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Volumn 16, Issue 2, 2000, Pages 278-286

Gene expression profiling by DNA microarrays and metabolic fluxes in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

GENE EXPRESSION PROFILING; METABOLIC FLUXES;

EID: 0034008457     PISSN: 87567938     EISSN: None     Source Type: Journal    
DOI: 10.1021/bp000002n     Document Type: Article
Times cited : (124)

References (41)
  • 1
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena, M.; Shalon, D.; Davis, R. W.; Brown, P. O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995, 270, 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 2
    • 0032524383 scopus 로고    scopus 로고
    • Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome
    • Wang, D. G. et al. Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 1998, 280, 1077-1082.
    • (1998) Science , vol.280 , pp. 1077-1082
    • Wang, D.G.1
  • 4
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J. L.; Iyer, V. R.; Brown, P. O. Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale. Science 1997, 278, 680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 7
    • 0033578424 scopus 로고    scopus 로고
    • Systematic changes in gene expression patterns following adaptive evolution in yeast
    • Ferea, T. L.; Botstein, D.; Brown, P. O.; Rosenzweig, R. F. Systematic changes in gene expression patterns following adaptive evolution in yeast. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 9721-9726.
    • (1999) Proc. Natl. Acad. Sci. U.S.A. , vol.96 , pp. 9721-9726
    • Ferea, T.L.1    Botstein, D.2    Brown, P.O.3    Rosenzweig, R.F.4
  • 8
    • 0033610079 scopus 로고    scopus 로고
    • Gene expression profile of aging and its retardation by caloric restriction
    • Lee, C. K.; Klopp, R. G.; Weindruch, R.; Prolla, T. A. Gene expression profile of aging and its retardation by caloric restriction. Science 1999, 285, 1390-1393.
    • (1999) Science , vol.285 , pp. 1390-1393
    • Lee, C.K.1    Klopp, R.G.2    Weindruch, R.3    Prolla, T.A.4
  • 10
    • 0033136114 scopus 로고    scopus 로고
    • Functional genomic technologies: Creating new paradigms for fundamental and applied biology
    • Kao, C. M. Functional genomic technologies: creating new paradigms for fundamental and applied biology. Biotechnol. Prog. 1999, 15, 304-311.
    • (1999) Biotechnol. Prog. , vol.15 , pp. 304-311
    • Kao, C.M.1
  • 12
    • 0027980258 scopus 로고
    • Regulation of the citrate synthase (gltA) gene of Escherichia coli in response to anaerobiosis and carbon supply: Role of the arcA gene product
    • Park, S. J.; McCabe, J.; Turna, J.; Gunsalus, R. P. Regulation of the citrate synthase (gltA) gene of Escherichia coli in response to anaerobiosis and carbon supply: role of the arcA gene product. J. Bacteriol. 1994, 176, 5086-5092.
    • (1994) J. Bacteriol. , vol.176 , pp. 5086-5092
    • Park, S.J.1    McCabe, J.2    Turna, J.3    Gunsalus, R.P.4
  • 14
    • 0028264275 scopus 로고
    • Quick-check method to test the size of Escherichia coli plasmids
    • Akada, R. Quick-check method to test the size of Escherichia coli plasmids. Biotechnique 1994, 17, 58.
    • (1994) Biotechnique , vol.17 , pp. 58
    • Akada, R.1
  • 15
    • 0032526318 scopus 로고    scopus 로고
    • Detection of differentially expressed genes in primary tumor tissues using representational difference analysis coupled to microarray hybridization
    • Welford, S. M.; Gregg, J.; Chen, E.; Garrison, D.; Sorensen, P. H.; Denny, C. Y.; Nelson, S. F. Detection of differentially expressed genes in primary tumor tissues using representational difference analysis coupled to microarray hybridization. Nucleic Acids Res. 1998, 26, 3059-3065.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3059-3065
    • Welford, S.M.1    Gregg, J.2    Chen, E.3    Garrison, D.4    Sorensen, P.H.5    Denny, C.Y.6    Nelson, S.F.7
  • 16
    • 0001281745 scopus 로고    scopus 로고
    • Glycolysis
    • Neidhardt, F. C., Ed.; ASM Press: Washington, D.C.
    • Fraenkel, D. G. Glycolysis. In Escherichia coli and Salmonella; Neidhardt, F. C., Ed.; ASM Press: Washington, D.C., 1996; pp 189-198.
