메뉴 건너뛰기




Volumn 6, Issue 6, 2018, Pages

Laboratory methods in molecular epidemiology: Viral infections

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA; VIRUS RNA;

EID: 85055914438     PISSN: None     EISSN: 21650497     Source Type: Journal    
DOI: 10.1128/microbiolspec.AME-0003-2018     Document Type: Article
Times cited : (5)

References (182)
  • 2
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses-major players in the global ecosystem
    • Suttle CA. 2007. Marine viruses-major players in the global ecosystem. Nat Rev Microbiol 5:801-812. http://dx.doi.org/10.1038/nrmicro1750
    • (2007) Nat Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 3
    • 84857371051 scopus 로고    scopus 로고
    • Metagenomics and future perspectives in virus discovery
    • Mokili JL, Rohwer F, Dutilh BE. 2012. Metagenomics and future perspectives in virus discovery. Curr Opin Virol 2:63-77. http://dx.doi .org/10.1016/j.coviro.2011.12.004
    • (2012) Curr Opin Virol , vol.2 , pp. 63-77
    • Mokili, J.L.1    Rohwer, F.2    Dutilh, B.E.3
  • 4
    • 84939526110 scopus 로고    scopus 로고
    • Viral dark matter and virus-host interactions resolved from publicly available microbial genomes
    • Roux S, Hallam SJ, Woyke T, Sullivan MB. 2015. Viral dark matter and virus-host interactions resolved from publicly available microbial genomes. Elife 4:1-20. http://dx.doi.org/10.7554/eLife.08490
    • (2015) Elife , vol.4 , pp. 1-20
    • Roux, S.1    Hallam, S.J.2    Woyke, T.3    Sullivan, M.B.4
  • 6
    • 46749091188 scopus 로고    scopus 로고
    • End-point limiting-dilution real-time PCR assay for evaluation of hepatitis C virus quasispecies in serum: performance under optimal and suboptimal conditions
    • Ramachandran S, Xia GL, Ganova-Raeva LM, Nainan OV, Khudyakov Y. 2008. End-point limiting-dilution real-time PCR assay for evaluation of hepatitis C virus quasispecies in serum: performance under optimal and suboptimal conditions. J Virol Methods 151:217-224. http://dx.doi.org /10.1016/j.jviromet.2008.05.005
    • (2008) J Virol Methods , vol.151 , pp. 217-224
    • Ramachandran, S.1    Xia, G.L.2    Ganova-Raeva, L.M.3    Nainan, O.V.4    Khudyakov, Y.5
  • 8
    • 79960848222 scopus 로고    scopus 로고
    • Temporal variations in the hepatitis C virus intrahost population during chronic infection
    • Ramachandran S, Campo DS, Dimitrova ZE, Xia GL, Purdy MA, Khudyakov YE. 2011. Temporal variations in the hepatitis C virus intrahost population during chronic infection. J Virol 85:6369-6380. http://dx.doi.org /10.1128/JVI.02204-10
    • (2011) J Virol , vol.85 , pp. 6369-6380
    • Ramachandran, S.1    Campo, D.S.2    Dimitrova, Z.E.3    Xia, G.L.4    Purdy, M.A.5    Khudyakov, Y.E.6
  • 12
    • 84959184239 scopus 로고    scopus 로고
    • Emergence and development of H7N9 influenza viruses in China
    • Zhu H, Lam TTY, Smith DK, Guan Y. 2016. Emergence and development of H7N9 influenza viruses in China. Curr Opin Virol 16:106-113 http://dx.doi.org/10.1016/j.coviro.2016.01.020
    • (2016) Curr Opin Virol , vol.16 , pp. 106-113
    • Zhu, H.1    Lam, T.T.Y.2    Smith, D.K.3    Guan, Y.4
  • 13
    • 84961285054 scopus 로고    scopus 로고
    • Epidemiology, genetic recombination, and pathogenesis of coronaviruses
    • Su S, Wong G, Shi W, Liu J, Lai ACK, Zhou J, Liu W, Bi Y, Gao GF. 2016 Epidemiology, genetic recombination, and pathogenesis of coronaviruses. Trends Microbiol 24:490-502. http://dx.doi.org/10.1016/j.tim .2016.03.003
    • (2016) Trends Microbiol , vol.24 , pp. 490-502
    • Su, S.1    Wong, G.2    Shi, W.3    Liu, J.4    Lai, A.C.K.5    Zhou, J.6    Liu, W.7    Bi, Y.8    Gao, G.F.9
  • 15
  • 18
    • 84928112811 scopus 로고    scopus 로고
    • A systematic approach to novel virus discovery in emerging infectious disease outbreaks
    • Sridhar S, To KKW, Chan JFW, Lau SKP, Woo PCY, Yuen KY. 2015. A systematic approach to novel virus discovery in emerging infectious disease outbreaks. J Mol Diagn 17:230-241. http://dx.doi.org/10.1016/j .jmoldx.2014.12.002
    • (2015) J Mol Diagn , vol.17 , pp. 230-241
    • Sridhar, S.1    To, K.K.W.2    Chan, J.F.W.3    Lau, S.K.P.4    Woo, P.C.Y.5    Yuen, K.Y.6
  • 20
    • 82855177787 scopus 로고    scopus 로고
    • Metagenomics and the molecular identification of novel viruses
    • Bexfield N, Kellam P. 2011. Metagenomics and the molecular identification of novel viruses. Vet J 190:191-198. http://dx.doi.org/10.1016/j .tvjl.2010.10.014
    • (2011) Vet J , vol.190 , pp. 191-198
    • Bexfield, N.1    Kellam, P.2
  • 21
    • 84988349121 scopus 로고    scopus 로고
    • Next-generation sequencing in clinical virology: discovery of new viruses
    • Datta S, Budhauliya R, Das B, Chatterjee S, Vanlalhmuaka, Veer V. 2015 Next-generation sequencing in clinical virology: discovery of new viruses. World J Virol 4:265-276. http://dx.doi.org/10.5501/wjv.v4 .i3.265
    • (2015) World J Virol , vol.4 , pp. 265-276
    • Datta, S.1    Budhauliya, R.2    Das, B.3    Chatterjee, S.4    Vanlalhmuaka.5    Veer, V.6
  • 22
    • 65949108590 scopus 로고    scopus 로고
    • Metagenomic pyrosequencing and microbial identification
    • Petrosino JF, Highlander S, Luna RA, Gibbs RA, Versalovic J. 2009. Metagenomic pyrosequencing and microbial identification. Clin Chem 55:856-866. http://dx.doi.org/10.1373/clinchem.2008.107565
    • (2009) Clin Chem , vol.55 , pp. 856-866
    • Petrosino, J.F.1    Highlander, S.2    Luna, R.A.3    Gibbs, R.A.4    Versalovic, J.5
  • 23
    • 64749109065 scopus 로고    scopus 로고
    • Laboratory procedures to generate viral metagenomes
    • Thurber RV, Haynes M, Breitbart M, Wegley L, Rohwer F. 2009. Laboratory procedures to generate viral metagenomes. Nat Protoc 4:470-483 http://dx.doi.org/10.1038/nprot.2009.10
    • (2009) Nat Protoc , vol.4 , pp. 470-483
    • Thurber, R.V.1    Haynes, M.2    Breitbart, M.3    Wegley, L.4    Rohwer, F.5
  • 24
    • 13844266169 scopus 로고    scopus 로고
    • Characterization of virus isolates by particle-associated nucleic acid PCR
    • Stang A, Korn K, Wildner O, überla K. 2005. Characterization of virus isolates by particle-associated nucleic acid PCR. J Clin Microbiol 43:716-720. http://dx.doi.org/10.1128/JCM.43.2.716-720.2005
    • (2005) J Clin Microbiol , vol.43 , pp. 716-720
    • Stang, A.1    Korn, K.2    Wildner, O.3    Überla, K.4
  • 25
    • 33644873469 scopus 로고    scopus 로고
    • Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing
    • Breitbart M, Rohwer F. 2005. Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques 39:729-736. http://dx.doi.org/10.2144/000112019
    • (2005) Biotechniques , vol.39 , pp. 729-736
    • Breitbart, M.1    Rohwer, F.2
  • 26
    • 0025919217 scopus 로고
    • Use of ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton
    • Suttle CA, Chan AM, Cottrell MT. 1991. Use of ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton. Appl Environ Microbiol 57:721-726
    • (1991) Appl Environ Microbiol , vol.57 , pp. 721-726
    • Suttle, C.A.1    Chan, A.M.2    Cottrell, M.T.3
  • 27
    • 77951134860 scopus 로고    scopus 로고
    • Metagenomics for the discovery of novel human viruses
    • Tang P, Chiu C. 2010. Metagenomics for the discovery of novel human viruses. Future Microbiol 5:177-189. http://dx.doi.org/10.2217 /fmb.09.120
    • (2010) Future Microbiol , vol.5 , pp. 177-189
    • Tang, P.1    Chiu, C.2
  • 28
    • 77957931143 scopus 로고    scopus 로고
    • DNA viruses: the really big ones (giruses)
    • Van Etten JL, Lane LC, Dunigan DD. 2010. DNA viruses: the really big ones (giruses). Annu Rev Microbiol 64:83-99. http://dx.doi.org/10 .1146/annurev.micro.112408.134338
    • (2010) Annu Rev Microbiol , vol.64 , pp. 83-99
    • Van Etten, J.L.1    Lane, L.C.2    Dunigan, D.D.3
  • 32
    • 33751098497 scopus 로고    scopus 로고
    • Virus discovery by sequenceindependent genome amplification
    • Ambrose HE, Clewley JP. 2006. Virus discovery by sequenceindependent genome amplification. Rev Med Virol 16:365-383. http://dx .doi.org/10.1002/rmv.515
    • (2006) Rev Med Virol , vol.16 , pp. 365-383
    • Ambrose, H.E.1    Clewley, J.P.2
  • 33
    • 84902526814 scopus 로고    scopus 로고
    • Accurate viral population assembly from ultra-deep sequencing data
    • Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. 2014 Accurate viral population assembly from ultra-deep sequencing data. Bioinformatics 30:i329-i337. http://dx.doi.org/10.1093/bioinformatics /btu295
    • (2014) Bioinformatics , vol.30 , pp. i329-i337
    • Mangul, S.1    Wu, N.C.2    Mancuso, N.3    Zelikovsky, A.4    Sun, R.5    Eskin, E.6
  • 34
    • 84867397631 scopus 로고    scopus 로고
    • MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
    • Namiki T, Hachiya T, Tanaka H, Sakakibara Y. 2012. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. Nucleic Acids Res 40:e155. http://dx.doi.org/10 .1093/nar/gks678
    • (2012) Nucleic Acids Res , vol.40 , pp. e155
    • Namiki, T.1    Hachiya, T.2    Tanaka, H.3    Sakakibara, Y.4
  • 35
    • 0024509701 scopus 로고
    • Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
    • Choo QL, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M. 1989 Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359-362. http://dx.doi.org /10.1126/science.2523562
    • (1989) Science , vol.244 , pp. 359-362
    • Choo, Q.L.1    Kuo, G.2    Weiner, A.J.3    Overby, L.R.4    Bradley, D.W.5    Houghton, M.6
  • 36
    • 70449112966 scopus 로고    scopus 로고
    • Basic concepts of microarrays and potential applications in clinical microbiology
    • Miller MB, Tang YW. 2009. Basic concepts of microarrays and potential applications in clinical microbiology. Clin Microbiol Rev 22: 611-633. http://dx.doi.org/10.1128/CMR.00019-09
    • (2009) Clin Microbiol Rev , vol.22 , pp. 611-633
    • Miller, M.B.1    Tang, Y.W.2
  • 39
    • 84930087989 scopus 로고    scopus 로고
    • Microarraybased genotyping and detection of drug-resistant HBV mutations from 620 Chinese patients with chronic HBV infection
    • Hua W, Zhang G, Guo S, Li W, Sun L, Xiang G. 2015. Microarraybased genotyping and detection of drug-resistant HBV mutations from 620 Chinese patients with chronic HBV infection. Braz J Infect Dis 19:291-295. http://dx.doi.org/10.1016/j.bjid.2015.03.012
    • (2015) Braz J Infect Dis , vol.19 , pp. 291-295
    • Hua, W.1    Zhang, G.2    Guo, S.3    Li, W.4    Sun, L.5    Xiang, G.6
  • 40
    • 84924765083 scopus 로고    scopus 로고
    • Development of a single nucleotide polymorphism DNA microarray for the detection and genotyping of the SARS coronavirus
    • Guo X, Geng P, Wang Q, Cao B, Liu B. 2014. Development of a single nucleotide polymorphism DNA microarray for the detection and genotyping of the SARS coronavirus. J Microbiol Biotechnol 24:1445-1454. http://dx.doi.org/10.4014/jmb.1404.04024
    • (2014) J Microbiol Biotechnol , vol.24 , pp. 1445-1454
    • Guo, X.1    Geng, P.2    Wang, Q.3    Cao, B.4    Liu, B.5
  • 43
    • 34548514438 scopus 로고    scopus 로고
    • Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity
    • Kistler A, Avila PC, Rouskin S, Wang D, Ward T, Yagi S, Schnurr D, Ganem D, DeRisi JL, Boushey HA. 2007. Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. J Infect Dis 196:817-825 http://dx.doi.org/10.1086/520816
    • (2007) J Infect Dis , vol.196 , pp. 817-825
    • Kistler, A.1    Avila, P.C.2    Rouskin, S.3    Wang, D.4    Ward, T.5    Yagi, S.6    Schnurr, D.7    Ganem, D.8    DeRisi, J.L.9    Boushey, H.A.10
  • 45
    • 1842376876 scopus 로고    scopus 로고
    • Amplification and subtraction methods and their application to the discovery of novel human viruses
    • Muerhoff AS, Leary TP, Desai SM, Mushahwar IK. 1997. Amplification and subtraction methods and their application to the discovery of novel human viruses. J Med Virol 53:96-103. http://dx.doi.org/10.1002 /(SICI)1096-9071(199709)53:1<96::AID-JMV16>3.0.CO;2-V
    • (1997) J Med Virol , vol.53 , pp. 96-103
    • Muerhoff, A.S.1    Leary, T.P.2    Desai, S.M.3    Mushahwar, I.K.4
  • 46
    • 0027468779 scopus 로고
    • Cloning the differences between two genomes
    • Lisitsyn NA, Lisitsyn NM, Wigler M. 1993. Cloning the differences between two genomes. Science 259:946-951
    • (1993) Science , vol.259 , pp. 946-951
    • Lisitsyn, N.A.1    Lisitsyn, N.M.2    Wigler, M.3
  • 47
    • 0028588064 scopus 로고
    • Identification of herpesvirus-like DNA sequences in AIDS-associated Kaposi's sarcoma
    • Chang Y, Cesarman E, Pessin MS, Lee F, Culpepper J, Knowles DM, Moore PS. 1994. Identification of herpesvirus-like DNA sequences in AIDS-associated Kaposi's sarcoma. Science 266:1865-1869. http://dx .doi.org/10.1126/science.7997879
    • (1994) Science , vol.266 , pp. 1865-1869
    • Chang, Y.1    Cesarman, E.2    Pessin, M.S.3    Lee, F.4    Culpepper, J.5    Knowles, D.M.6    Moore, P.S.7
