-
1
-
-
0033536012
-
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
-
Alon, U., N. Barkai, D.A. Notterman, K. Gish, S. Ybarra, D. Mack, and A.J. Levine. 1999. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl. Acad. Sci. 96: 6745-6750.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 6745-6750
-
-
Alon, U.1
Barkai, N.2
Notterman, D.A.3
Gish, K.4
Ybarra, S.5
Mack, D.6
Levine, A.J.7
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., W. Gish, W. Miller, E.W. Myers, and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0032893084
-
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
-
Bairoch, A. and R. Apweiler. 1999. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. Nucleic Acids Res. 27: 49-54.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 49-54
-
-
Bairoch, A.1
Apweiler, R.2
-
4
-
-
84984934346
-
Gene expression informatics - It's all in your mine
-
Bassett, D.E., Jr., M.B. Eisen, and M.S. Boguski. 1999. Gene expression informatics - it's all in your mine. Nat. Genet. 21: 51-55.
-
(1999)
Nat. Genet.
, vol.21
, pp. 51-55
-
-
Bassett D.E., Jr.1
Eisen, M.B.2
Boguski, M.S.3
-
5
-
-
0032900994
-
GenBank
-
Benson, D.A., M.S. Boguski, D.J. Lipman, J. Ostell, B.F. Ouellette, B.A. Rapp, and D.E. Wheeler. 1999. GenBank. Nucleic Acids Res. 27: 12-17.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 12-17
-
-
Benson, D.A.1
Boguski, M.S.2
Lipman, D.J.3
Ostell, J.4
Ouellette, B.F.5
Rapp, B.A.6
Wheeler, D.E.7
-
6
-
-
0017751668
-
The Protein Data Bank. A computer-based archival file for macromolecular structures
-
Bernstein, F.C., T.F. Koetzle, G.J. Williams, E.F. Meyer, Jr., M.D. Brice, J.R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi. 1977. The Protein Data Bank. A computer-based archival file for macromolecular structures. Eur. J. Biochem. 80: 319-324.
-
(1977)
Eur. J. Biochem.
, vol.80
, pp. 319-324
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer E.F., Jr.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
7
-
-
0004114473
-
-
Cherry, J.M., C. Ball, S. Chervitz, K. Dolinski, S. Dwight, M. Harris, E. Hester, G. Juvik, A. Malekian, T. Roe, S. Weng, and D. Botstein. 1999. Saccharomyces Genome Database. http://genome-www.stanford.edu/Saccharomyces/.
-
(1999)
Saccharomyces Genome Database
-
-
Cherry, J.M.1
Ball, C.2
Chervitz, S.3
Dolinski, K.4
Dwight, S.5
Harris, M.6
Hester, E.7
Juvik, G.8
Malekian, A.9
Roe, T.10
Weng, S.11
Botstein, D.12
-
8
-
-
0032112293
-
A genome-wide transcriptional analysis of the mitotic cell cycle
-
Cho, R.J., M.J. Campbell, E.A. Winzeler, L. Steinmetz, A. Conway, L. Wodicka, T.G. Wolfsberg, A.E. Gabrielian, D. Landsman, D.J. Lockhart, and R.W. Davis. 1998. A genome-wide transcriptional analysis of the mitotic cell cycle. Mol. Cell 2: 65-73.
-
(1998)
Mol. Cell
, vol.2
, pp. 65-73
-
-
Cho, R.J.1
Campbell, M.J.2
Winzeler, E.A.3
Steinmetz, L.4
Conway, A.5
Wodicka, L.6
Wolfsberg, T.G.7
Gabrielian, A.E.8
Landsman, D.9
Lockhart, D.J.10
Davis, R.W.11
-
9
-
-
0032561246
-
The transcriptional program of sporulation in budding yeast
-
Chu, S., J. DeRisi, M. Eisen, J. Mulholland, D. Botstein, P.O. Brown, and I. Herskowitz. 1998. The transcriptional program of sporulation in budding yeast. Science 282: 699-705.
-
(1998)
Science
, vol.282
, pp. 699-705
-
-
Chu, S.1
DeRisi, J.2
Eisen, M.3
Mulholland, J.4
Botstein, D.5
Brown, P.O.6
Herskowitz, I.7
-
10
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J.L., V.R. Iyer, and P.O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
Derisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
11
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., P.T. Spellman, P.O. Brown, and D. Botstein. 1998. Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. 95: 14863-14868.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 14863-14868
-
-
Eisen, M.B.1
Spellman, P.T.2
Brown, P.O.3
Botstein, D.4
-
12
-
-
17344372326
-
Data management and analysis for gene expression arrays
-
Ermolaeva, O., M. Rastogi, K.D. Pruitt, G.D. Schuler, M.L. Bittner, Y. Chen, R. Simon, P. Meltzer, J.M. Trent, and M.S. Boguski. 1998. Data management and analysis for gene expression arrays. Nat. Genet. 20: 19-23.
-
(1998)
Nat. Genet.
, vol.20
, pp. 19-23
-
-
Ermolaeva, O.1
Rastogi, M.2
Pruitt, K.D.3
Schuler, G.D.4
Bittner, M.L.5
Chen, Y.6
Simon, R.7
Meltzer, P.8
Trent, J.M.9
Boguski, M.S.10
-
13
-
-
0343840395
-
-
European Bioinformatics Institute. 1999. ArrayExpress. http://www.ebi.ac.uk/arrayexpress/.
-
(1999)
ArrayExpress
-
-
-
14
-
-
0032694167
-
A sampling of the yeast proteome
-
Futcher, B., G.I. Latter, P. Monardo, C.S. McLaughlin, and J.I. Garrels. 1999. A sampling of the yeast proteome. Mol. Cell. Biol. 19: 7357-7368.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 7357-7368
-
-
Futcher, B.1
Latter, G.I.2
Monardo, P.3
McLaughlin, C.S.4
Garrels, J.I.5
-
16
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S.P., B. Rist, S.A. Gerber, F. Turecek, M.H. Gelb, and R. Aebersold. 1999a. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17: 994-999.
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
17
-
-
0033016717
-
Correlation between protein and mRNA abundance in yeast
-
Gygi, S.P., Y. Rochon, B.R. Franza, and R. Aebersold. 1999b. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19: 1720-1730.
-
(1999)
Mol. Cell. Biol.
, vol.19
, pp. 1720-1730
-
-
Gygi, S.P.1
Rochon, Y.2
Franza, B.R.3
Aebersold, R.4
-
18
-
-
0030725715
-
Functional genomics: It's all how you read it
-
Hieter, P. and M. Boguski. 1997. Functional genomics: It's all how you read it. Science 278: 601-602.
-
(1997)
Science
, vol.278
, pp. 601-602
-
-
Hieter, P.1
Boguski, M.2
-
19
-
-
0032567081
-
Dissecting the regulatory circuitry of a eukaryotic genome
-
Holstege, F.C., E.G. Jennings, J.J. Wyrick, T.I. Lee, C.J. Hengartner, M.R. Green, T.R. Golub, E.S. Lander, and R.A. Young. 1998. Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95: 717-728.
-
(1998)
Cell
, vol.95
, pp. 717-728
-
-
Holstege, F.C.1
Jennings, E.G.2
Wyrick, J.J.3
Lee, T.I.4
Hengartner, C.J.5
Green, M.R.6
Golub, T.R.7
Lander, E.S.8
Young, R.A.9
-
20
-
-
0030805979
-
Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12
-
Link, A.J., K. Robison, and G.M. Church. 1997. Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18: 1259-1313.
-
(1997)
Electrophoresis
, vol.18
, pp. 1259-1313
-
-
Link, A.J.1
Robison, K.2
Church, G.M.3
-
21
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D.J., H. Dong, M.C. Byrne, M.T. Follettie, M.V. Gallo, M.S. Chee, M. Mittmann, C. Wang, M. Kobayashi, H. Horton, and E.L. Brown. 1996. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14: 1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
22
-
-
0031730097
-
Drug target validation and identification of secondary drug target effects using DNA microarrays
-
Marton, M.J., J.L. DeRisi, H.A. Bennett, V.R. Iyer, M.R. Meyer, C.J. Roberts, R. Stoughton, J. Burchard, D. Slade, H. Dai et al. 1998. Drug target validation and identification of secondary drug target effects using DNA microarrays. Nat. Med. 4: 1293-1301.
-
(1998)
Nat. Med.
, vol.4
, pp. 1293-1301
-
-
Marton, M.J.1
Derisi, J.L.2
Bennett, H.A.3
Iyer, V.R.4
Meyer, M.R.5
Roberts, C.J.6
Stoughton, R.7
Burchard, J.8
Slade, D.9
Dai, H.10
-
23
-
-
0032893083
-
MIPS: A database for genomes and protein sequences
-
Mewes, H., K. Heumann, A. Kaps, K. Mayer, F. Pfeiffer, S. Stocker, and D. Frishman. 1999. MIPS: A database for genomes and protein sequences. Nucleic Acids Res. 27: 44-48.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 44-48
-
-
Mewes, H.1
Heumann, K.2
Kaps, A.3
Mayer, K.4
Pfeiffer, F.5
Stocker, S.6
Frishman, D.7
-
24
-
-
0033524387
-
Mediator protein mutations that selectively abolish activated transcription
-
Myers, L.C., C.M. Gustafsson, K.C. Hayashibara, P.O. Brown, and R.D. Kornberg. 1999. Mediator protein mutations that selectively abolish activated transcription. Proc. Natl. Acad. Sci. 96: 67-72.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 67-72
-
-
Myers, L.C.1
Gustafsson, C.M.2
Hayashibara, K.C.3
Brown, P.O.4
Kornberg, R.D.5
-
25
-
-
0343840385
-
-
National Center for Biotechnology Information. 1999. Gene expression omnibus, http://www.ncbi.nlm.nih.gov/geo/.
-
(1999)
Gene Expression Omnibus
-
-
-
26
-
-
13044312108
-
Proteomic definition of normal human luminal and myoepithelial breast cells purified from reduction mammoplasties
-
Page, M.J., B. Amess, R.R. Townsend, R. Parekh, A. Herath, L. Brusten, M.J. Zvelebil, R.C. Stein, M.D. Waterfield, S.C. Davies, and M.J. O'Hare. 1999. Proteomic definition of normal human luminal and myoepithelial breast cells purified from reduction mammoplasties. Proc. Natl. Acad. Sci. 96: 12589-12594.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 12589-12594
-
-
Page, M.J.1
Amess, B.2
Townsend, R.R.3
Parekh, R.4
Herath, A.5
Brusten, L.6
Zvelebil, M.J.7
Stein, R.C.8
Waterfield, M.D.9
Davies, S.C.10
O'Hare, M.J.11
-
27
-
-
13044304179
-
Distinctive gene expression patterns in human mammary epithelial cells and breast cancers
-
Perou, C.M., S.S. Jeffrey, M. van de Rijn, C.A. Rees, M.B. Eisen, D.T. Ross, A. Pergamenschikov, C.F. Williams, S.X. Zhu, J.C. Lee et al. 1999. Distinctive gene expression patterns in human mammary epithelial cells and breast cancers. Proc. Natl. Acad. Sci. 96: 9212-9217.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 9212-9217
-
-
Perou, C.M.1
Jeffrey, S.S.2
Van De Rijn, M.3
Rees, C.A.4
Eisen, M.B.5
Ross, D.T.6
Pergamenschikov, A.7
Williams, C.F.8
Zhu, S.X.9
Lee, J.C.10
-
28
-
-
0031787969
-
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
-
Roth, F.P., J.D. Hughes, P.W. Estep, and G.M. Church. 1998. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol. 16: 939-945.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 939-945
-
-
Roth, F.P.1
Hughes, J.D.2
Estep, P.W.3
Church, G.M.4
-
29
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, P.T., G. Sherlock, M.Q. Zhang, V.R. Iyer, K. Anders, M.B. Eisen, P.O. Brown, D. Botstein, and B. Futcher. 1998. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell 9: 3273-3297.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
30
-
-
0031837058
-
Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. Coli
-
Tavazoie, S. and G. Church. 1998. Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli. Nat. Biotechnol. 16: 566-571.
