메뉴 건너뛰기




Volumn 2, Issue 3, 1998, Pages 404-410

Analysing genetic information with DNA arrays

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGODEOXYRIBONUCLEOTIDE;

EID: 0032085014     PISSN: 13675931     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1367-5931(98)80016-1     Document Type: Article
Times cited : (42)

References (39)
  • 1
    • 0029962816 scopus 로고    scopus 로고
    • DNA chips: Analysing sequence by hybridization to oligonucleotides on a large scale
    • Southern EM: DNA chips: analysing sequence by hybridization to oligonucleotides on a large scale. Trends Genet 1996, 12:110-115.
    • (1996) Trends Genet , vol.12 , pp. 110-115
    • Southern, E.M.1
  • 2
    • 0030862620 scopus 로고    scopus 로고
    • Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays
    • Shchepinov MS, Case-Green SC, Southern EM: Steric factors influencing hybridisation of nucleic acids to oligonucleotide arrays. Nucleic Acids Res 1997, 25:1155-1161.
    • (1997) Nucleic Acids Res , vol.25 , pp. 1155-1161
    • Shchepinov, M.S.1    Case-Green, S.C.2    Southern, E.M.3
  • 3
    • 0028618275 scopus 로고
    • Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports
    • Guo Z, Guilfoyle RA, Thiel AJ, Wang R, Smith LM: Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports. Nucleic Acids Res 1994, 22:5456-5465.
    • (1994) Nucleic Acids Res , vol.22 , pp. 5456-5465
    • Guo, Z.1    Guilfoyle, R.A.2    Thiel, A.J.3    Wang, R.4    Smith, L.M.5
  • 4
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M, Shalon D, Davis RW, Brown PO: Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995, 270:467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 5
    • 0031553975 scopus 로고    scopus 로고
    • Covalent Attachment of hybridizable oligonucleotides to glass supports
    • Joos B, Kuster H, Cone R: Covalent Attachment of hybridizable oligonucleotides to glass supports. Anal Chem 1997, 247:96-101.
    • (1997) Anal Chem , vol.247 , pp. 96-101
    • Joos, B.1    Kuster, H.2    Cone, R.3
  • 6
    • 0000561129 scopus 로고    scopus 로고
    • High-Density, Covalent Attachment of DNA to Silicon Wafers for Analysis by MALDI-TOF Mass Spectrometry
    • O'Donnell RJ, Tang K, Koster H, Smith CL, Cantor CR: High-Density, Covalent Attachment of DNA to Silicon Wafers for Analysis by MALDI-TOF Mass Spectrometry. Anal Chem 1997, 69:2438-2443.
    • (1997) Anal Chem , vol.69 , pp. 2438-2443
    • O'Donnell, R.J.1    Tang, K.2    Koster, H.3    Smith, C.L.4    Cantor, C.R.5
  • 8
    • 0031554899 scopus 로고    scopus 로고
    • Fiberoptic DNA sensor array capable of detecting point mutations
    • Healey BG, Matson RS, Walt DR: Fiberoptic DNA sensor array capable of detecting point mutations. Anal Biochem 1997, 251:270-279. A paper describing the first fiber optic DNA sensor. Oligonucleotides baring terminal amino groups were coupled to fibers and used in real-time monitoring experiments. The ability to discriminate point mutations were shown.
    • (1997) Anal Biochem , vol.251 , pp. 270-279
    • Healey, B.G.1    Matson, R.S.2    Walt, D.R.3
  • 9
    • 0031029961 scopus 로고    scopus 로고
    • Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control
    • Sosnowski RG, Tu E, Butler WF, O'Connell JP, Heller MJ: Rapid determination of single base mismatch mutations in DNA hybrids by direct electric field control. Proc Natl Acad Sci USA 1997, 94:1119-1123. The authors describe electrical manipulation of DNA to produce novel arrays and to identify mismatches in hybridised duplexes. This could be easily automated but individual connections to a large array of electrodes could be difficult.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 1119-1123
    • Sosnowski, R.G.1    Tu, E.2    Butler, W.F.3    O'Connell, J.P.4    Heller, M.J.5
  • 11
    • 0030804734 scopus 로고    scopus 로고
    • Oligonucleotide microsynthesis of a 200-mer and of one-dimensional arrays on a surface hydroxylated polypropylene tape
    • Bader R, Hinz M, Schu B, Seliger H: Oligonucleotide microsynthesis of a 200-mer and of one-dimensional arrays on a surface hydroxylated polypropylene tape. Nucleosides Nucleotides 1997, 16:829-833.