  • 48
    • 0036479008 scopus 로고    scopus 로고
    • Identification of foreign gene sequences by transcript filtering against the human genome
    • Weber G, Shendure J, Tanenbaum DM, Church GM, Meyerson M. 2002 Identification of foreign gene sequences by transcript filtering against the human genome. Nat Genet 30:141-142. http://dx.doi.org/10 .1038/ng818
    • (2002) Nat Genet , vol.30 , pp. 141-142
    • Weber, G.1    Shendure, J.2    Tanenbaum, D.M.3    Church, G.M.4    Meyerson, M.5
  • 49
    • 84973483876 scopus 로고    scopus 로고
    • Strategies for human tumor virus discoveries: from microscopic observation to digital transcriptome subtraction
    • Mirvish ED, Shuda M. 2016. Strategies for human tumor virus discoveries: from microscopic observation to digital transcriptome subtraction. Front Microbiol 7:676. http://dx.doi.org/10.3389/fmicb.2016 .00676
    • (2016) Front Microbiol , vol.7 , pp. 676
    • Mirvish, E.D.1    Shuda, M.2
  • 50
    • 39749113080 scopus 로고    scopus 로고
    • Clonal integration of a polyomavirus in human Merkel cell carcinoma
    • Feng H, Shuda M, Chang Y, Moore PS. 2008. Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319:1096-1100
    • (2008) Science , vol.319 , pp. 1096-1100
    • Feng, H.1    Shuda, M.2    Chang, Y.3    Moore, P.S.4
  • 51
    • 35148898713 scopus 로고    scopus 로고
    • Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma
    • Feng H, Taylor JL, Benos PV, Newton R, Waddell K, Lucas SB, Chang Y, Moore PS. 2007. Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma. J Virol 81:11332-11340
    • (2007) J Virol , vol.81 , pp. 11332-11340
    • Feng, H.1    Taylor, J.L.2    Benos, P.V.3    Newton, R.4    Waddell, K.5    Lucas, S.B.6    Chang, Y.7    Moore, P.S.8
  • 53
    • 53049086506 scopus 로고    scopus 로고
    • Quantitative PCR measurements of the effects of introducing inosines into primers provides guidelines for improved degenerate primer design
    • Zheng L, Gibbs MJ, Rodoni BC. 2008. Quantitative PCR measurements of the effects of introducing inosines into primers provides guidelines for improved degenerate primer design. J Virol Methods 153:97-103. http://dx.doi.org/10.1016/j.jviromet.2008.07.029
    • (2008) J Virol Methods , vol.153 , pp. 97-103
    • Zheng, L.1    Gibbs, M.J.2    Rodoni, B.C.3
  • 54
    • 0043122986 scopus 로고    scopus 로고
    • CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design
    • Rose TM, Henikoff JG, Henikoff S. 2003. CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design. Nucleic Acids Res 31:3763-3766. http://dx.doi.org/10.1093/nar/gkg524
    • (2003) Nucleic Acids Res , vol.31 , pp. 3763-3766
    • Rose, T.M.1    Henikoff, J.G.2    Henikoff, S.3
  • 55
    • 0032052770 scopus 로고    scopus 로고
    • Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences
    • Rose TM, Schultz ER, Henikoff JG, Pietrokovski S, McCallum CM, Henikoff S. 1998. Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. Nucleic Acids Res 26:1628-1635. http://dx.doi.org/10.1093/nar/26.7.1628
    • (1998) Nucleic Acids Res , vol.26 , pp. 1628-1635
    • Rose, T.M.1    Schultz, E.R.2    Henikoff, J.G.3    Pietrokovski, S.4    McCallum, C.M.5    Henikoff, S.6
  • 58
    • 80053133646 scopus 로고    scopus 로고
    • Design and validation of consensus-degenerate hybrid oligonucleotide primers for broad and sensitive detection of corona-and toroviruses
    • Zlateva KT, Crusio KM, Leontovich AM, Lauber C, Claas E, Kravchenko AA, Spaan WJM, Gorbalenya AE. 2011. Design and validation of consensus-degenerate hybrid oligonucleotide primers for broad and sensitive detection of corona-and toroviruses. J Virol Methods 177:174-183. http://dx.doi.org/10.1016/j.jviromet.2011.08.005
    • (2011) J Virol Methods , vol.177 , pp. 174-183
    • Zlateva, K.T.1    Crusio, K.M.2    Leontovich, A.M.3    Lauber, C.4    Claas, E.5    Kravchenko, A.A.6    Spaan, W.J.M.7    Gorbalenya, A.E.8
  • 60
    • 84919458576 scopus 로고    scopus 로고
    • Comprehensive molecular detection of tick-borne phleboviruses leads to the retrospective identification of taxonomically unassigned bunyaviruses and the discovery of a novel member of the genus phlebovirus
    • Matsuno K, Weisend C, Kajihara M, Matysiak C, Williamson BN, Simuunza M, Mweene AS, Takada A, Tesh RB, Ebihara H. 2015. Comprehensive molecular detection of tick-borne phleboviruses leads to the retrospective identification of taxonomically unassigned bunyaviruses and the discovery of a novel member of the genus phlebovirus. J Virol 89:594-604. http://dx.doi.org/10.1128/JVI.02704-14
    • (2015) J Virol , vol.89 , pp. 594-604
    • Matsuno, K.1    Weisend, C.2    Kajihara, M.3    Matysiak, C.4    Williamson, B.N.5    Simuunza, M.6    Mweene, A.S.7    Takada, A.8    Tesh, R.B.9    Ebihara, H.10
  • 63
    • 85042628870 scopus 로고    scopus 로고
    • Evaluation of a new multiplex real-time PCR assay for detecting gastroenteritis-causing viruses in stool samples
    • Hyun J, Ko DH, Lee SK, Kim HS, Kim JS, Song W, Kim HS. 2018. Evaluation of a new multiplex real-time PCR assay for detecting gastroenteritis-causing viruses in stool samples. Ann Lab Med 38:220-225
    • (2018) Ann Lab Med , vol.38 , pp. 220-225
    • Hyun, J.1    Ko, D.H.2    Lee, S.K.3    Kim, H.S.4    Kim, J.S.5    Song, W.6    Kim, H.S.7
  • 64
    • 85042236047 scopus 로고    scopus 로고
    • Establishment of a multiplex real-time RT-PCR assay for rapid identification of H6 subtype avian influenza viruses
    • Yang F, Wu H, Liu F, Lu X, Peng X, Wu N. 2018. Establishment of a multiplex real-time RT-PCR assay for rapid identification of H6 subtype avian influenza viruses. Arch Virol 163:1671-1675. http://dx.doi.org/10 .1007/s00705-018-3773-2
    • (2018) Arch Virol , vol.163 , pp. 1671-1675
    • Yang, F.1    Wu, H.2    Liu, F.3    Lu, X.4    Peng, X.5    Wu, N.6
  • 65
    • 77955094384 scopus 로고    scopus 로고
    • Detection of pandemic influenza A H1N1 virus by multiplex reverse transcription-PCR with a GeXP analyzer
    • Qin M, Wang DY, Huang F, Nie K, Qu M, Wang M, Shu YL, Ma XJ. 2010 Detection of pandemic influenza A H1N1 virus by multiplex reverse transcription-PCR with a GeXP analyzer. J Virol Methods 168:255-258. http://dx.doi.org/10.1016/j.jviromet.2010.04.031
    • (2010) J Virol Methods , vol.168 , pp. 255-258
