-
1
-
-
0032413411
-
Predicting gene regulatory elements in silico on a genomic scale
-
Brazma, A., I. Jonassen, J. Vilo, and E. Ukkonen. 1998. Predicting gene regulatory elements in silico on a genomic scale. Genome Res. 8: 1202-1215.
-
(1998)
Genome Res.
, vol.8
, pp. 1202-1215
-
-
Brazma, A.1
Jonassen, I.2
Vilo, J.3
Ukkonen, E.4
-
2
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
Cho, R.J., M.J. Campbell, E.A. Winzeler, L. Steinmetz, A. Conway, L. Wodicka, T.G. Wolfsberg, A.E. Gabrielian, D. Landsman, D.J. Lockhart, and R.W. Davis. 1998. A genome-wide transcriptional analysis of the mitotic cell cycle. Mol. Cell 2: 65-73.
-
(1998)
Mol. Cell
, vol.2
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.G.7
Gabrielian, A.E.8
Landsman, D.9
Lockhart, D.J.10
Davis, R.W.11
-
3
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
Chu, S., J. DeRisi, M. Eisen, J. Mulholland, D. Botstein, P.O. Brown, and I. Herskowitz. 1998. The transcriptional program of sporulation in budding yeast. Science 282: 699-705.
-
(1998)
Science
, vol.282
, pp. 699-705
-
-
Chu, S.1
DeRisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
Herskowitz, I.7
-
4
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J.L., V.R. Iyer, and P.O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
Derisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
5
-
-
0031589009
-
Prediction of gene expression specificity by promoter sequence patterns
-
Fujibuchi, W. and M. Kanehisa. 1997. Prediction of gene expression specificity by promoter sequence patterns. DNA Res. 4: 81-90.
-
(1997)
DNA Res.
, vol.4
, pp. 81-90
-
-
Fujibuchi, W.1
Kanehisa, M.2
-
6
-
-
0028988483
-
A novel cis-acting element required for lipopolysaccharide-induced transcription of the murine interleukin-1 beta gene
-
Godambe, S.A., D.D. Chaplin, T. Takova, L.M. Read, and C.J. Bellone. 1995. A novel cis-acting element required for lipopolysaccharide-induced transcription of the murine interleukin-1 beta gene. Mol. Cell. Biol. 15: 112-119.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 112-119
-
-
Godambe, S.A.1
Chaplin, D.D.2
Takova, T.3
Read, L.M.4
Bellone, C.J.5
-
7
-
-
0347890376
-
Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences
-
Hahn, S., S. Buratowski, P.A. Sharp, and L. Guarente. 1989. Yeast TATA-binding protein TFIID binds to TATA elements with both consensus and nonconsensus DNA sequences. Proc. Natl. Acatl. Sci. 86: 5718-5722.
-
(1989)
Proc. Natl. Acatl. Sci.
, vol.86
, pp. 5718-5722
-
-
Hahn, S.1
Buratowski, S.2
Sharp, P.A.3
Guarente, L.4
-
8
-
-
0032947097
-
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms
-
Heinemeyer, T., X. Chen, H. Karas, A.E. Kel, O.V. Kel, I. Liebich, T. Meinhardt, I. Reuter, F. Schacherer, and E. Wingender. 1999. Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms. Nucleic Acids Res. 27: 318-322.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 318-322
-
-
Heinemeyer, T.1
Chen, X.2
Karas, H.3
Kel, A.E.4
Kel, O.V.5
Liebich, I.6
Meinhardt, T.7
Reuter, I.8
Schacherer, F.9
Wingender, E.10
-
9
-
-
0032894060
-
The yeast proteome database (YPD): A model for the organization and presentation of genome-wide functional data
-
Hodges, P.E., A.H.Z. McKee, B.P. Davis, W.E. Payne, and J.I. Garrels. 1999. The yeast proteome database (YPD): A model for the organization and presentation of genome-wide functional data. Nucleic Acids Res. 27: 69-73.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 69-73
-
-
Hodges, P.E.1
McKee, A.H.Z.2
Davis, B.P.3
Payne, W.E.4
Garrels, J.I.5
-
10
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
Holstege, F.C., E.G. Jennings, J.J. Wyrick, T.I. Lee, C.J. Hengartner, M.R. Green, T.R. Golub, E.S. Lander, and R.A. Young. 1998. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717-728.