    • (1997) Nucleosides Nucleotides , vol.16 , pp. 829-833
    • Bader, R.1    Hinz, M.2    Schu, B.3    Seliger, H.4
  • 12
    • 0026742791 scopus 로고
    • Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: Evaluation using experimental models
    • Southern EM, Maskos U, Elder JK: Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: evaluation using experimental models. Genomics 1992, 13:1008-1017.
    • (1992) Genomics , vol.13 , pp. 1008-1017
    • Southern, E.M.1    Maskos, U.2    Elder, J.K.3
  • 15
    • 0030758618 scopus 로고    scopus 로고
    • Hybridisation based DNA screening on peptide nucleic acid (PNA) oligomer arrays
    • Weiler J, Gausepohl H, Hauser N, Jensen NJ, Hoheisel JD: Hybridisation based DNA screening on peptide nucleic acid (PNA) oligomer arrays. Nucleic Acids Res 1997, 25:2792-2799. Investigations of nucleic acid backbone analogues such as that of PNA, described here, may lead to arrays with more desirable hybridisation behaviour.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2792-2799
    • Weiler, J.1    Gausepohl, H.2    Hauser, N.3    Jensen, N.J.4    Hoheisel, J.D.5
  • 16
    • 0030758142 scopus 로고    scopus 로고
    • The efficiency of light-directed synthesis of DNA arrays on glass substrates
    • McGall GH, Barone AD, Diggelmann M, Fodor SPA, Gentalen E, Ngo N: The efficiency of light-directed synthesis of DNA arrays on glass substrates. J Am Chem Soc 1997, 119:5081-5090. Characterising the products from 'on-chip' synthesis is important but difficult. Where stepwise yields are lowered the length of oligonucleotide probe that can be efficiently synthesised is limited.
    • (1997) J Am Chem Soc , vol.119 , pp. 5081-5090
    • McGall, G.H.1    Barone, A.D.2    Diggelmann, M.3    Spa, F.4    Gentalen, E.5    Ngo, N.6
  • 17
    • 0029915406 scopus 로고    scopus 로고
    • Cystic fibrosis mutation detection by hybridisation to light-generated DNA probe arrays
    • Cronin MT, Fucini RV, Kim SM, Masino RS, Wespi RM, Miyada CG: Cystic fibrosis mutation detection by hybridisation to light-generated DNA probe arrays. Hum Mutat 1996, 7:244-255.
    • (1996) Hum Mutat , vol.7 , pp. 244-255
    • Cronin, M.T.1    Fucini, R.V.2    Kim, S.M.3    Masino, R.S.4    Wespi, R.M.5    Miyada, C.G.6
  • 18
    • 0029829670 scopus 로고    scopus 로고
    • Detection of Heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis
    • Hacia JC, Brody LC, Chee MS, Fodor SPA, Collins FS: Detection of Heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis. Nat Genet 1996, 14:441-447. This paper offers a useful appraisal of the application of DNA arrays to mutation detection. The 3.45-kb exon 11 of the breast cancer gene, BRCA1 was scanned for heterozygous mutations in fifteen patient and twenty control samples. Normalisation to wild type sequence was done simultaneously using two-colour fluorescence.
    • (1996) Nat Genet , vol.14 , pp. 441-447
    • Hacia, J.C.1    Brody, L.C.2    Chee, M.S.3    Fodor, S.4    Collins, F.S.5
  • 19
    • 15844378825 scopus 로고    scopus 로고
    • Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays
    • Kozal MJ, Shah N, Shen N, Yang R, Fucini R, Merigan TC, Richman DD, Morris D, Hubbell E, Chee M, Gingeras TR: Extensive polymorphisms observed in HIV-1 clade B protease gene using high-density oligonucleotide arrays. Nat Med 1996, 2:753-759. In this paper, oligonucleotide arrays and conventional sequencing have been compared side by side in the determination of variation in the known HIV protease gene sequence. A large degree of natural variation was found, which suggests that different patients are likely to manifest differential response to protease inhibitors.