    • Qin, M.1    Wang, D.Y.2    Huang, F.3    Nie, K.4    Qu, M.5    Wang, M.6    Shu, Y.L.7    Ma, X.J.8
  • 68
    • 0037131204 scopus 로고    scopus 로고
    • Detection of HIV-1 subtypes, recombinants, and dual infections in east Africa by a multi-region hybridization assay
    • Hoelscher M, Dowling WE, Sanders-Buell E, Carr JK, Harris ME, Thomschke A, Robb ML, Birx DL, McCutchan FE. 2002. Detection of HIV-1 subtypes, recombinants, and dual infections in east Africa by a multi-region hybridization assay. AIDS 16:2055-2064. http://dx.doi.org /10.1097/00002030-200210180-00011
    • (2002) AIDS , vol.16 , pp. 2055-2064
    • Hoelscher, M.1    Dowling, W.E.2    Sanders-Buell, E.3    Carr, J.K.4    Harris, M.E.5    Thomschke, A.6    Robb, M.L.7    Birx, D.L.8    McCutchan, F.E.9
  • 70
    • 84872931609 scopus 로고    scopus 로고
    • Novel multiregion hybridization assay for the identification of the most prevalent genetic forms of the human immunodeficiency virus type 1 circulating in Portugal
    • Freitas FB, Esteves A, Piedade J, Parreira R. 2013. Novel multiregion hybridization assay for the identification of the most prevalent genetic forms of the human immunodeficiency virus type 1 circulating in Portugal. AIDS Res Hum Retroviruses 29:318-328
    • (2013) AIDS Res Hum Retroviruses , vol.29 , pp. 318-328
    • Freitas, F.B.1    Esteves, A.2    Piedade, J.3    Parreira, R.4
  • 71
    • 84871899499 scopus 로고    scopus 로고
    • A novel multiregion hybridization assay reveals high frequency of dual inter-subtype infections among HIV-positive individuals in Cameroon, West Central Africa
    • Vidal N, Diop H, Montavon C, Butel C, Bosch S, Ngole EM, Touré-Kane C, Mboup S, Delaporte E, Peeters M. 2013. A novel multiregion hybridization assay reveals high frequency of dual inter-subtype infections among HIV-positive individuals in Cameroon, West Central Africa. Infect Genet Evol 14:73-82. http://dx.doi.org/10.1016/j.meegid.2012.11.017
    • (2013) Infect Genet Evol , vol.14 , pp. 73-82
    • Vidal, N.1    Diop, H.2    Montavon, C.3    Butel, C.4    Bosch, S.5    Ngole, E.M.6    Touré-Kane, C.7    Mboup, S.8    Delaporte, E.9    Peeters, M.10
  • 73
    • 0036182163 scopus 로고    scopus 로고
    • Characteristics and applications of nucleic acid sequence-based amplification (NASBA)
    • Deiman B, van Aarle P, Sillekens P. 2002. Characteristics and applications of nucleic acid sequence-based amplification (NASBA). Mol Biotechnol 20:163-179. http://dx.doi.org/10.1385/MB:20:2:163
    • (2002) Mol Biotechnol , vol.20 , pp. 163-179
    • Deiman, B.1    van Aarle, P.2    Sillekens, P.3
  • 74
    • 84900474486 scopus 로고    scopus 로고
    • Detection of high-risk human papillomavirus type 16 and 18 using isothermal helicasedependent amplification
    • Barbieri D, Venturoli S, Rösl F, Rincon-Orozco B. 2014. Detection of high-risk human papillomavirus type 16 and 18 using isothermal helicasedependent amplification. Diagn Microbiol Infect Dis 79:178-182. http:// dx.doi.org/10.1016/j.diagmicrobio.2014.02.012
    • (2014) Diagn Microbiol Infect Dis , vol.79 , pp. 178-182
    • Barbieri, D.1    Venturoli, S.2    Rösl, F.3    Rincon-Orozco, B.4
  • 75
    • 84867380725 scopus 로고    scopus 로고
    • Development and comparison of a rapid isothermal nucleic acid amplification test for typing of herpes simplex virus types 1 and 2 on a portable fluorescence detector
    • Tong Y, McCarthy K, Kong H, Lemieux B. 2012. Development and comparison of a rapid isothermal nucleic acid amplification test for typing of herpes simplex virus types 1 and 2 on a portable fluorescence detector. JMolDiagn 14:569-576. http://dx.doi.org/10.1016/j.jmoldx.2012.05.005
    • (2012) JMolDiagn , vol.14 , pp. 569-576
    • Tong, Y.1    McCarthy, K.2    Kong, H.3    Lemieux, B.4
  • 77
    • 85032618818 scopus 로고    scopus 로고
    • A recombinase polymerase amplification assay for rapid detection of Crimean-Congo haemorrhagic fever virus infection
    • Bonney LC, Watson RJ, Afrough B, Mullojonova M, Dzhuraeva V, Tishkova F, Hewson R. 2017. A recombinase polymerase amplification assay for rapid detection of Crimean-Congo haemorrhagic fever virus infection. PLoS Negl Trop Dis 11:e0006013. http://dx.doi.org/10.1371 /journal.pntd.0006013
    • (2017) PLoS Negl Trop Dis , vol.11
    • Bonney, L.C.1    Watson, R.J.2    Afrough, B.3    Mullojonova, M.4    Dzhuraeva, V.5    Tishkova, F.6    Hewson, R.7
  • 78
    • 84938718993 scopus 로고    scopus 로고
    • Development of reverse transcription recombinase polymerase amplification assay for avian influenza H5N1 HA gene detection
    • Yehia N, Arafa AS, Abd El Wahed A, El-Sanousi AA, Weidmann M, Shalaby MA. 2015. Development of reverse transcription recombinase polymerase amplification assay for avian influenza H5N1 HA gene detection. J Virol Methods 223:45-49. http://dx.doi.org/10.1016/j.jviromet .2015.07.011
    • (2015) J Virol Methods , vol.223 , pp. 45-49
    • Yehia, N.1    Arafa, A.S.2    Abd El Wahed, A.3    El-Sanousi, A.A.4    Weidmann, M.5    Shalaby, M.A.6
  • 80
    • 84942295554 scopus 로고    scopus 로고
    • Reverse transcription recombinase polymerase amplification assay for the detection of Middle East respiratory syndrome coronavirus
    • Abd El Wahed A, Patel P, Heidenreich D, Hufert FT, Weidmann M. 2013 Reverse transcription recombinase polymerase amplification assay for the detection of Middle East respiratory syndrome coronavirus. PLoS Curr 5:ecurrents.outbreaks.62df1c7c75ffc96cd59034531e2e8364
    • (2013) PLoS Curr , vol.5
    • Abd El Wahed, A.1    Patel, P.2    Heidenreich, D.3    Hufert, F.T.4    Weidmann, M.5
  • 81
    • 84934922809 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects
    • Notomi T, Mori Y, Tomita N, Kanda H. 2015. Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects. J Microbiol 53:1-5. http://dx.doi.org/10.1007/s12275-015-4656-9
    • (2015) J Microbiol , vol.53 , pp. 1-5
    • Notomi, T.1    Mori, Y.2    Tomita, N.3    Kanda, H.4
  • 82
    • 84856970409 scopus 로고    scopus 로고
    • Detection of human enterovirus 71 reverse transcription loop-mediated isothermal amplification (RT-LAMP)
    • Yaqing H, Wenping Z, Zhiyi Y, Xionghu W, Shouyi Y, Hong Y, Yingchun D, Guifang H. 2012. Detection of human enterovirus 71 reverse transcription loop-mediated isothermal amplification (RT-LAMP). Lett Appl Microbiol 54:233-239. http://dx.doi.org/10.1111/j.1472-765X .2011.03198.x