    • (1996) Escherichia Coli and Salmonella , pp. 189-198
    • Fraenkel, D.G.1
  • 17
    • 0029941168 scopus 로고    scopus 로고
    • The catabolite repressor/activator (Cra) protein of enteric bacteria
    • Saier, M. H., Jr.; Ramseier, T. M. The catabolite repressor/activator (Cra) protein of enteric bacteria. J. Bacteriol. 1996, 178, 3411-3417.
    • (1996) J. Bacteriol. , vol.178 , pp. 3411-3417
    • Saier, M.H.J.1    Ramseier, T.M.2
  • 18
    • 0028067589 scopus 로고
    • Metabolic responses to substrate futile cycling in escherichia coli
    • Chao, Y. P.; Liao, J. C. Metabolic responses to substrate futile cycling in Escherichia coli. J. Biol. Chem. 1994, 269, 5122-5126.
    • (1994) J. Biol. Chem. , vol.269 , pp. 5122-5126
    • Chao, Y.P.1    Liao, J.C.2
  • 19
    • 0015147278 scopus 로고
    • The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli
    • Lowry, O. H.; Carter, J.; Ward, J. B.; Glaser, L. The effect of carbon and nitrogen sources on the level of metabolic intermediates in Escherichia coli. J. Biol. Chem. 1971, 246, 6511-6521.
    • (1971) J. Biol. Chem. , vol.246 , pp. 6511-6521
    • Lowry, O.H.1    Carter, J.2    Ward, J.B.3    Glaser, L.4
  • 20
    • 0024077485 scopus 로고
    • The ptsH, ptsI, and crr genes of the Escherichia coli phosphoenolpyruvate dependent phosphotransferase system: A complex operon with several modes of transcription
    • De Reuse, H.; Danchin, A. The ptsH, ptsI, and crr genes of the Escherichia coli phosphoenolpyruvate dependent phosphotransferase system: a complex operon with several modes of transcription. J. Bacteriol. 1988, 170, 3827-3837.
    • (1988) J. Bacteriol. , vol.170 , pp. 3827-3837
    • De Reuse, H.1    Danchin, A.2
  • 21
    • 0026769609 scopus 로고
    • Evidence for two promoters upstream of the pts operon: Regulation by the cAMP receptor protein regulatory complex
    • Fox, D. K.; Presper, K. A.; Adhya, S.; Roseman, S.; Garges, S. Evidence for two promoters upstream of the pts operon: Regulation by the cAMP receptor protein regulatory complex. Proc. Natl. Acad. Sci. U.S.A. 1992, 89, 7056-7059.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 7056-7059
    • Fox, D.K.1    Presper, K.A.2    Adhya, S.3    Roseman, S.4    Garges, S.5
  • 22
    • 0027955327 scopus 로고
    • Determination of the growth rate-regulated steps in expression of the escherichia coli K-12 gnd gene
    • Pearse, A. J.; Wolf, R. E. Determination of the growth rate-regulated steps in expression of the Escherichia coli K-12 gnd gene. J. Bacteriol. 1994, 176, 115-122.
    • (1994) J. Bacteriol. , vol.176 , pp. 115-122
    • Pearse, A.J.1    Wolf, R.E.2
  • 24
    • 0030463296 scopus 로고    scopus 로고
    • Flux analysis and control of the central metabolic pathways in Escherichia coli
    • Holms, H. Flux analysis and control of the central metabolic pathways in Escherichia coli. FEMS Microbiol. Rev. 1996, 19, 85-116.
    • (1996) FEMS Microbiol. Rev. , vol.19 , pp. 85-116
    • Holms, H.1
  • 25
    • 0017759929 scopus 로고
    • The enzymic interconversion of acetate and acetyl-coenzyme A in Escherichia coli
    • Brown, T. D.; Jones-Mortimer, M. C.; Kornberg, H. L. The enzymic interconversion of acetate and acetyl-coenzyme A in Escherichia coli. J. Gen. Microbiol. 1977, 102, 327-336.
    • (1977) J. Gen. Microbiol. , vol.102 , pp. 327-336
    • Brown, T.D.1    Jones-Mortimer, M.C.2    Kornberg, H.L.3
  • 26
    • 0028138812 scopus 로고
    • Identification and characterization of the ackA-pta operon and complementation of the acetate utilization by an ack-pta deletion mutant of Escherichia coli
    • Kakuda, H.; Hosono, K.; Shiroishi, K.; Ichihara, S. Identification and characterization of the ackA-pta operon and complementation of the acetate utilization by an ack-pta deletion mutant of Escherichia coli. J. Biochem. 1994, 116, 916-922.
