The Escherichia coli genome sequence: The end of an era or the start of the FUN?

Molecular Microbiology

Volumn 26, Issue 3, 1997, Pages 417-422

  Hinton, Jay C D ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL VIRULENCE; DNA SEQUENCE; ESCHERICHIA COLI; GENE CONTROL; GENE EXPRESSION REGULATION; GENE MAPPING; GENETIC ANALYSIS; GENOME; MICROBIOLOGY; NONHUMAN; NOTE; PRIORITY JOURNAL;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0030681279     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1997.6371988.x     Document Type: Note

References (28)

1. Bender, R.A. (1996) Variations on a theme by Escherichia. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn. Neidhardt, F. (ed.). Washington DC: American Society for Microbiology Press, pp. 4-12.
2. Berlyn, M.K.B., Brookes-Low, K., Rudd, K.E., and Singer, M. (1996) Linkage map of Escherichia coli K12, edition 9. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn. Neidhardt, F. (ed.). Washington DC: American Society for Microbiology Press, pp. 1715-1902.
3. Blattner, F.R. (1983) Biological frontiers. Science 222: 719-720.
4. Blattner, F.R., Plunkett, III, G., Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F., Gregor, J., Davis, N.W., Kirkpatrick, H.A., Goeden, M.A., Rose, D.J., Mau, B., and Shau, Y. (1997) The complete genome sequence of Escherichia coli K12. Science 277: 1453-1462.
5. Bray, D. (1997) Reductionism for biochemists: how to survive the protein jungle. Trends Biochem Sci 22: 325-326.
6. Chuang, S.-E., Daniels, D.L., and Blattner, F.R. (1993) Global regulation of gene expression in Escherichia coli. J Bacteriol 175: 2026-2036.
7. De Risi, J., Penland, L., Brown, P.O., Bittner, M.L., Meltzer, P.S., Ray, M., Chen, Y., Su, Y.A., and Trent, J.M. (1996) Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genet 14: 457-60.
8. Droffner, M.L., and Yamamoto, N. (1992) Demonstration of cell operon expression of Escherichia. coli, Salmonella typhimurium and Pseudomonas aeruginosa at elevated temperatures refractory to their growth. Appl Environ Microbiol 58: 1784-1785.
9. Dujon, B. (1996) The Yeast genome project: what did we learn? Trends Genet 12: 263-270.
10. Fields, S., and Song, O. (1989) A novel genetic system to detect protein-protein interactions. Nature 340: 245-246.
11. Groisman, E.A., and Ochman, H. (1994) How to become a pathogen. Trends Microbiol 2: 289-294.
12. Guzzo, A., and DuBow, M.S. (1994) A luxAB transcriptional fusion to the cryptic celF gene of Escherichia coli displays increased luminescence in the presence of nickel. Mol Gen Genet 242: 455-460.
13. Hénaut, A., and Danchin, A. (1996) Analysis and predictions from Escherichia coli sequences, or E. coli in silico. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn. Neidhardt, F. (ed.). Washington DC: American Society for Microbiology Press, pp. 2047-2066.
14. Heithoff, D.M., Conner, C.P., and Mahan, M.J. (1997) Dissecting the biology of a pathogen during infection Trends Microbiol 5: (in press).
15. Hensel, M., and Holden, D.W. (1996) Molecular genetic approaches for the study of virulence in both pathogenic bacteria and fungi. Microbiology 142: 1049-1058.
16. Kohara, Y., Akiyama, K., and Isono, K. (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50: 495-508.
17. Koonin, E.V., Tatusov, R.L., and Rudd, K.E. (1996a) Escherichia coli protein sequences: functional and evolutionary implications. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn. Neidhardt, F. (ed.). Washington DC: American Society for Microbiology Press, pp. 2203-2217.
18. Koonin, E.V., Tatusov, R.L., and Rudd, K.E. (1996b) Protein sequence comparison at genome scale. Methods Enzymol 266: 295-322.
19. Koonin, E.V., Mushegian, A.R., Galperin, M.Y., and Walker, D.R. (1997) Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea. Mol Microbiol 25: 619-637.
20. Mann, M., and Wilm, M. (1995) Electrospray mass spectrometry for protein characterization. Trends Biochem Sci 20: 219-224.
21. Médigue, C., Rouxel, T., Vigier, P., Hénaut, A., and Danchin, A. (1991) Evidence for horizontal gene transfer in Escherichia coli speciation. J Mol Biol 222: 851-856.
22. Neidhardt, F. (ed.) (1996) Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn. Washington DC: American Society for Microbiology Press.
23. Ochman, H., and Lawrence, J.G. (1996) Phylogenetics and the amelioration of bacterial genomes. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn. Neidhardt, F. (ed.). Washington DC: American Society for Microbiology Press, pp. 2627-2637.
24. Riley, M., and Labedan, B. (1996) Escherichia coli gene products: physiological functions and common ancestries. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn. Neidhardt, F. (ed.). Washington DC: American Society for Microbiology Press, pp. 2118-2202.
25. Shapiro, J.A. (1995) The significances of bacterial colony patterns. Bioessays 17: 597-607.
26. Singer, B.S., Shtatland, T., Brown, D., and Gold, L. (1997) Libraries for genomic SELEX. Nucleic Acids Res 25: 781-786.
27. Tomb, J.-F., White, O., Kerlavage, A.R., Clayton, R.A., Sutton, G.G., Fleischmann, R.D., Ketchum, K.A., Klenk, H.P., Gill, S., Dougherty, B.A., Nelson, K., Quackenbush, J., Zhou, L., Kirkness, E.F., Peterson, S., Loftus, B., Richardson, D., Dodson, R., Khalak, H.G., Glodek, A., McKenney, K., Fitzgerald, L.M., Lee, N., Adams, M.D., Hickey, E.K., Berg, D.E., Gocayne, J.D., Utterback, T.R., Peterson, J.D., Kelley, J.M., Cotton, M.D., Weidman, J.M., Fujii, C., Bowman, C., Watthey, L., Wallin, E., Hayes, W.S., Borodovsky, M., Karp, P.D., Smith, H.O., Fraser, C.M., and Venter, J.C. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388: 539-547.
28. Van Bogelen, R.A., Abshire, K.Z., Pertsemlidis, A., Clark, R.L., and Neidhardt, F.C. (1996) Gene-protein database of Escherichia coli K-12, edition 6. In Escherichia coli and Salmonella: Cellular and Molecular Biology, 2nd edn. Neidhardt, F. (ed.). Washington DC: American Society for Microbiology Press, pp. 2067-2117.