Microarrays for microbiologists

Microbiology

Volumn 147, Issue 6, 2001, Pages 1403-1414

  Lucchini, S ^a   Thompson, A ^a   Hinton, J C D ^a  

^a INSTITUTE OF FOOD RESEARCH   (United Kingdom)

Author keywords

DNA microarray; Gene expression profiling; Microbial genomotyping

Indexed keywords

COMPLEMENTARY DNA; DNA; RNA;

BACTERIAL GENE; BACTERIAL INFECTION; CONTROLLED STUDY; DATA ANALYSIS; DNA MICROARRAY; DRUG TARGETING; EVOLUTION; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE TECHNOLOGY; GENOTYPE; IN VIVO STUDY; NONHUMAN; PRIORITY JOURNAL; REGULON; RELIABILITY; RESEARCH; REVIEW;

BACTERIA (MICROORGANISMS);

EID: 0034969843     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-147-6-1403     Document Type: Review

References (107)

1. Systematic management and analysis of yeast gene expression data
2. Method for detection of specific RNAs in agarose gels by transfer to diazobenzyloxymethyl-paper and hybridization with DNA probes
3. Detection of specific RNAs or specific fragments of DNA by fractionation in gels and transfer to diazobenzyloxymethyl paper
4. Global gene expression profiling in Escherichia coli K12. The effects of integration host factors
5. Genome-wide expression patterns in Saccharomyces cerevisiae: Comparison of drug treatments and genetic alterations affecting biosynthesis of ergosterol
6. Differential expression of over 60 chromosomal genes in Escherichia coli by constitutive expression of MarA
7. Comparative genomics of BCG vaccines by whole-genome DNA microarray
8. The transcriptional responses of respiratory epithelial cells to Bordetella pertussis reveal host defensive and pathogen counter-defensive strategies
9. Genomewide studies of histone deacetylase function in yeast
10. Functional genomics: Learning to think about gene expression data
11. Metal-ion tolerance in Escherichia coli: Analysis of transcriptional profiles by gene-array technology
12. mRNA degradation - A tale of poly(A) and multiprotein machines
13. Preparation and hybridization analysis of DNA/RNA from E. coli on microfabricated bioelectronic chips
14. A genome-wide transcriptional analysis of the mitotic cell cycle
15. The transcriptional program of sporulation in budding yeast
16. Global regulation of gene expression in Escherichia coli
17. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
18. Monitoring cellular responses to Listeria monocytogenes with oligonucleotide arrays
19. The use of guanidinium chloride in the isolation of nucleic acids
20. Using DNA microarrays to study host-microbe interactions
21. Use of cDNA microarray to analyse gene expression patterns in human cancer
22. Exploring the metabolic and genetic control of gene expression on a genomic scale
23. Genome microarray analysis of transcriptional activation in multidrug resistance yeast mutants
24. Chlamydial infection of polarized HeLa cells induces PMN chemotaxis but the cytokine profile varies between disseminating and non-disseminating strains
25. Large-scale identification of secreted and membrane-associated gene products using DNA microarrays
26. Analysis of gene expression in single live neurons
27. Analysis by high density cDNA arrays of altered gene expression in human intestinal epithelial cells in response to infection with the invasive enteric bacteria Salmonella
28. Cluster analysis and display of genome-wide expression patterns
29. Universal DNA array detection of small insertions and deletions in BRCA1 and BRCA2
30. Systematic changes in gene expression patterns following adaptive evolution in yeast
31. Ploidy regulation of gene expression
32. Genomic profiling of drug sensitivities via induced haploinsufficiency
33. Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays
34. Exploiting chemical libraries, structure, and genomics in the search for kinase inhibitors
35. How Salmonella became a pathogen
36. Identification of the copper regulon in Saccharomyces cerevisiae by DNA microarrays
37. The phylogeny of proteobacteria: Relationships to other eubacterial phyla and eukaryotes
38. Measurement of bacterial gene expression in vivo
39. RNA polymerase II subunit Rpb9 regulates transcription elongation in vivo
40. The Escherichia coli genome sequence: The end of an era or the start of the FUN?
41. Dissecting the regulatory circuitry of a eukaryotic genome
42. Molecular analysis of commensal host-microbial relationships in the intestine
43. Functional discovery via a compendium of expression profiles
44. Widespread aneuploidy revealed by DNA microarray expression profiling
45. Interaction of Pseudomonas aeruginosa with epithelial cells: Identification of differentially regulated genes by expression microarray analysis of human cDNAs
46. Global response of Saccharomyces cerevisiae to an alkylating agent