    • (1994) J. Biochem. , vol.116 , pp. 916-922
    • Kakuda, H.1    Hosono, K.2    Shiroishi, K.3    Ichihara, S.4
  • 27
    • 0027207516 scopus 로고
    • Is acetyl phosphate a global signal in Escherichia coli?
    • McCleary, W. R.; Stock, J. B.; Ninfa, A. J. Is acetyl phosphate a global signal in Escherichia coli? J. Bacteriol. 1993, 175, 2793-2798.
    • (1993) J. Bacteriol. , vol.175 , pp. 2793-2798
    • McCleary, W.R.1    Stock, J.B.2    Ninfa, A.J.3
  • 28
    • 0026623120 scopus 로고
    • Anaerobic induction of pyruvate formate-lyase gene expression is mediated by the ArcA and Fnr proteins
    • Sawers, G.; Suppmann, B. Anaerobic induction of pyruvate formate-lyase gene expression is mediated by the ArcA and Fnr proteins. J. Bacteriol. 1992, 174, 3474-3478.
    • (1992) J. Bacteriol. , vol.174 , pp. 3474-3478
    • Sawers, G.1    Suppmann, B.2
  • 29
    • 0025373543 scopus 로고
    • Transcriptional analysis of the gene encoding pyruvate formate-lyase activating enzyme of Escherichia coli
    • Sauter, M.; Sawers, R. G. Transcriptional analysis of the gene encoding pyruvate formate-lyase activating enzyme of Escherichia coli. Mol. Microbiol. 1990, 4, 355-363.
    • (1990) Mol. Microbiol. , vol.4 , pp. 355-363
    • Sauter, M.1    Sawers, R.G.2
  • 30
    • 0025063286 scopus 로고
    • A radical-chemical route to acetyl-CoA: The anaerobically induced pyruvate formate-lyase system of Escherichia coli
    • Knappe, J.; Sawers, G, A radical-chemical route to acetyl-CoA: the anaerobically induced pyruvate formate-lyase system of Escherichia coli. FEMS Microbiol. Rev. 1990, 75, 383-398.
    • (1990) FEMS Microbiol. Rev. , vol.75 , pp. 383-398
    • Knappe, J.1    Sawers, G.2
  • 31
    • 0023703923 scopus 로고
    • Glyoxylate bypass operon of Escherichia coli: Cloning and determination of the functional map
    • Chung, T.; Klumpp, D. J.; LaPorte, D. C. Glyoxylate bypass operon of Escherichia coli: cloning and determination of the functional map. J. Bacteriol. 1988, 170, 386-392.
    • (1988) J. Bacteriol. , vol.170 , pp. 386-392
    • Chung, T.1    Klumpp, D.J.2    LaPorte, D.C.3
  • 32
    • 0002961439 scopus 로고    scopus 로고
    • Tricarboxylic acid cycle and glyoxylate bypass
    • Neidhardt, F. C. Ed.; ASM Press: Washington, D.C.
    • Cronan, J. E., Jr.; Laporte, D. Tricarboxylic acid cycle and glyoxylate bypass. In Escherichia coli and Salmonella; Neidhardt, F. C. Ed.; ASM Press: Washington, D.C., 1999; pp 206-216.
    • (1999) Escherichia Coli and Salmonella , pp. 206-216
    • Cronan, J.E.J.1    Laporte, D.2
  • 33
    • 0028929883 scopus 로고
    • Regulation of succinate dehydrogenase (sdhCDAB) operon expression in Escherichia coli in response to carbon supply and anaerobiosis: Role of ArcA and Fnr
    • Park, S. J.; Tseng, C. P.; Gunsalus, R. P. Regulation of succinate dehydrogenase (sdhCDAB) operon expression in Escherichia coli in response to carbon supply and anaerobiosis: role of ArcA and Fnr. Mol. Microbiol. 1995, 15, 473-482.
    • (1995) Mol. Microbiol. , vol.15 , pp. 473-482
    • Park, S.J.1    Tseng, C.P.2    Gunsalus, R.P.3
  • 34
    • 0028815572 scopus 로고
    • Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability
    • Park, S. J.; Cotter, P. A.; Gunsalus, R. P. Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability. J. Bacteriol. 1995, 177, 6652-6656.
