Cdk-inhibitory kinase Swe1
54. Primary structure and transcription of an amplified genetic locus: The CUP1 locus of yeast
55. Genetics of brewing yeasts
56. An unusual eukaryotic protein phosphatase required for transcription by RNA polymerase II and CTD dephosphorylation in S. cerevisiae
57. Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source
58. Wine-making yeasts
59. Misconceptions about the energy metabolism of Saccharomyces cerevisiae
60. Yeast microarrays for genome wide parallel genetic and gene expression analysis
61. Redundant roles for the TFIID and SAGA complexes in global transcription
62. Cell-cycle checkpoints that ensure coordination between nuclear and cytoplasmic events in Saccharomyces cerevisiae
63. Protection from nitrosative stress by yeast flavohaemoglobin
64. Chromosomal rearrangements during vegetative growth of a wild strain of Saccharomyces cerevisiae
65. Understanding the growth phenotype of the yeast gcr1 mutant in terms of global genomic expression patterns
66. The origin and domestication of the wine yeast Saccharomyces cerevisiae
67. The role of the genome project in determining gene function: Insight for model organisms
68. Evolution and variation of the yeast (Saccharomyces) genome
69. Genealogy of principal strains of the yeast genetic stock center
70. On the origins of wine yeast
71. Genome renewal: A new phenomenon revealed from a genetic study of 43 strains of Saccharomyces cerevisiae derived from natural fermentation of grape musts
72. Mediator protein mutations that selectively abolish activated transcription
73. Technical assessment of the Affymetrix yeast expression Genechip YE6100 platform in a heterologous model of genes that confer resistance to antimalarial drugs in yeast
74. Genetic identification of biological species in the Saccharomyces sensu stricto complex
75. Natural polyploidization of some cultured yeast Saccharomyces sensu stricto: Auto- and allotetraploidy
76. New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis
77. SSU1 mediates sulphite efflux in Saccharomyces cerevisiae
78. SCF(Met30)-mediated control of the transcriptional activator Met4 is required for the G(1)-S transition
79. Tailoring wine yeast for the new millennium: Novel approaches to the ancient art of winemaking
80. The core meiotic transcriptome in budding yeasts
81. An optimized method to obtain stable food-safe recombinant wine yeast strains
82. Stress response and expression patterns in wine fermentations of yeast genes induced at the diauxic shift
83. Expression levels and patterns of glycolytic yeast genes during wine fermentation
84. Mitotic recombination and genetic changes in Saccharomyces cerevisiae during wine fermentation
85. The application of molecular techniques in wine microbiology
86. Dry yeast strain for use in fermentation of Alicante wines: Selection and DNA patterns
87. Examination of the transcriptional specificity of an enological yeast. A pilot experiment on the chromosome-III right arm
88. Multiple Ty-mediated chromosomal translocations lead to karyotype changes in a wine strain of Saccharomyces cerevisiae
89. Stationary-phase gene expression in Saccharomyces cerevisiae during wine fermentation
90. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
91. Feedback-regulated degradation of the transcriptional activator Met4 is triggered by the SCF(Met30) complex
92. Enological fermentation kinetics of an isogenic ploidy series derived form an industrial Saccharomyces cerevisiae strain
93. Genetic improvement of wine yeast
94. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
95. Fine-mapping and functional characterization of a complex genetic trait
96. Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae
97. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
98. DNA microarrays: Raising the profile
99. Yeast metallothionein. Sequence and metal-binding properties
100. Direct allelic variation scanning of the yeast genome
101. Genome-wide expression monitoring in Saccharomyces cerevisiae
102. Biomedical discovery with DNA arrays
103. Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth