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Volumn 8, Issue 5, 1998, Pages 435-448

Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; OLIGONUCLEOTIDE; RIFAMPICIN;

EID: 0031803670     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.8.5.435     Document Type: Article
Times cited : (246)

References (48)
  • 2
    • 0026063318 scopus 로고
    • Identification of Mycobacteria by high-performance liquid chromatography
    • Butler, W., K. Jost, and J. Kilburn. 1991. Identification of Mycobacteria by high-performance liquid chromatography. J. Clin. Microbiol. 29: 2468-2472.
    • (1991) J. Clin. Microbiol. , vol.29 , pp. 2468-2472
    • Butler, W.1    Jost, K.2    Kilburn, J.3
  • 5
    • 0027489149 scopus 로고
    • Molecular basis of Streptomyocin resistance in Mycobacteriurn tuberculosis: Alterations of the ribosomal protein S12 gene and point mutations within a functional 16S ribosomal RNA pseudoknot
    • Fin, K.M., P. Kirschner, A. Meier, A. Wrede, and E.C. Bottger. 1993. Molecular basis of Streptomyocin resistance in Mycobacteriurn tuberculosis: Alterations of the ribosomal protein S12 gene and point mutations within a functional 16S ribosomal RNA pseudoknot. Mol. Microbiol. 9: 1239-1246.
    • (1993) Mol. Microbiol. , vol.9 , pp. 1239-1246
    • Fin, K.M.1    Kirschner, P.2    Meier, A.3    Wrede, A.4    Bottger, E.C.5
  • 6
    • 0026585263 scopus 로고
    • How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identification
    • Fox, G.E., J.D. Wisotzkey, and P. Jurtshuk. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identification. Int. J. Syst. Bacteriol. 42: 166-170.
    • (1992) Int. J. Syst. Bacteriol. , vol.42 , pp. 166-170
    • Fox, G.E.1    Wisotzkey, J.D.2    Jurtshuk, P.3
  • 7
    • 0029829670 scopus 로고    scopus 로고
    • Detection of heterozygous mutations in BRCA 1 using high density oligonucleotide arrays and two-colour fluorescence analysis
    • Hacia, J.G., L.C. Brody, M.S. Chee, S.P.A. Fodor, and F.S. Collins. 1996. Detection of heterozygous mutations in BRCA 1 using high density oligonucleotide arrays and two-colour fluorescence analysis. Nature Genet. 14: 441-447.
    • (1996) Nature Genet. , vol.14 , pp. 441-447
    • Hacia, J.G.1    Brody, L.C.2    Chee, M.S.3    Fodor, S.P.A.4    Collins, F.S.5
  • 10
    • 0028960179 scopus 로고
    • Missense mutations in catalase-peroxidase gene, katG are associated with isoniazid-resistance in Mycobacterium tuberculosis
    • Heym, B., P.M. Alzari, N. Honoré, and S.T. Cole. 1995. Missense mutations in catalase-peroxidase gene, katG are associated with isoniazid-resistance in Mycobacterium tuberculosis. Mol. Microbiol. 15: 235-245.
    • (1995) Mol. Microbiol. , vol.15 , pp. 235-245
    • Heym, B.1    Alzari, P.M.2    Honoré, N.3    Cole, S.T.4
  • 11
    • 0027483138 scopus 로고
    • Molecular basis of rifampin resistance in Mycobacterium leprae
    • Honoré, N. and S.T. Cole. 1993. Molecular basis of rifampin resistance in Mycobacterium leprae. Antimicrob. Agents Chemother. 37: 414-418.
    • (1993) Antimicrob. Agents Chemother. , vol.37 , pp. 414-418
    • Honoré, N.1    Cole, S.T.2
  • 12
    • 0027953831 scopus 로고
    • Detection of a genetic locus encoding resistance to rifampin in Mycobacterial cultures and in clinical specimens
    • Hunt, J.M., G.D. Roberts, L. Stockman, T.A. Felmlee, and D.H. Persing. 1994. Detection of a genetic locus encoding resistance to rifampin in Mycobacterial cultures and in clinical specimens. Diagn. Microbiol. Infect. Dis. 18: 219-227.
    • (1994) Diagn. Microbiol. Infect. Dis. , vol.18 , pp. 219-227
    • Hunt, J.M.1    Roberts, G.D.2    Stockman, L.3    Felmlee, T.A.4    Persing, D.H.5
  • 13
    • 0002769662 scopus 로고
    • Antimicrobial agents and susceptibility tests: Mycobacteria
    • (ed. P.R. Murray, E.J. Baron, M.A. Pfaller, F.C. Tenover and R.H. Yolken), 6th edition, American Society for Microbiology, Washington, D.C.
    • Inderlied, C.B. and M. Salfinger. 1995. Antimicrobial agents and susceptibility tests: mycobacteria. In Manual of clinical microbiology (ed. P.R. Murray, E.J. Baron, M.A. Pfaller, F.C. Tenover and R.H. Yolken), 6th edition, pp. 1385-1404. American Society for Microbiology, Washington, D.C.
    • (1995) Manual of Clinical Microbiology , pp. 1385-1404
    • Inderlied, C.B.1    Salfinger, M.2
  • 15
    • 0023749808 scopus 로고
    • Mapping and sequencing of mutations in Escherichia coli rpoB gene that lead to rifampicin resistance
    • Jin, D.J. and C.A. Gross. 1988. Mapping and sequencing of mutations in Escherichia coli rpoB gene that lead to rifampicin resistance. J. Mol. Biol. 202: 45-58.
    • (1988) J. Mol. Biol. , vol.202 , pp. 45-58
    • Jin, D.J.1    Gross, C.A.2
  • 16
    • 0014129195 scopus 로고
    • Standard tree representation: Hierarchical clustering schemes
    • Johnson, S.C. 1967. Standard tree representation: Hierarchical clustering schemes. Psychometrica 32: 241-254.
    • (1967) Psychometrica , vol.32 , pp. 241-254
    • Johnson, S.C.1
  • 17
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (ed. H.N. Munro), Academic Press, San Diego, CA
    • Jukes, T.H. and C.R. Cantor. 1969. Evolution of protein molecules. In Mammalian protein metabolism (ed. H.N. Munro), vol. III, pp. 21-132, Academic Press, San Diego, CA.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 18
    • 0028272871 scopus 로고
    • Characterization by automated DNA sequencing of mutation in the gene (rpoB) encoding the RNA polymerase β subunit in rifampin-resistant Mycobacterium tuberculosis strains from New York City and Texas
    • Kapur, V., L.L. Li, S. Iordanescu, M.R. Hamrick, A. Wagner, B.N. Keeiswriteh, and J.M. Musser. 1994. Characterization by automated DNA sequencing of mutation in the gene (rpoB) encoding the RNA polymerase β subunit in rifampin-resistant Mycobacterium tuberculosis strains from New York City and Texas. J. Clin. Microbiol. 32: 1095-1098.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 1095-1098
    • Kapur, V.1    Li, L.L.2    Iordanescu, S.3    Hamrick, M.R.4    Wagner, A.5    Keeiswriteh, B.N.6    Musser, J.M.7
  • 19
    • 0027451410 scopus 로고
    • Genotypic identification of Mycobacterial by nucleic acid sequence determination: Report of a 2-year experience in a clinical laboratory
    • Kirschner, P., B. Springer, U. Vogel, A. Meier, A. Wrede, M. Kiekenbeck, F.-C. Bange, and E.C. Bottger. 1993. Genotypic identification of Mycobacterial by nucleic acid sequence determination: Report of a 2-year experience in a clinical laboratory. J. Clin. Microbiol. 31: 2882-2889.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 2882-2889
    • Kirschner, P.1    Springer, B.2    Vogel, U.3    Meier, A.4    Wrede, A.5    Kiekenbeck, M.6    Bange, F.-C.7    Bottger, E.C.8
  • 21
    • 85038604054 scopus 로고    scopus 로고
    • Analysis of mycolic acid cleavage product and cellular fatty acids of Mycobacterium species by capillary gas chromatography
    • Lambert, M., A.C.W. Moss, V.A. Silcox, and R. Gord. 1996. Analysis of mycolic acid cleavage product and cellular fatty acids of Mycobacterium species by capillary gas chromatography. J. Clin. Microbiol. 29: 1276-1278.