    • (2012) Lett Appl Microbiol , vol.54 , pp. 233-239
    • Yaqing, H.1    Wenping, Z.2    Zhiyi, Y.3    Xionghu, W.4    Shouyi, Y.5    Hong, Y.6    Yingchun, D.7    Guifang, H.8
  • 83
    • 85018485320 scopus 로고    scopus 로고
    • Rapid detection of all known ebolavirus species by reverse transcriptionloop-mediated isothermal amplification (RT-LAMP)
    • Oloniniyi OK, Kurosaki Y, Miyamoto H, Takada A, Yasuda J. 2017. Rapid detection of all known ebolavirus species by reverse transcriptionloop-mediated isothermal amplification (RT-LAMP). J Virol Methods 246:8-14. http://dx.doi.org/10.1016/j.jviromet.2017.03.011
    • (2017) J Virol Methods , vol.246 , pp. 8-14
    • Oloniniyi, O.K.1    Kurosaki, Y.2    Miyamoto, H.3    Takada, A.4    Yasuda, J.5
  • 84
    • 84899831457 scopus 로고    scopus 로고
    • Development of a reverse transcription loop-mediated isothermal amplification assay for the rapid diagnosis of avian influenza A (H7N9) virus infection
    • Nakauchi M, Takayama I, Takahashi H, Tashiro M, Kageyama T. 2014 Development of a reverse transcription loop-mediated isothermal amplification assay for the rapid diagnosis of avian influenza A (H7N9) virus infection. J Virol Methods 204:101-104. http://dx.doi.org/10.1016 /j.jviromet.2014.03.028
    • (2014) J Virol Methods , vol.204 , pp. 101-104
    • Nakauchi, M.1    Takayama, I.2    Takahashi, H.3    Tashiro, M.4    Kageyama, T.5
  • 86
    • 85041846762 scopus 로고    scopus 로고
    • Assessing the performance of a loop mediated isothermal amplification (LAMP) assay for the detection and subtyping of high-risk suptypes [sic] of human papilloma virus (HPV) for oropharyngeal squamous cell carcinoma (OPSCC) without DNA purification
    • Rohatensky MG, Livingstone DM, Mintchev P, Barnes HK, Nakoneshny SC, Demetrick DJ, Dort JC, van Marle G. 2018. Assessing the performance of a loop mediated isothermal amplification (LAMP) assay for the detection and subtyping of high-risk suptypes [sic] of human papilloma virus (HPV) for oropharyngeal squamous cell carcinoma (OPSCC) without DNA purification. BMC Cancer 18:166. http://dx.doi .org/10.1186/s12885-018-4087-1
    • (2018) BMC Cancer , vol.18 , pp. 166
    • Rohatensky, M.G.1    Livingstone, D.M.2    Mintchev, P.3    Barnes, H.K.4    Nakoneshny, S.C.5    Demetrick, D.J.6    Dort, J.C.7    van Marle, G.8
  • 87
  • 88
    • 84938690461 scopus 로고    scopus 로고
    • Development and evaluation of a loop-mediated isothermal amplification assay for the detection of adenovirus 40 and 41
    • Ziros PG, Kokkinos PA, Allard A, Vantarakis A. 2015. Development and evaluation of a loop-mediated isothermal amplification assay for the detection of adenovirus 40 and 41. Food Environ Virol 7:276-285. http:// dx.doi.org/10.1007/s12560-015-9182-8
    • (2015) Food Environ Virol , vol.7 , pp. 276-285
    • Ziros, P.G.1    Kokkinos, P.A.2    Allard, A.3    Vantarakis, A.4
  • 89
    • 0026290379 scopus 로고
    • Sequence-independent, single-primer amplification (SISPA) of complex DNA populations
    • Reyes GR, Kim JP. 1991. Sequence-independent, single-primer amplification (SISPA) of complex DNA populations. Mol Cell Probes 5:473-481 http://dx.doi.org/10.1016/S0890-8508(05)80020-9
    • (1991) Mol Cell Probes , vol.5 , pp. 473-481
    • Reyes, G.R.1    Kim, J.P.2
  • 90
    • 0026590701 scopus 로고
    • Cloning of noncultivatable human rotavirus by single primer amplification
    • Lambden PR, Cooke SJ, Caul EO, Clarke IN. 1992. Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66:1817-1822
    • (1992) J Virol , vol.66 , pp. 1817-1822
    • Lambden, P.R.1    Cooke, S.J.2    Caul, E.O.3    Clarke, I.N.4
  • 94
    • 41149110926 scopus 로고    scopus 로고
    • Identification of a contemporary human parechovirus type 1 by VIDISCA and characterisation of its full genome
    • de Souza Luna LK, Baumgarte S, Grywna K, Panning M, Drexler JF, Drosten C. 2008. Identification of a contemporary human parechovirus type 1 by VIDISCA and characterisation of its full genome. Virol J 5:26. http://dx.doi.org/10.1186/1743-422X-5-26
    • (2008) Virol J , vol.5 , pp. 26
    • de Souza Luna, L.K.1    Baumgarte, S.2    Grywna, K.3    Panning, M.4    Drexler, J.F.5    Drosten, C.6
  • 95
    • 83155190998 scopus 로고    scopus 로고
    • Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses
    • Kim KH, Bae JW. 2011. Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses. Appl Environ Microbiol 77:7663-7668. http://dx.doi.org/10.1128/AEM .00289-11
    • (2011) Appl Environ Microbiol , vol.77 , pp. 7663-7668
    • Kim, K.H.1    Bae, J.W.2
  • 96
    • 84884625714 scopus 로고    scopus 로고
    • The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing
    • Rosseel T, Van Borm S, Vandenbussche F, Hoffmann B, van den Berg T, Beer M, Höper D. 2013. The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing. PLoS One 8:e76144. http://dx.doi .org/10.1371/journal.pone.0076144
    • (2013) PLoS One , vol.8
    • Rosseel, T.1    Van Borm, S.2    Vandenbussche, F.3    Hoffmann, B.4    van den Berg, T.5    Beer, M.6    Höper, D.7
  • 97
    • 84883207705 scopus 로고    scopus 로고
    • The effect of preprocessing by sequence-independent, single-primer amplification (SISPA) on metagenomic detection of viruses
    • Karlsson OE, Belák S, Granberg F. 2013. The effect of preprocessing by sequence-independent, single-primer amplification (SISPA) on metagenomic detection of viruses. Biosecur Bioterror 11(Suppl 1):S227-S234. http://dx.doi.org/10.1089/bsp.2013.0008
    • (2013) Biosecur Bioterror , vol.11 , pp. S227-S234
    • Karlsson, O.E.1    Belák, S.2    Granberg, F.3
  • 98
    • 28644451508 scopus 로고    scopus 로고
    • Species-independent detection of RNA virus by representational difference analysis using non-ribosomal hexanucleotides for reverse transcription
    • Endoh D, Mizutani T, Kirisawa R, Maki Y, Saito H, Kon Y, Morikawa S, Hayashi M. 2005. Species-independent detection of RNA virus by representational difference analysis using non-ribosomal hexanucleotides for reverse transcription. Nucleic Acids Res 33:e65. http://dx .doi.org/10.1093/nar/gni064
    • (2005) Nucleic Acids Res , vol.33 , pp. e65
    • Endoh, D.1    Mizutani, T.2    Kirisawa, R.3    Maki, Y.4    Saito, H.5    Kon, Y.6    Morikawa, S.7    Hayashi, M.8
  • 100
    • 0026704614 scopus 로고
    • A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA
    • Froussard P. 1992. A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acids Res 20:2900. http://dx.doi.org/10.1093/nar/20.11.2900
    • (1992) Nucleic Acids Res , vol.20 , pp. 2900
    • Froussard, P.1
  • 105
    • 70350515938 scopus 로고    scopus 로고
    • Identification of a novel human gammapapillomavirus species
    • Li L, Barry P, Yeh E, Glaser C, Schnurr D, Delwart E. 2009. Identification of a novel human gammapapillomavirus species. J Gen Virol 90:2413-2417. http://dx.doi.org/10.1099/vir.0.012344-0
    • (2009) J Gen Virol , vol.90 , pp. 2413-2417
    • Li, L.1    Barry, P.2    Yeh, E.3    Glaser, C.4    Schnurr, D.5    Delwart, E.6
  • 109
    • 84859474927 scopus 로고    scopus 로고
    • Random amplification and pyrosequencing for identification of novel viral genome sequences
    • Hang J, Forshey BM, Kochel TJ, Li T, Solórzano VF, Halsey ES, Kuschner RA. 2012. Random amplification and pyrosequencing for identification of novel viral genome sequences. J Biomol Tech 23:4-10. http://dx.doi.org/10.7171/jbt.12-2301-001
    • (2012) J Biomol Tech , vol.23 , pp. 4-10
    • Hang, J.1    Forshey, B.M.2    Kochel, T.J.3    Li, T.4    Solórzano, V.F.5    Halsey, E.S.6    Kuschner, R.A.7
  • 110
    • 84896135282 scopus 로고    scopus 로고
    • Simultaneous rapid sequencing of multiple RNA virus genomes
    • Neill JD, Bayles DO, Ridpath JF. 2014. Simultaneous rapid sequencing of multiple RNA virus genomes. J Virol Methods 201:68-72. http://dx.doi.org/10.1016/j.jviromet.2014.02.016
    • (2014) J Virol Methods , vol.201 , pp. 68-72
    • Neill, J.D.1    Bayles, D.O.2    Ridpath, J.F.3
  • 111
    • 65449151413 scopus 로고    scopus 로고
    • Rolling-circle amplification of viral DNA genomes using phi29 polymerase
    • Johne R, Müller H, Rector A, van Ranst M, Stevens H. 2009. Rolling-circle amplification of viral DNA genomes using phi29 polymerase. Trends Microbiol 17:205-211. http://dx.doi.org/10.1016/j.tim.2009 .02.004
    • (2009) Trends Microbiol , vol.17 , pp. 205-211
    • Johne, R.1    Müller, H.2    Rector, A.3    van Ranst, M.4    Stevens, H.5
  • 112
    • 84934435503 scopus 로고    scopus 로고
    • Whole genome amplification with Phi29 DNA polymerase to enable genetic or genomic analysis of samples of low DNA yield
    • Silander K, Saarela J. 2008. Whole genome amplification with Phi29 DNA polymerase to enable genetic or genomic analysis of samples of low DNA yield. Methods Mol Biol 439:1-18. http://dx.doi.org/10.1007/978-1-59745-188-8_1
    • (2008) Methods Mol Biol , vol.439 , pp. 1-18
    • Silander, K.1    Saarela, J.2
  • 115
    • 2342599124 scopus 로고    scopus 로고
    • A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification
    • Rector A, Tachezy R, Van Ranst M. 2004. A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification. J Virol 78:4993-4998. http:// dx.doi.org/10.1128/JVI.78.10.4993-4998.2004
    • (2004) J Virol , vol.78 , pp. 4993-4998
    • Rector, A.1    Tachezy, R.2    Van Ranst, M.3
  • 116
    • 79955752559 scopus 로고    scopus 로고
    • Possible cross-species transmission of circoviruses and cycloviruses among farm animals
    • Li L, Shan T, Soji OB, Alam MM, Kunz TH, Zaidi SZ, Delwart E. 2011 Possible cross-species transmission of circoviruses and cycloviruses among farm animals. J Gen Virol 92:768-772. http://dx.doi.org/10.1099 /vir.0.028704-0
    • (2011) J Gen Virol , vol.92 , pp. 768-772
    • Li, L.1    Shan, T.2    Soji, O.B.3    Alam, M.M.4    Kunz, T.H.5    Zaidi, S.Z.6    Delwart, E.7
  • 117
    • 84923635622 scopus 로고    scopus 로고
    • Specific rolling circle amplification of low-copy human polyomaviruses BKV, HPyV6, HPyV7, TSPyV, and STLPyV
    • Rockett R, Barraclough KA, Isbel NM, Dudley KJ, Nissen MD, Sloots TP, Bialasiewicz S. 2015. Specific rolling circle amplification of low-copy human polyomaviruses BKV, HPyV6, HPyV7, TSPyV, and STLPyV. J Virol Methods 215-216:17-21. http://dx.doi.org/10.1016/j .jviromet.2015.02.004
    • (2015) J Virol Methods , vol.215-216 , pp. 17-21
    • Rockett, R.1    Barraclough, K.A.2    Isbel, N.M.3    Dudley, K.J.4    Nissen, M.D.5    Sloots, T.P.6    Bialasiewicz, S.7
  • 118
    • 80052138867 scopus 로고    scopus 로고
    • A novel rolling circle amplification assay to detect members of the family Anelloviridae in pigs and humans
    • Macera L, Cortey M, Maggi F, Segalés J, Kekarainen T. 2011. A novel rolling circle amplification assay to detect members of the family Anelloviridae in pigs and humans. Virus Res 160:424-427. http://dx.doi .org/10.1016/j.virusres.2011.06.025
    • (2011) Virus Res , vol.160 , pp. 424-427
    • Macera, L.1    Cortey, M.2    Maggi, F.3    Segalés, J.4    Kekarainen, T.5
  • 119
    • 84924287298 scopus 로고    scopus 로고
    • A novel method for detection of HBVcccDNA in hepatocytes using rolling circle amplification combined with in situ PCR
    • Zhong Y, Hu S, Xu C, Zhao Y, Xu D, Zhao Y, Zhao J, Li Z, Zhang X, Zhang H, Li J. 2014. A novel method for detection of HBVcccDNA in hepatocytes using rolling circle amplification combined with in situ PCR. BMC Infect Dis 14:608. http://dx.doi.org/10.1186/s12879-014-0608-y
    • (2014) BMC Infect Dis , vol.14 , pp. 608
    • Zhong, Y.1    Hu, S.2    Xu, C.3    Zhao, Y.4    Xu, D.5    Zhao, Y.6    Zhao, J.7    Li, Z.8    Zhang, X.9    Zhang, H.10    Li, J.11
  • 120
    • 84940941884 scopus 로고    scopus 로고
    • MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis
    • Singhal N, Kumar M, Kanaujia PK, Virdi JS. 2015. MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis. Front Microbiol 6:791. http://dx.doi.org/10.3389/fmicb .2015.00791
    • (2015) Front Microbiol , vol.6 , pp. 791
    • Singhal, N.1    Kumar, M.2    Kanaujia, P.K.3    Virdi, J.S.4
  • 121
    • 66149141008 scopus 로고    scopus 로고
    • Subtyping of the influenza virus by high resolution mass spectrometry
    • Schwahn AB, Wong JW, Downard KM. 2009. Subtyping of the influenza virus by high resolution mass spectrometry. Anal Chem 81: 3500-3506. http://dx.doi.org/10.1021/ac900026f
    • (2009) Anal Chem , vol.81 , pp. 3500-3506
    • Schwahn, A.B.1    Wong, J.W.2    Downard, K.M.3
  • 122
    • 84886528399 scopus 로고    scopus 로고
    • Proteotyping for the rapid identification of influenza virus and other biopathogens
    • Downard KM. 2013. Proteotyping for the rapid identification of influenza virus and other biopathogens. Chem Soc Rev 42:8584-8595. http://dx.doi.org/10.1039/c3cs60081e