    • (1996) Nat Med , vol.2 , pp. 753-759
    • Kozal, M.J.1    Shah, N.2    Shen, N.3    Yang, R.4    Fucini, R.5    Merigan, T.C.6    Richman, D.D.7    Morris, D.8    Hubbell, E.9    Chee, M.10    Gingeras, T.R.11
  • 20
    • 0030478531 scopus 로고    scopus 로고
    • Light-directed synthesis of high-density oligonucleotide arrays using semiconductor photoresists
    • McGall G, Labadie J, Brock P, Wallraff G, Nguyen T, Hinsberg W: Light-directed synthesis of high-density oligonucleotide arrays using semiconductor photoresists. Proc Natl Acad Sci USA 1996 93:13555-13560. A new method for the synthesis of high-density oligonucleotide arrays. Standard solid-phase oligonucleotide synthesis was combined with a photoimageable polymeric photoresist film, producing arrays with very small feature sizes.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 13555-13560
    • McGall, G.1    Labadie, J.2    Brock, P.3    Wallraff, G.4    Nguyen, T.5    Hinsberg, W.6
  • 22
    • 0001418831 scopus 로고    scopus 로고
    • Elipsometric and interferometric characterisation of DNa probes immobilized on a combinatorial array
    • Gray DE, Case-Green SC, Fell TS, Dobson PJ, Southern EM: Elipsometric and interferometric characterisation of DNA probes immobilized on a combinatorial array. Langmuir 1997, 13:2833-2842. A paper demonstrating the use of nondestructive optical techniques for the assessment of quality in DNA array synthesis.
    • (1997) Langmuir , vol.13 , pp. 2833-2842
    • Gray, D.E.1    Case-Green, S.C.2    Fell, T.S.3    Dobson, P.J.4    Southern, E.M.5
  • 23
    • 0030794946 scopus 로고    scopus 로고
    • Detection of oligonucleotides hybridised to a planar surface using matrix-assisted laser-desorption mass spectroscopy
    • Narayanaswami G, Levis RJ: Detection of oligonucleotides hybridised to a planar surface using matrix-assisted laser-desorption mass spectroscopy. J Am Chem Soc 1997, 119:6888-6890.
    • (1997) J Am Chem Soc , vol.119 , pp. 6888-6890
    • Narayanaswami, G.1    Levis, R.J.2
  • 24
    • 0031569494 scopus 로고    scopus 로고
    • Multiplexed DNA sequencing and diagnostics by hybridization with enriched stable isotope labels
    • Arlinghaus HF, Kwoka MN, Jacobson KB: Multiplexed DNA sequencing and diagnostics by hybridization with enriched stable isotope labels. Anal Chem 1997, 69:1510-1517.
    • (1997) Anal Chem , vol.69 , pp. 1510-1517
    • Arlinghaus, H.F.1    Kwoka, M.N.2    Jacobson, K.B.3
  • 25
    • 0031235029 scopus 로고    scopus 로고
    • Analysis of biosensor chips for identification of nucleic acids
    • Arlinghaus HF, Kwoka MN, Jacobson KB: Analysis of biosensor chips for identification of nucleic acids. Anal Chem 1997, 69:3747-3753.
    • (1997) Anal Chem , vol.69 , pp. 3747-3753
    • Arlinghaus, H.F.1    Kwoka, M.N.2    Jacobson, K.B.3
  • 26
    • 1842366116 scopus 로고    scopus 로고
    • Toward bioelectronics: Specific DNA recognition based on an oligonucleotide-functionalized polypyrrole
    • Korri-Youssoufi H, Garnier F, Srivastava P, Godillot P, Yasser A: Toward bioelectronics: specific DNA recognition based on an oligonucleotide-functionalized polypyrrole. J Am Chem Soc 1997, 119:7388-7389.
    • (1997) J Am Chem Soc , vol.119 , pp. 7388-7389
    • Korri-Youssoufi, H.1    Garnier, F.2    Srivastava, P.3    Godillot, P.4    Yasser, A.5
  • 28
    • 0030872685 scopus 로고    scopus 로고
    • Fractionation, phosphorylation and ligation on oligonucleotide microchips to enhance sequencing by hybridisation
    • Dubiley S, Kirillov E, Lysov U, Mirzabekov A: Fractionation, phosphorylation and ligation on oligonucleotide microchips to enhance sequencing by hybridisation. Nucleic Acids Res 1997, 25:2259-2265.