    • (1996) J. Clin. Microbiol. , vol.29 , pp. 1276-1278
    • Lambert, M.1    Moss, A.C.W.2    Silcox, V.A.3    Gord, R.4
  • 22
    • 0027262433 scopus 로고
    • Mycobacterium Smegmatis RNA polymerase: DNA supercoiling, action of rifampin and mechanism of rifampin resistance
    • Levin, M.E. and G.F. Hatfull. 1993. Mycobacterium Smegmatis RNA polymerase: DNA supercoiling, action of rifampin and mechanism of rifampin resistance. Mol. Microbiol. 8: 277-285.
    • (1993) Mol. Microbiol. , vol.8 , pp. 277-285
    • Levin, M.E.1    Hatfull, G.F.2
  • 25
    • 0019099305 scopus 로고
    • Lipid composition in the classification and identification of acid fast bacteria
    • (ed. B.R. Bloom), American Society of Microbiology Press, Washington, D.C.
    • Minnikin, D.E. and M. Goodfellow. 1980. Lipid composition in the classification and identification of acid fast bacteria. In Microbiologica classification and identification (ed. B.R. Bloom), pp. 189-239. American Society of Microbiology Press, Washington, D.C.
    • (1980) Microbiologica Classification and Identification , pp. 189-239
    • Minnikin, D.E.1    Goodfellow, M.2
  • 26
    • 0030766237 scopus 로고    scopus 로고
    • Trends in drug-resistant tuberculosis in the United States, 1993-1996
    • Moore, M., I.M. Onorato, E. McGray, and A.G. Castro. 1997. Trends in drug-resistant tuberculosis in the United States, 1993-1996. J. Am. Med. Assoc. 278: 833-837.
    • (1997) J. Am. Med. Assoc. , vol.278 , pp. 833-837
    • Moore, M.1    Onorato, I.M.2    McGray, E.3    Castro, A.G.4
  • 27
    • 0028839319 scopus 로고
    • Antimicrobial agent resistance in Mycobacteria: Molecular genetic insights
    • Musser, J.M. 1995. Antimicrobial agent resistance in Mycobacteria: Molecular genetic insights. Clin. Microbiol. Rev. 8: 496-514.
    • (1995) Clin. Microbiol. Rev. , vol.8 , pp. 496-514
    • Musser, J.M.1
  • 28
    • 0030042509 scopus 로고    scopus 로고
    • Characterization of the catalase-peroxidase gene (katG) and INHA locus of isoniazid-resistant and -susceptable strains of Mycobacterium tuberculosis by automated DNA sequencing: Restricted array of mutations associated with drug resistance
    • Musser, J.M., V. Kapur, D.L. Williams, B.N. Kreiswirth, D. vanSoolingen, and J.D. vanEmbden. 1996. Characterization of the catalase-peroxidase gene (katG) and INHA locus of isoniazid-resistant and -susceptable strains of Mycobacterium tuberculosis by automated DNA sequencing: Restricted array of mutations associated with drug resistance. J. Infect. Dis. 173: 196-202.
    • (1996) J. Infect. Dis. , vol.173 , pp. 196-202
    • Musser, J.M.1    Kapur, V.2    Williams, D.L.3    Kreiswirth, B.N.4    Vansoolingen, D.5    Vanembden, J.D.6
  • 29
    • 0002836279 scopus 로고
    • Mycobaterium
    • (ed. P.R. Murray, E.J. Baron, M.A. Pfaller, F.C. Tenover and R.H. Yolken), 6th ed., American Society for Microbiology, Washington, D.C.
    • Nolte, F.S. and B. Metchock. 1995. Mycobaterium p. 400-437. In Manual of clinical microbiology (ed. P.R. Murray, E.J. Baron, M.A. Pfaller, F.C. Tenover and R.H. Yolken), 6th ed., pp. 400-437. American Society for Microbiology, Washington, D.C.
    • (1995) Manual of Clinical Microbiology , pp. 400-437
    • Nolte, F.S.1    Metchock, B.2
  • 32
    • 0002314682 scopus 로고
    • Mycobacterium
    • ed. A. Balows, W.J. Hausler, Jr., K.L. Hermann, H.D. Isenberg, and H.J. Shadomy. American Society of Microbiology, Washington, D.C.
    • Roberts, G.D., E.W. Koneman, and Y.K. Kim. 1991. Mycobacterium In Manual of clinical microbiology, 5th ed., pp. 304-339. (ed. A. Balows, W.J. Hausler, Jr., K.L. Hermann, H.D. Isenberg, and H.J. Shadomy. American Society of Microbiology, Washington, D.C.