    • (2013) Chem Soc Rev , vol.42 , pp. 8584-8595
    • Downard, K.M.1
  • 126
    • 84994633874 scopus 로고    scopus 로고
    • Detection of HPV subtypes by mass spectrometry in FFPE tissue specimens: a reliable tool for routine diagnostics
    • KriegsmannM, Wandernoth P, Lisenko K, Casadonte R, Longuespée R, Arens N, Kriegsmann J. 2017. Detection of HPV subtypes by mass spectrometry in FFPE tissue specimens: a reliable tool for routine diagnostics. J Clin Pathol 70:417-423. http://dx.doi.org/10.1136/jclinpath-2016-204017
    • (2017) J Clin Pathol , vol.70 , pp. 417-423
    • Kriegsmann, M.1    Wandernoth, P.2    Lisenko, K.3    Casadonte, R.4    Longuespée, R.5    Arens, N.6    Kriegsmann, J.7
  • 128
    • 84994000091 scopus 로고    scopus 로고
    • Identification of different respiratory viruses, after a cell culture step, by matrix assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS)
    • Calderaro A, ArcangelettiMC, Rodighiero I, ButtriniM,Montecchini S, Vasile Simone R,MediciMC, Chezzi C, De Conto F. 2016. Identification of different respiratory viruses, after a cell culture step, by matrix assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS). Sci Rep 6:36082. http://dx.doi.org/10.1038/srep36082
    • (2016) Sci Rep , vol.6 , pp. 36082
    • Calderaro, A.1    Arcangeletti, M.C.2    Rodighiero, I.3    Buttrini, M.4    Montecchini, S.5    Vasile Simone, R.6    Medici, M.C.7    Chezzi, C.8    De Conto, F.9
  • 129
    • 84871975148 scopus 로고    scopus 로고
    • Application of mass spectrometry to molecular surveillance of hepatitis B and C viral infections
    • Ganova-Raeva LM, Dimitrova ZE, Campo DS, Khudyakov Y. 2012. Application of mass spectrometry to molecular surveillance of hepatitis B and C viral infections. Antivir Ther 17(7 Part B):1477-1482. http://dx.doi .org/10.3851/IMP2466
    • (2012) Antivir Ther , vol.17 , Issue.7 , pp. 1477-1482
    • Ganova-Raeva, L.M.1    Dimitrova, Z.E.2    Campo, D.S.3    Khudyakov, Y.4
  • 131
    • 84874617127 scopus 로고    scopus 로고
    • Microsphere suspension array assays for detection and differentiation of Hendra and Nipah viruses
    • Foord AJ, White JR, Colling A, Heine HG. 2013. Microsphere suspension array assays for detection and differentiation of Hendra and Nipah viruses. BioMed Res Int 2013:289295. http://dx.doi.org/10.1155 /2013/289295
    • (2013) BioMed Res Int , vol.2013
    • Foord, A.J.1    White, J.R.2    Colling, A.3    Heine, H.G.4
  • 132
    • 84975473033 scopus 로고    scopus 로고
    • Simultaneous detection of 13 viruses involved in meningoencephalitis using a newly developed multiplex PCR Mag-array system
    • Shi X, Wu R, Shi M, Zhou L, Wu M, Yang Y, An X, Dai W, Tian L, Zhang C, Ma X, Zhao G. 2016. Simultaneous detection of 13 viruses involved in meningoencephalitis using a newly developed multiplex PCR Mag-array system. Int J Infect Dis 49:80-86. http://dx.doi.org/10.1016/j .ijid.2016.05.023
    • (2016) Int J Infect Dis , vol.49 , pp. 80-86
    • Shi, X.1    Wu, R.2    Shi, M.3    Zhou, L.4    Wu, M.5    Yang, Y.6    An, X.7    Dai, W.8    Tian, L.9    Zhang, C.10    Ma, X.11    Zhao, G.12
  • 133
    • 85006877788 scopus 로고    scopus 로고
    • Simultaneous detection of multiple viruses based on chemiluminescence and magnetic separation
    • Ali Z, Wang J, Tang Y, Liu B, He N, Li Z. 2016. Simultaneous detection of multiple viruses based on chemiluminescence and magnetic separation. Biomater Sci 5:57-66. http://dx.doi.org/10.1039/C6BM00527F
    • (2016) Biomater Sci , vol.5 , pp. 57-66
    • Ali, Z.1    Wang, J.2    Tang, Y.3    Liu, B.4    He, N.5    Li, Z.6
  • 135
    • 7444246060 scopus 로고    scopus 로고
    • Triggered amplification by hybridization chain reaction
    • Dirks RM, Pierce NA. 2004. Triggered amplification by hybridization chain reaction. Proc Natl Acad Sci U S A 101:15275-15278. http:// dx.doi.org/10.1073/pnas.0407024101
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 15275-15278
    • Dirks, R.M.1    Pierce, N.A.2
  • 136
    • 84922481959 scopus 로고    scopus 로고
    • Comparison of ultradeep versus Sanger sequencing detection of minority mutations on the HIV-1 drug resistance interpretations after virological failure
    • Mohamed S, Penaranda G, Gonzalez D, Camus C, Khiri H, Boulmé R, Sayada C, Philibert P, Olive D, Halfon P. 2014. Comparison of ultradeep versus Sanger sequencing detection of minority mutations on the HIV-1 drug resistance interpretations after virological failure. AIDS 28: 1315-1324. http://dx.doi.org/10.1097/QAD.0000000000000267
    • (2014) AIDS , vol.28 , pp. 1315-1324
    • Mohamed, S.1    Penaranda, G.2    Gonzalez, D.3    Camus, C.4    Khiri, H.5    Boulmé, R.6    Sayada, C.7    Philibert, P.8    Olive, D.9    Halfon, P.10
  • 137
    • 82255181690 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies to diagnostic virology
    • Barzon L, Lavezzo E,Militello V, Toppo S, Palù G. 2011. Applications of next-generation sequencing technologies to diagnostic virology. Int J Mol Sci 12:7861-7884. http://dx.doi.org/10.3390/ijms12117861
    • (2011) Int J Mol Sci , vol.12 , pp. 7861-7884
    • Barzon, L.1    Lavezzo, E.2    Militello, V.3    Toppo, S.4    Palù, G.5
  • 138
    • 81755185962 scopus 로고    scopus 로고
    • Ultra-deep sequencing for the analysis of viral populations
    • Beerenwinkel N, Zagordi O. 2011. Ultra-deep sequencing for the analysis of viral populations. Curr Opin Virol 1:413-418. http://dx.doi .org/10.1016/j.coviro.2011.07.008
    • (2011) Curr Opin Virol , vol.1 , pp. 413-418
    • Beerenwinkel, N.1    Zagordi, O.2
  • 140
    • 84896944940 scopus 로고    scopus 로고
    • Sensitive deep-sequencing-basedHIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism
    • Gibson RM,Meyer AM,Winner D, Archer J, Feyertag F, Ruiz-Mateos E, Leal M, Robertson DL, Schmotzer CL, Quiñones-Mateu ME. 2014. Sensitive deep-sequencing-basedHIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism. Antimicrob Agents Chemother 58:2167-2185. http://dx.doi.org/10.1128/AAC.02710-13
    • (2014) Antimicrob Agents Chemother , vol.58 , pp. 2167-2185
    • Gibson, R.M.1    Meyer, A.M.2    Winner, D.3    Archer, J.4    Feyertag, F.5    Ruiz-Mateos, E.6    Leal, M.7    Robertson, D.L.8    Schmotzer, C.L.9    Quiñones-Mateu, M.E.10
  • 141
    • 84934909975 scopus 로고    scopus 로고
    • HIV-1 genotypic drug resistance testing: digging deep, reaching wide?