-
(1998)
Nat. Biotechnol.
, vol.16
, pp. 566-571
-
-
Tavazoie, S.1
Church, G.2
-
31
-
-
0033028596
-
Systematic determination of genetic network architecture
-
Tavazoie, S., J.D. Hughes, M.J. Campbell, R.J. Cho, and G.M. Church. 1999. Systematic determination of genetic network architecture. Nat. Genet. 22: 281-285.
-
(1999)
Nat. Genet.
, vol.22
, pp. 281-285
-
-
Tavazoie, S.1
Hughes, J.D.2
Campbell, M.J.3
Cho, R.J.4
Church, G.M.5
-
33
-
-
0028789793
-
Serial analysis of gene expression
-
Velculescu, V.E., L. Zhang, B. Vogelstein, and K.W. Kinzler. 1995. Serial analysis of gene expression. Science 270: 484-487.
-
(1995)
Science
, vol.270
, pp. 484-487
-
-
Velculescu, V.E.1
Zhang, L.2
Vogelstein, B.3
Kinzler, K.W.4
-
34
-
-
0031442518
-
Characterization of the yeast transcriptome
-
Velculescu, V.E., L. Zhang, W. Zhou, J. Vogelstein, M.A. Basrai, D.E. Bassett, Jr., P. Hieter, B. Vogelstein, and K.W. Kinzler. 1997. Characterization of the yeast transcriptome. Cell 88: 243-251.
-
(1997)
Cell
, vol.88
, pp. 243-251
-
-
Velculescu, V.E.1
Zhang, L.2
Zhou, W.3
Vogelstein, J.4
Basrai, M.A.5
Bassett D.E., Jr.6
Hieter, P.7
Vogelstein, B.8
Kinzler, K.W.9
-
35
-
-
0026716837
-
A whole genome approach to in vivo DNA-protein interactions in E. coli
-
Wang, M.X. and G.M. Church. 1992. A whole genome approach to in vivo DNA-protein interactions in E. coli. Nature 360: 606-610.
-
(1992)
Nature
, vol.360
, pp. 606-610
-
-
Wang, M.X.1
Church, G.M.2
-
36
-
-
0031035181
-
An information-intensive approach to the molecular pharmacology of cancer
-
Weinstein, J.N., T.G. Myers, P.M. O'Connor, S.H. Friend, A.J. Fornace, Jr., K.W. Kohn, T. Fojo, S.E. Bates, E.V. Rubinstein, N.L. Anderson et al. 1997. An information-intensive approach to the molecular pharmacology of cancer. Science 275: 343-349.
-
(1997)
Science
, vol.275
, pp. 343-349
-
-
Weinstein, J.N.1
Myers, T.G.2
O'Connor, P.M.3
Friend, S.H.4
Fornace A.J., Jr.5
Kohn, K.W.6
Fojo, T.7
Bates, S.E.8
Rubinstein, E.V.9
Anderson, N.L.10
-
37
-
-
0031915896
-
Earge-scale temporal gene expression mapping of central nervous system development
-
Wen, X., S. Fuhrman, G.S. Michaels, D.B. Carr, S. Smith, J.E. Barker, and R. Somogyi. 1998. Earge-scale temporal gene expression mapping of central nervous system development. Proc. Natl. Acad. Sci. 95: 334-339.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 334-339
-
-
Wen, X.1
Fuhrman, S.2
Michaels, G.S.3
Carr, D.B.4
Smith, S.5
Barker, J.E.6
Somogyi, R.7
-
38
-
-
0031453850
-
Genome-wide expression monitoring in Saccharomyces cerevisiae
-
Wodicka, L., H. Dong, M. Mittmann, M.H. Ho, and D.J. Lockhart. 1997. Genome-wide expression monitoring in Saccharomyces cerevisiae. Nat. Biotechnol. 15: 1359-1367.
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 1359-1367
-
-
Wodicka, L.1
Dong, H.2
Mittmann, M.3
Ho, M.H.4
Lockhart, D.J.5
|