    • (1997) Nucleic Acids Res , vol.25 , pp. 2259-2265
    • Dubiley, S.1    Kirillov, E.2    Lysov, U.3    Mirzabekov, A.4
  • 29
    • 0030810721 scopus 로고    scopus 로고
    • Minisequencing: A specific tool for DNA analysis and diagnostics on oligonucleotide arrays
    • Pastinen T, Kurg A, Metspalu A, Peltonen L, Syvanen A-C: Minisequencing: a specific tool for DNA analysis and diagnostics on oligonucleotide arrays. Genome Res 1997, 606-614. The application of primer extension lechnology to oligonucleotide arrays is described. Established diagnostic tests should be easily adapted to this formal. Parallelisation should improve speed of multiple testing and reduce costs.
    • (1997) Genome Res , pp. 606-614
    • Pastinen, T.1    Kurg, A.2    Metspalu, A.3    Peltonen, L.4    Syvanen, A.-C.5
  • 32
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi JL, Iyer VR, Brown PO: Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 1997, 278:680-686. This is a particularly thoughtful paper, which provides insights into the environmental and genetic control of gene expression in Saccharomyces cerevisiae. Seminal experiments on the effect of manipulating the expression of a single gene on global gene expression are described.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 35
    • 0029852580 scopus 로고    scopus 로고
    • Use of a cDNa microarray to analyse gene expression patterns in human cancer
    • DeRisi J, Penland L, Brown PO, Bittner ML, Meltzer PS, Ray M, Chen Y, Su YA, Trent JM: Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nat Genet 1996, 14:457-460. This paper examines changes in gene expression associated with suppression of the tumourigenic phenotype by the introduction of chromosome 6 into a melanoma cell line. A number of genes not previously known to be associated with tumour suppression were found.
    • (1996) Nat Genet , vol.14 , pp. 457-460
    • DeRisi, J.1    Penland, L.2    Brown, P.O.3    Bittner, M.L.4    Meltzer, P.S.5    Ray, M.6    Chen, Y.7    Su, Y.A.8    Trent, J.M.9
  • 36
    • 0031973704 scopus 로고    scopus 로고
    • Bacterial transcript imaging by hybridization of total RNA to oligonucleotide arrays
    • De Saizieu A, Certa U, Warrington J, Gray C, Keck W, Mous J: Bacterial transcript imaging by hybridization of total RNA to oligonucleotide arrays. Nat Biotechnol 1998, 16:45-48.
    • (1998) Nat Biotechnol , vol.16 , pp. 45-48
    • De Saizieu, A.1    Certa, U.2    Warrington, J.3    Gray, C.4    Keck, W.5    Mous, J.6
  • 37
    • 0029804246 scopus 로고    scopus 로고
    • Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy
    • Shoemaker DD, Lashkari DA, Morris D, Mittmann M, Davis RW: Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nat Genet 1996, 14:450-456. This important paper describes a method to tag deletion mutants of the yeast Saccharomyces cerevisiae with unique identity sequences that can be quantitatively read by hybridisation to an oligonucleotide array. The method would enable one-pot testing of survival characteristics under different environmental conditions tor all deletion strains.
    • (1996) Nat Genet , vol.14 , pp. 450-456
    • Shoemaker, D.D.1    Lashkari, D.A.2    Morris, D.3    Mittmann, M.4    Davis, R.W.5
  • 38
    • 0031301021 scopus 로고    scopus 로고
    • Discovering antisense reagents by hybridization of RNA to oligonucleotide arrays
    • Chichester: Wiley and Sons Ltd
    • Southern EM, Milner N, Mir KU: Discovering antisense reagents by hybridization of RNA to oligonucleotide arrays. In Oligonucleotides as Therapeutic Agents. Chichester: Wiley and Sons Ltd; 1997:38-46.
    • (1997) Oligonucleotides as Therapeutic Agents , pp. 38-46
    • Southern, E.M.1    Milner, N.2    Mir, K.U.3
  • 39
    • 0030902471 scopus 로고    scopus 로고
    • Selecting effective antisense reagents on combinatorial oligonucleotide arrays
    • Milner N, Mir KU, Southern EM: Selecting effective antisense reagents on combinatorial oligonucleotide arrays. Nat Biotechnol 1997, 15:537-541. This paper describes a method for selecting antisense oligonucleotides on scanning arrays and shows correlation between array-selected oligonucleotides against rabbil β-globin and antisense activity in RNAse H and in vitro translation assays. The method should improve the reliability of antisense techniques, which would be useful tools for analysing gene function and for disease therapy.
    • (1997) Nat Biotechnol , vol.15 , pp. 537-541
    • Milner, N.1    Mir, K.U.2    Southern, E.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.