Analysis of topoisomerase function in bacterial replication fork movement: Use of DNA microarrays

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 17, 2000, Pages 9419-9424

  Khodursky, Arkady B ^a,b   Peter, Brian J ^a   Schmid, Molly B ^c   DeRisi, Joseph ^b,d   Botstein, David ^b   Brown, Patrick O ^b,f   Cozzarelli, Nicholas R ^a,e  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b STANFORD UNIVERSITY MEDICAL CENTER   (United States)

^c Microcide Pharmaceuticals Inc   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e Howard Hughes Medical Institute ^*  (United States)

^f HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

Coumarins; Positive supercoiling; Topo IV

Indexed keywords

COUMARIN; DNA; DNA TOPOISOMERASE;

ARTICLE; CHROMOSOME REPLICATION; DNA REPLICATION; DNA SUPERCOILING; DNA SYNTHESIS; ENZYME INHIBITION; ESCHERICHIA COLI; GENOME; NONHUMAN; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PROKARYOTA;

EID: 0034662998     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.17.9419     Document Type: Article

References (37)

1. Wang, J. C. (1996) Annu. Rev. Biochem. 65, 635-692.
2. Cairns, J. (1963) J. Mol. Biol. 6, 208-213.
3. Drlica, K. & Zhao, Z. (1997) Microbiol. Mol. Biol. Rev. 61, 377-392.
4. Kornberg, A. & Baker, T. A. (1992) in DNA Replication (Freeman, New York), pp. 387-392.
5. Filutowicz, M. & Jonczyk, P. (1983) Mol. Gen. Genet. 191, 282-287.
6. Khodursky, A. B., Zechiedrich, E. L. & Cozzarelli, N. R. (1995) Proc. Natl. Acad. Sci. USA 92, 11801-11805.
7. Belland, R. J., Morrison, S. G., Ison, C. & Huang, W. M. (1994) Mol. Microbiol. 14, 371-380.
8. Maniatis, T., Fritsch, E. F. & Sambrook, J. (1982) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. Press, Plainview, NY), Vol. 1, p. 1.12.
9. Crisona, N. J., Kanaar, R., Gonzalez, T. N., Zechiedrich, E. L., Klippel, A. & Cozzarelli, N. R. (1994) J. Mol. Biol. 243, 437-457.
10. Blattner, F. R., Plunkett, G., Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., et al. (1997) Science 277, 1453-1462.
11. Sundin, O. & Varshavsky, A. (1980) Cell 21, 103-114.
12. Kampranis, S., Gormley, N., Tranter, R., Orphanides, G. & Maxwell, A. (1999) Biochemistry 38, 1967-1976.
13. Nikaido, N. & Thanassi, D. G. (1993) Antimicrob. Agents Chemother. 37, 1393-1399.
14. Kato, J.-i., Nishimura, Y., Imamura, R., Niki, H., Hiraga, S. & Susuki, H. (1990) Cell 63, 393-404.
15. Schmid, M. B. (1990) J. Bacteriol. 172, 5416-5424.
16. Schena, M., Shalon, D., Davis, R. W. & Brown, P. O. (1995) Science 270, 467-470.
17. Carl, P. L. (1970) Mol. Gen. Genet. 109, 107-122.
18. Ullsperger, C. J., Vologodskii, A. A. & Cozzarelli, N. R. (1995) in Nucleic Acids and Molecular Biology, eds. Lilley, D. M. J. & Eckstein, F. (Springer, Berlin), Vol. 9, pp. 115-142.
19. Postow, L., Peter, B. J. & Cozzarelli, N. R. (1999) BioEssays 21, 805-808.
20. Wu, H.-Y., Shyy, S., Wang, J. C. & Liu, L. F. (1988) Cell 53, 433-440.
21. Liu, L. F. & Wang, J. C. (1987) Proc. Natl. Acad. Sci. USA 84, 7024-7027.
22. Lockshon, D. & Morris, D. R. (1983) Nucleic Acids Res. 11, 2999-3017.
23. Rybenkov, V. V., Vologodskii, A. V. & Cozzarelli, N. R. (1997) J. Mol. Biol. 267, 312-323.
24. Drlica, K. (1984) Microbiol. Rev. 48, 273-289.
25. Orr, E., Fairweather, N. F., Holland, I. B. & Pritchard, R. H. (1979) Mol. Gen. Genet. 177, 103-112.
26. Filutowicz, M. (1980) Mol. Gen. Genet. 177, 301-309.
27. Mirkin, S. & Shmerling, Z. (1982) Mol. Gen. Genet. 188, 91-95.
28. Staczek, P. & Higgins, N. P. (1998) Mol. Microbiol. 29, 1435-1448.
29. Gari, E., Figueroa-Bossi, N., Blanc-Potard, A. B., Spirito, F., Schmid, M. B. & Bossi, L. (1996) Mol. Microbiol. 21, 111-122.
30. Kreuzer, K. N. & Cozzarelli, N. R. (1979) J. Bacteriol. 140, 424-435.
31. Khodursky, A. B. & Cozzarelli, N. R. (1998) J. Biol. Chem. 273, 27668-27677.
32. Peter, B. J., Ullsperger, C., Hiasa, H., Marians, K. J. & Cozzarelli, N. R. (1998) Cell 94, 819-827.
33. DeRisi, J., Iyer, V. & Brown, P. (1997) Science 278, 680-686.
34. Pollack, J., Perou, C., Alizadeh, A., Eisen, M., Pergamenschikov, A., Williams, C., Jeffrey, S., Botstein, D. & Brown, P. (1999) Nat. Genet. 23, 41-46.
35. Hiasa, H. & Marians, K. J. (1994) J. Biol. Chem. 269, 16371-16375.
36. Kim, R. A. & Wang, J. C. (1989) J. Mol. Biol. 208, 257-267.
37. Pettijohn, D. E. (1982) Cell 30, 667-669.