    • (1991) Manual of Clinical Microbiology, 5th Ed. , pp. 304-339
    • Roberts, G.D.1    Koneman, E.W.2    Kim, Y.K.3
  • 34
    • 2642654051 scopus 로고
    • SAS Institute, Cary, N.C.
    • SAS Institute, Inc. 1990. Proc Cluster SAS/SAT user's guide, Vol. 1. SAS Institute, Cary, N.C.
    • (1990) Proc Cluster SAS/SAT User's Guide , vol.1
  • 35
    • 0029954860 scopus 로고    scopus 로고
    • Mutations in pncA, a gene encoding pyrazinamidase/nicotinamidase, cause resistance to the antituberculosis drug pyrazinamide in tubercle bacillus
    • Scorpio, A. and Y. Zhang. 1996. Mutations in pncA, a gene encoding pyrazinamidase/nicotinamidase, cause resistance to the antituberculosis drug pyrazinamide in tubercle bacillus. Nature Med. 2: 662-667.
    • (1996) Nature Med. , vol.2 , pp. 662-667
    • Scorpio, A.1    Zhang, Y.2
  • 37
    • 0029804246 scopus 로고    scopus 로고
    • Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy
    • Shoemaker, D.D., D.A. Lashari, D. Morris, M. Mittmann, and R.W. Davis. 1996. Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy. Nature Genet. 14: 450-456.
    • (1996) Nature Genet. , vol.14 , pp. 450-456
    • Shoemaker, D.D.1    Lashari, D.A.2    Morris, D.3    Mittmann, M.4    Davis, R.W.5
  • 38
    • 0000718683 scopus 로고
    • Molecular epidemiology of tuberculosis
    • (ed. B.R. Bloom), American Society of Microbiology Press, Washington, D.C.
    • Small, P.M and J.D.A. vanEmbden. 1994. Molecular epidemiology of tuberculosis. In Pathogenesis, protection and control. (ed. B.R. Bloom), pp. 569-582. American Society of Microbiology Press, Washington, D.C.
    • (1994) Pathogenesis, Protection and Control , pp. 569-582
    • Small, P.M.1    VanEmbden, J.D.A.2
  • 39
    • 0029978270 scopus 로고    scopus 로고
    • Characterization of rpsL and rrs mutations in Streptomyocin-resistant Mycobacterium tuberculosis isolates from diverse geographic localities
    • Sreevatsan, S., X. Pan, K.E. Stockbauer, D.L. Williams, B.N. Kreiswirth, and J.M. Musser. 1996. Characterization of rpsL and rrs mutations in Streptomyocin-resistant Mycobacterium tuberculosis isolates from diverse geographic localities. Antimicrob. Agents Chemother. 40: 1024-1026.
    • (1996) Antimicrob. Agents Chemother. , vol.40 , pp. 1024-1026
    • Sreevatsan, S.1    Pan, X.2    Stockbauer, K.E.3    Williams, D.L.4    Kreiswirth, B.N.5    Musser, J.M.6
  • 40
    • 0031029455 scopus 로고    scopus 로고
    • Mutations associated with pyrazinamide resistance in pncA of Mycobacterium tuberculosis complex organisms
    • Sreevatsan, S., X. Pan, Y. Zhang, B.N. Kreiswirth, and J.M. Musser. 1997. Mutations associated with pyrazinamide resistance in pncA of Mycobacterium tuberculosis complex organisms. Antimicrob. Agents Chemother. 41: 636-640.
    • (1997) Antimicrob. Agents Chemother. , vol.41 , pp. 636-640
    • Sreevatsan, S.1    Pan, X.2    Zhang, Y.3    Kreiswirth, B.N.4    Musser, J.M.5
  • 43
    • 0002331280 scopus 로고
    • The future of data analysis
    • Tukey, J.W. 1962. The future of data analysis. Ann. Math. Stat. 33: 22.
    • (1962) Ann. Math. Stat. , vol.33 , pp. 22
    • Tukey, J.W.1
  • 46
    • 84944178665 scopus 로고
    • Hierarchical grouping to optimize an objective function
    • Ward, J.H. 1963. Hierarchical grouping to optimize an objective function. J. Am. Stati. Assoc. 58: 236-244.
    • (1963) J. Am. Stati. Assoc. , vol.58 , pp. 236-244
    • Ward, J.H.1


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