    • (1995) J. Bacteriol. , vol.177 , pp. 6652-6656
    • Park, S.J.1    Cotter, P.A.2    Gunsalus, R.P.3
  • 35
    • 0030791232 scopus 로고    scopus 로고
    • Aerobic regulation of the sucABCD genes in Escherichia coli, which encode α-ketoglutarate dehydrogenase and succinyl coenzyme A synthetase: Role of ArcA, Fnr, and the upstream sdhCDAB promoter
    • Park, S. J.; Chao, G.; Gunsalus, R. P. Aerobic regulation of the sucABCD genes in Escherichia coli, which encode α-ketoglutarate dehydrogenase and succinyl coenzyme A synthetase: role of ArcA, Fnr, and the upstream sdhCDAB promoter. J. Bacteriol. 1997, 179, 4138-4142.
    • (1997) J. Bacteriol. , vol.179 , pp. 4138-4142
    • Park, S.J.1    Chao, G.2    Gunsalus, R.P.3
  • 36
    • 0028856397 scopus 로고
    • Oxygen, iron, carbon, and superoxide control of the fumarase fumA and fumc genes of Escherichia coli: Role of the orcA, fnr, and soxR gene products
    • Park, S. J.; Gunsalus, R. P. Oxygen, iron, carbon, and superoxide control of the fumarase fumA and fumC genes of Escherichia coli: role of the orcA, fnr, and soxR gene products. J. Bacteriol. 1995, 177, 6255-6262.
    • (1995) J. Bacteriol. , vol.177 , pp. 6255-6262
    • Park, S.J.1    Gunsalus, R.P.2
  • 37
    • 0001348712 scopus 로고    scopus 로고
    • Biosynthesis of the branched-chain amino acids
    • Neidhardt, F. C. Ed.; ASM Press: Washington, D.C.
    • Umbarger, H. E. Biosynthesis of the branched-chain amino acids. In Escherichia coli and Salmonella; Neidhardt, F. C. Ed.; ASM Press: Washington, D.C., 1996; pp 442-457.
    • (1996) Escherichia Coli and Salmonella , pp. 442-457
    • Umbarger, H.E.1
  • 38
    • 0000044852 scopus 로고
    • Differential roles of the Escherichia coli fumarases and fnr-dependent expression of fumarase B and aspartase
    • Woods, S. A.; Guest, J. R. Differential roles of the Escherichia coli fumarases and fnr-dependent expression of fumarase B and aspartase. FEMS Microbiol. Lett. 1987, 48, 219-224.
    • (1987) FEMS Microbiol. Lett. , vol.48 , pp. 219-224
    • Woods, S.A.1    Guest, J.R.2
  • 39
    • 0000605871 scopus 로고    scopus 로고
    • Biosynthesis of the aromatic amino acids
    • Neidhardt, F. C. Ed.; ASM Press: Washington, D.C.
    • Pittard, A. J. Biosynthesis of the aromatic amino acids. In Escherichia coli and Salmonella; Neidhardt, F. C. Ed.; ASM Press: Washington, D.C., 1996; pp 458-484.
    • (1996) Escherichia Coli and Salmonella , pp. 458-484
    • Pittard, A.J.1
  • 40
    • 0023240043 scopus 로고
    • The heat shock response of Escherichia coli is regulated by changes in the concentration of σ-32
    • Straus, D. B.; Walter, W. A.; Gross, C. A. The heat shock response of Escherichia coli is regulated by changes in the concentration of σ-32. Nature 1987, 329, 348-351.
    • (1987) Nature , vol.329 , pp. 348-351
    • Straus, D.B.1    Walter, W.A.2    Gross, C.A.3
  • 41
    • 0027983768 scopus 로고
    • Induction of heat shock proteins by abnormal proteins results from stabilization and not increased synthesis of σ-32 in escherichia coli
    • Kanemori, M.; Mori, H.; Yura, T. Induction of heat shock proteins by abnormal proteins results from stabilization and not increased synthesis of σ-32 in Escherichia coli. J. Bacterial. 1994, 176, 5648-5653.
    • (1994) J. Bacterial. , vol.176 , pp. 5648-5653
    • Kanemori, M.1    Mori, H.2    Yura, T.3


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