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Volumn , Issue , 2000, Pages 190-201

Analysis of Yeast's ORF Upstream Regions by Parallel Processing, Microarrays, and Computational Methods

Author keywords

DNA microarrays; Gene expression; gene regulation; gene upstream regions; Markov models; motifs; yeast

Indexed keywords

ARTIFICIAL INTELLIGENCE; BINDING SITES; BIOCHIPS; MARKOV PROCESSES; YEAST;

EID: 0034565198     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (11)

References (23)
  • 3
    • 0033368269 scopus 로고    scopus 로고
    • Structural basis for triplet repreat disorders: a computational analysis
    • Baldi, P., Brunak, S., Chauvin, Y. & Pedersen, A. G. (1999). Structural basis for triplet repreat disorders: a computational analysis. Bioinformatics, 15, 918-929.
    • (1999) Bioinformatics , vol.15 , pp. 918-929
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Pedersen, A. G.4
  • 5
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • press
    • DeRisi, J. L., Iyer, V. R. & Brown, P. O. (1999). Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278, 680-686. In press.
    • (1999) Science , vol.278 , pp. 680-686
    • DeRisi, J. L.1    Iyer, V. R.2    Brown, P. O.3
  • 6
    • 0030712874 scopus 로고    scopus 로고
    • Yap, a novel family of eight bzip proteins in Saccharomyces cerevisiae with distinct biological functions
    • Fernandes, L., Rodrigues-Pousada, C. & Struhl, K. (1997). Yap, a novel family of eight bzip proteins in Saccharomyces cerevisiae with distinct biological functions. Mol. Cell Biol., 17, 6982-6993.
    • (1997) Mol. Cell Biol , vol.17 , pp. 6982-6993
    • Fernandes, L.1    Rodrigues-Pousada, C.2    Struhl, K.3
  • 9
    • 0034043604 scopus 로고    scopus 로고
    • Combinatorial motif analysis and hypothesis generation on a genomic scale
    • press
    • Hu, Y., Sandmeyer, S., Laughlin, C. M. & Kibler, D. (2000). Combinatorial motif analysis and hypothesis generation on a genomic scale. Bioinformatics. In press.
    • (2000) Bioinformatics
    • Hu, Y.1    Sandmeyer, S.2    Laughlin, C. M.3    Kibler, D.4
  • 10
    • 0034628901 scopus 로고    scopus 로고
    • Mcomputational identification of cis-regulatory elements associated with groups of functionally related genes in saccharomyces cerevisiae
    • Hughes, J. D., Estep, P. W., Tavazoie, S. & Church, G. M. (2000). Mcomputational identification of cis-regulatory elements associated with groups of functionally related genes in saccharomyces cerevisiae. J. Mol. Biol, 296, 1205-1214.
    • (2000) J. Mol. Biol , vol.296 , pp. 1205-1214
    • Hughes, J. D.1    Estep, P. W.2    Tavazoie, S.3    Church, G. M.4
  • 11
    • 0033529565 scopus 로고    scopus 로고
    • Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome
    • Kornberg, R. D. & Lorch, Y. (1999). Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell, 98, 285-294.
    • (1999) Cell , vol.98 , pp. 285-294
    • Kornberg, R. D.1    Lorch, Y.2
  • 13
    • 85165226353 scopus 로고    scopus 로고
    • Cyber-t: a set of statistical tools for the analyis of high-density array data
    • Submitted
    • Long, A. D., Mangalam, H. J. & Baldi, P. (2000). Cyber-t: a set of statistical tools for the analyis of high-density array data. Genome Research. Submitted.
    • (2000) Genome Research
    • Long, A. D.1    Mangalam, H. J.2    Baldi, P.3
  • 14
    • 0027317484 scopus 로고
    • Saccharomyces cerevisiae BUF protein binds to sequences participating in DNA replication in addition to those mediating transcriptional repression (URS1) and activation
    • Luche, R. M., Smart, W. C., Marion, T., Tillman, M., Sumrada, R. A. & Cooper, T. G. (1993). Saccharomyces cerevisiae BUF protein binds to sequences participating in DNA replication in addition to those mediating transcriptional repression (URS1) and activation. Mol. Cell. Biol, 13, 5749-5761.
    • (1993) Mol. Cell. Biol , vol.13 , pp. 5749-5761
    • Luche, R. M.1    Smart, W. C.2    Marion, T.3    Tillman, M.4    Sumrada, R. A.5    Cooper, T. G.6
  • 15
    • 0029879360 scopus 로고    scopus 로고
    • The saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress-response element (STRE
    • Martinez-Pastor, M. T., Marchler, G., Schuller, C., Marchler-Bauer, A., Ruis, H. & Estruch, F. (1996). The saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress-response element (STRE. EMBO Journal, 15, 2227-2235.
    • (1996) EMBO Journal , vol.15 , pp. 2227-2235
    • Martinez-Pastor, M. T.1    Marchler, G.2    Schuller, C.3    Marchler-Bauer, A.4    Ruis, H.5    Estruch, F.6
  • 16
    • 0024669291 scopus 로고
    • A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in saccharomyces cerevisiae
    • Sikorski, R. S. & Hieter, P. (1989). A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in saccharomyces cerevisiae. Genetics, 122, 19-27.
    • (1989) Genetics , vol.122 , pp. 19-27
    • Sikorski, R. S.1    Hieter, P.2
  • 18
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • van Helden, J., Andre, B. & Collado-Vides, J. (1998). Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol Biol, 281, 827-842.
    • (1998) J. Mol Biol , vol.281 , pp. 827-842
    • van Helden, J.1    Andre, B.2    Collado-Vides, J.3
  • 20
    • 0031453850 scopus 로고    scopus 로고
    • Genome-wide expression monitoring in saccharomyces cerevisiae
    • Wodicka, L. H. (1997). Genome-wide expression monitoring in saccharomyces cerevisiae. Nature Biotechnology, 15, 1359-1367.
    • (1997) Nature Biotechnology , vol.15 , pp. 1359-1367
    • Wodicka, L. H.1
  • 21
    • 0030947344 scopus 로고    scopus 로고
    • Molecular evidence for an ancient duplication of the entire yeast genome
    • Wolfe, K. H. & Shields, D. (1997). Molecular evidence for an ancient duplication of the entire yeast genome. Nature, 387, 708-713.
    • (1997) Nature , vol.387 , pp. 708-713
    • Wolfe, K. H.1    Shields, D.2
  • 22
    • 0028168801 scopus 로고
    • GSH1 which encodes gammaglutamylcysteine synthetase is a target gene for YAP-1 transcriptional regulation
    • Wu, A. L. & Moye-Rowley, W. S. (1994). GSH1 which encodes gammaglutamylcysteine synthetase is a target gene for YAP-1 transcriptional regulation. Mol. Cell. Biol, 14, 5832-5839.
    • (1994) Mol. Cell. Biol , vol.14 , pp. 5832-5839
    • Wu, A. L.1    Moye-Rowley, W. S.2
  • 23
    • 0032863227 scopus 로고    scopus 로고
    • Large-scale gene expression data analysis: a new challenge to computational biologists
    • Zhang, M. Q. (1999). Large-scale gene expression data analysis: a new challenge to computational biologists. Genome Research, 9, 681-688.
    • (1999) Genome Research , vol.9 , pp. 681-688
    • Zhang, M. Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.