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
Green, M.R.6
Golub, T.R.7
Lander, E.S.8
Young, R.A.9
-
11
-
-
0030461607
-
The prediction of vertebrate promoter regions using differential hexamer frequency analysis
-
Hutchinson, G.B. 1996. The prediction of vertebrate promoter regions using differential hexamer frequency analysis. Coinput. Appl. Biosci. 12: 391-398.
-
(1996)
Coinput. Appl. Biosci.
, vol.12
, pp. 391-398
-
-
Hutchinson, G.B.1
-
13
-
-
0028292454
-
Cell cycle regulated transcription in yeast
-
Koch, C. and K. Nasmyth. 1994. Cell cycle regulated transcription in yeast. Curr. Opin. Cell. Biol. 6: 451-459.
-
(1994)
Curr. Opin. Cell. Biol.
, vol.6
, pp. 451-459
-
-
Koch, C.1
Nasmyth, K.2
-
14
-
-
0030466036
-
The transcriptional apparatus required for mRNA encoding genes in the yeast Saccharomyces cerevisiae emerges from a jigsaw puzzle of transcription factors
-
Kunzler, M., C. Springer, and G.H. Braus. 1996. The transcriptional apparatus required for mRNA encoding genes in the yeast Saccharomyces cerevisiae emerges from a jigsaw puzzle of transcription factors. FEMS Microbiol. Rev. 19: 117-136.
-
(1996)
FEMS Microbiol. Rev.
, vol.19
, pp. 117-136
-
-
Kunzler, M.1
Springer, C.2
Braus, G.H.3
-
15
-
-
0000163603
-
Cell cycle control in Saccharomyces cerevisiae
-
(ed. J.R. Pringle, J.R. Broach, and E.W. Jones), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Lew, D.J., T. Weinert, and J.R. Pringle. 1997. Cell cycle control in Saccharomyces cerevisiae. In The molecular and cellular biology of the yeast Saccharomyces (ed. J.R. Pringle, J.R. Broach, and E.W. Jones), Vol. 3, pp. 607-695. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1997)
The Molecular and Cellular Biology of the Yeast Saccharomyces
, vol.3
, pp. 607-695
-
-
Lew, D.J.1
Weinert, T.2
Pringle, J.R.3
-
16
-
-
0027482194
-
MCB elements and the regulation of DNA replication genes in yeast
-
McIntosh, E.M. 1993. MCB elements and the regulation of DNA replication genes in yeast. Curr. Genet. 24: 185-192.
-
(1993)
Curr. Genet.
, vol.24
, pp. 185-192
-
-
McIntosh, E.M.1
-
17
-
-
0032893083
-
MIPS: A database for genomes and protein sequences
-
Mewes, H.W., K. Heumann, A. Kaps, K. Mayer, F. Pfeiffer, S. Stocker, and D. Frishman. 1999. MIPS: A database for genomes and protein sequences. Nucleic Acids Res. 27: 44-48.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 44-48
-
-
Mewes, H.W.1
Heumann, K.2
Kaps, A.3
Mayer, K.4
Pfeiffer, F.5
Stocker, S.6
Frishman, D.7
-
18
-
-
0031825456
-
A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements
-
Moskvina, E., C. Schuller, C.T. Maurer, W.H. Mager, and H. Ruis. 1998. A search in the genome of Saccharomyces cerevisiae for genes regulated via stress response elements. Yeast 14: 1041-1050.
-
(1998)
Yeast
, vol.14
, pp. 1041-1050
-
-
Moskvina, E.1
Schuller, C.2
Maurer, C.T.3
Mager, W.H.4
Ruis, H.5
-
19
-
-
0030606099
-
Transcriptional regulation of the human chromogranin A gene by its 5′ distal regulatory element: Novel effects of orientation, structure, flanking sequences, and position on expression
-
Nolan, E.M., T.C. Cheung, D.W. Burton, and L.J. Deftos. 1996. Transcriptional regulation of the human chromogranin A gene by its 5′ distal regulatory element: Novel effects of orientation, structure, flanking sequences, and position on expression. Mol. Cell. Endocrinol. 124: 51-62.