47. Global expression profiling of yeast treated with an inhibitor of amino acid biosynthesis, sulfometuron methyl
48. On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: The need for machine learning
49. DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli
50. Analysis of topoisomerase function in bacterial replication fork movement: Use of DNA microarrays
51. Global and specific translational regulation in the genomic response of Saccharomyces cerevisiae to a rapid transfer from a fermentable to a nonfermentable carbon source
52. Yeast microarrays for genome wide parallel genetic and gene expression analysis
53. Global analysis of the genetic network controlling a bacterial cell cycle
54. Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome
55. Overview of DNA chip technology
56. Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
57. Expression monitoring by hybridization to high-density oligonucleotide arrays
58. Understanding the growth phenotype of the yeast gcr1 mutant in terms of global genomic expression patterns
59. Gene expression profiles of laser-captured adjacent neuronal subtypes
60. Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast
61. How the host 'sees' pathogens: Global gene expression responses to infection
62. Revised methods for the Salmonella mutagenicity test
63. Drug target validation and identification of secondary drug target effects using DNA microarrays
64. Status of genome projects for nonpathogenic bacteria and archaea
65. Lateral gene transfer and the nature of bacterial innovation
66. Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli
67. Microbial genomics. Culling genes early yields rich harvest
68. The transcriptional response of yeast to saline stress
69. The core meiotic transcriptome in budding yeasts
70. A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
71. Genome-wide location and function of DNA binding proteins
72. Genome-wide expression profiling in Escherichia coli K-12
73. Genetic architecture of thermal adaptation in Escherichia coli
74. Global analysis of transcription kinetics during competence development in Streptococcus pneumoniae using high density DNA arrays
75. Harnessing the power of the genome in the search for new antibiotics
76. Salmonella typhimurium infection and lipopolysaccharide stimulation induce similar changes in macrophage gene expression
77. Large-scale analysis of the yeast genome by transposon tagging and gene disruption
78. Microarray-based identification of a novel Streptococcus pneumoniae regulon controlled by an autoinduced peptide
79. A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains
80. Polyadenylation of mRNA in bacteria
81. Quantitative monitoring of gene expression patterns with a complementary DNA microarray
82. A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization
83. Detection of specific sequences among DNA fragments separated by gel electrophoresis
84. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
85. The Berkeley Drosophila Genome Project gene disruption project: Single P-element insertions mutating 25% of vital Drosophila genes
86. Whole-genome expression analysis of snf/swi mutants of Saccharomyces cerevisiae
87. Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis
88. Direct evidence for mRNA binding and post-transcriptional regulation by Escherichia coli aconitases
89. Functional genomics: Expression analysis of Escherichia coli growing on minimal and rich media
90. It's easy to build your own microarrayer!
91. Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays
92. Characterization of the yeast transcriptome
93. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
94. High-fidelity mRNA amplification for gene profiling
95. Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium
96. High-density microarray-mediated gene expression profiling of Escherichia coli
97. Exploring drug-induced alterations in gene expression in Mycobacterium tuberculosis by microarray hybridization
98. Direct allelic variation scanning of the yeast genome
99. Whole genome genetic-typing in yeast using high-density oligonucleotide arrays
100. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
101. Genome-wide expression monitoring in Saccharomyces cerevisiae
102. Candidate regulatory sequence elements for cell cycle-dependent transcription in Saccharomyces cerevisiae
103. Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast
104. Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions
105. Desferrioxamine-mediated iron uptake in Saccharomyces cerevisiae. Evidence for two pathways of iron uptake
106. Promoter analysis of co-regulated genes in the yeast genome
107. Knowledge discovery in gene-expression-microarray data: Mining the information output of the genome