-
(1996)
Mol. Cell. Endocrinol.
, vol.124
, pp. 51-62
-
-
Nolan, E.M.1
Cheung, T.C.2
Burton, D.W.3
Deftos, L.J.4
-
20
-
-
0030909851
-
Cell cycle-dependent transcription of CLN1 involves swi4 binding to MCB- Like elements
-
Partridge, J.F., G.E. Mikesell, and L.L. Breeden. 1997. Cell cycle-dependent transcription of CLN1 involves swi4 binding to MCB- like elements. J. Biol. Chem. 272: 9071-9077.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 9071-9077
-
-
Partridge, J.F.1
Mikesell, G.E.2
Breeden, L.L.3
-
21
-
-
0031807017
-
Xenopus TFIIIA gene transcription is dependent on cis-element positioning and chromatin structure
-
Pfaff, S.L. and W.L. Taylor. 1998. Xenopus TFIIIA gene transcription is dependent on cis-element positioning and chromatin structure. Mol. Cell. Biol. 18: 3811-3818.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 3811-3818
-
-
Pfaff, S.L.1
Taylor, W.L.2
-
22
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth, F.P., J.D. Hughes, P.W. Estep, and G.M. Church. 1998. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol. 16: 939-945.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
23
-
-
0031931222
-
Computer analysis of the entire budding yeast genome for putative targets of the GCN4 transcription factor
-
Schuldiner, O., C. Yanover, and N. Benvenisty. 1998. Computer analysis of the entire budding yeast genome for putative targets of the GCN4 transcription factor. Curr. Genet. 33: 16-20.
-
(1998)
Curr. Genet.
, vol.33
, pp. 16-20
-
-
Schuldiner, O.1
Yanover, C.2
Benvenisty, N.3
-
24
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, P.T., G. Sherlock, M.Q. Zhang, V.R. Iyer, K. Anders, M.B. Eisen, P.O. Brown, D. Botstein, and B. Futcher. 1998. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell. 9: 3273-3297.
-
(1998)
Mol. Biol. Cell.
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
25
-
-
0029559463
-
Yeast transcriptional regulatory mechanisms
-
Struhl, K. 1995. Yeast transcriptional regulatory mechanisms. Annu. Rev. Genet. 29: 651-674.
-
(1995)
Annu. Rev. Genet.
, vol.29
, pp. 651-674
-
-
Struhl, K.1
-
26
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo, P., D. Slonim, J. Mesirov, Q. Zhu, S. Kitareewan, E. Dmitrovsky, E.S. Lander, and T.R. Golub. 1999. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc. Natl. Acad. Sci. 96: 2907-2912.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
Lander, E.S.7
Golub, T.R.8
-
27
-
-
0032500690
-
Transcriptional factor mutations reveal regulatory complexities of heat shock and newly identified stress genes in Saccharomyces cerevisiae
-
Treger, J.M., A.P. Schmitt, J.R. Simon, and K. McEntee. 1998. Transcriptional factor mutations reveal regulatory complexities of heat shock and newly identified stress genes in Saccharomyces cerevisiae. J. Biol. Chem. 273: 26875-26879.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 26875-26879
-
-
Treger, J.M.1
Schmitt, A.P.2
Simon, J.R.3
McEntee, K.4
-
28
-
-
0032483307
-
Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
-
van Helden, J., B. Andre, and J. Collado-Vides. 1998. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. J. Mol. Biol. 281: 827-842.
-
(1998)
J. Mol. Biol.
, vol.281
, pp. 827-842
-
-
Helden, J.1
Andre, B.2
Collado-Vides, J.3
-
29
-
-
0031453850
-
Genome-wide expression monitoring in Saccharomyces cerevisiae
-
Wodicka, L., H. Dong, M. Mittmann, M.H. Ho, and D.J. Lockhart. 1997. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat. Biotechnol. 15: 1359-1367.
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 1359-1367
-
-
Wodicka, L.1
Dong, H.2
Mittmann, M.3
Ho, M.H.4
Lockhart, D.J.5
|