    • Van Laethem K, Theys K, Vandamme AM. 2015. HIV-1 genotypic drug resistance testing: digging deep, reaching wide? Curr Opin Virol 14:16-23. http://dx.doi.org/10.1016/j.coviro.2015.06.001
    • (2015) Curr Opin Virol , vol.14 , pp. 16-23
    • Van Laethem, K.1    Theys, K.2    Vandamme, A.M.3
  • 142
    • 77956667520 scopus 로고    scopus 로고
    • Covering all bases in HIV research: unveiling a hidden world of viral evolution
    • Vrancken B, Lequime S, Theys K, Lemey P. 2010. Covering all bases in HIV research: unveiling a hidden world of viral evolution. AIDS Rev 12:89-102
    • (2010) AIDS Rev , vol.12 , pp. 89-102
    • Vrancken, B.1    Lequime, S.2    Theys, K.3    Lemey, P.4
  • 144
    • 34547643929 scopus 로고    scopus 로고
    • Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance
    • Wang C, Mitsuya Y, Gharizadeh B, Ronaghi M, Shafer RW. 2007. Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res 17:1195-1201. http:// dx.doi.org/10.1101/gr.6468307
    • (2007) Genome Res , vol.17 , pp. 1195-1201
    • Wang, C.1    Mitsuya, Y.2    Gharizadeh, B.3    Ronaghi, M.4    Shafer, R.W.5
  • 145
    • 78649469126 scopus 로고    scopus 로고
    • Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism
    • Dybowski JN, Heider D, Hoffmann D. 2010. Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism. AIDS Res Ther 7:41. http://dx.doi.org/10.1186/1742-6405-7-41
    • (2010) AIDS Res Ther , vol.7 , pp. 41
    • Dybowski, J.N.1    Heider, D.2    Hoffmann, D.3
  • 147
    • 0033063294 scopus 로고    scopus 로고
    • Genetic polymorphism near HIV-1 reverse transcriptase resistance-associated codons is a major obstacle for the line probe assay as an alternative method to sequence analysis
    • Koch N, Yahi N, Colson P, Fantini J, Tamalet C. 1999. Genetic polymorphism near HIV-1 reverse transcriptase resistance-associated codons is a major obstacle for the line probe assay as an alternative method to sequence analysis. J Virol Methods 80:25-31. http://dx.doi.org /10.1016/S0166-0934(99)00030-0
    • (1999) J Virol Methods , vol.80 , pp. 25-31
    • Koch, N.1    Yahi, N.2    Colson, P.3    Fantini, J.4    Tamalet, C.5
  • 148
    • 2142819962 scopus 로고    scopus 로고
    • Retrospective analysis of antiretroviral HIV treatment success based on medical history or guided by the reverse hybridisation LiPA HIV genotyping system
    • Alvarez M, García F, Martínez NM, Hernández Quero J, Louwagie J, De Brauwer A, Maroto MC. 2004. Retrospective analysis of antiretroviral HIV treatment success based on medical history or guided by the reverse hybridisation LiPA HIV genotyping system. J Med Virol 73:151-157 http://dx.doi.org/10.1002/jmv.20069
    • (2004) J Med Virol , vol.73 , pp. 151-157
    • Alvarez, M.1    García, F.2    Martínez, N.M.3    Hernández Quero, J.4    Louwagie, J.5    De Brauwer, A.6    Maroto, M.C.7
  • 149
    • 84884530531 scopus 로고    scopus 로고
    • Next-generation sequencing technologies in diagnostic virology
    • Barzon L, Lavezzo E, Costanzi G, Franchin E, Toppo S, Palù G. 2013 Next-generation sequencing technologies in diagnostic virology. J Clin Virol 58:346-350. http://dx.doi.org/10.1016/j.jcv.2013.03.003
    • (2013) J Clin Virol , vol.58 , pp. 346-350
    • Barzon, L.1    Lavezzo, E.2    Costanzi, G.3    Franchin, E.4    Toppo, S.5    Palù, G.6
  • 151
    • 84879794051 scopus 로고    scopus 로고
    • Frequency and implications of HIV superinfection
    • Redd AD, Quinn TC, Tobian AAR. 2013. Frequency and implications of HIV superinfection. Lancet Infect Dis 13:622-628. http://dx .doi.org/10.1016/S1473-3099(13)70066-5
    • (2013) Lancet Infect Dis , vol.13 , pp. 622-628
    • Redd, A.D.1    Quinn, T.C.2    Tobian, A.A.R.3
  • 152
    • 84866869125 scopus 로고    scopus 로고
    • Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 "deep" sequencing
    • Lee GQ, Swenson LC, Poon AFY, Martin JN, Hatano H, Deeks SG, Harrigan PR. 2012. Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 "deep" sequencing. PLoS One 7:e46181. http://dx.doi.org/10.1371 /journal.pone.0046181
    • (2012) PLoS One , vol.7
    • Lee, G.Q.1    Swenson, L.C.2    Poon, A.F.Y.3    Martin, J.N.4    Hatano, H.5    Deeks, S.G.6    Harrigan, P.R.7
  • 154
    • 77952709675 scopus 로고    scopus 로고
    • Hepatitis C virus transmission bottlenecks analyzed by deep sequencing
    • Wang GP, Sherrill-Mix SA, Chang K-M, Quince C, Bushman FD. 2010 Hepatitis C virus transmission bottlenecks analyzed by deep sequencing. J Virol 84:6218-6228. http://dx.doi.org/10.1128/JVI.02271-09
    • (2010) J Virol , vol.84 , pp. 6218-6228
    • Wang, G.P.1    Sherrill-Mix, S.A.2    Chang, K.-M.3    Quince, C.4    Bushman, F.D.5
  • 156
    • 84975875680 scopus 로고    scopus 로고
    • Genetic drift, purifying selection and vector genotype shape dengue virus intra-host genetic diversity in mosquitoes
    • Lequime S, Fontaine A, Ar Gouilh M, Moltini-Conclois I, Lambrechts L. 2016. Genetic drift, purifying selection and vector genotype shape dengue virus intra-host genetic diversity in mosquitoes. PLoS Genet 12: e1006111. http://dx.doi.org/10.1371/journal.pgen.1006111
    • (2016) PLoS Genet , vol.12
    • Lequime, S.1    Fontaine, A.2    Ar Gouilh, M.3    Moltini-Conclois, I.4    Lambrechts, L.5
  • 158
    • 84989247273 scopus 로고    scopus 로고
    • Evolutionary dynamics of dengue virus populations within the mosquito vector
    • Lambrechts L, Lequime S. 2016. Evolutionary dynamics of dengue virus populations within the mosquito vector. Curr Opin Virol 21:47-53. http://dx.doi.org/10.1016/j.coviro.2016.07.013
    • (2016) Curr Opin Virol , vol.21 , pp. 47-53
    • Lambrechts, L.1    Lequime, S.2
  • 159
    • 84888581141 scopus 로고    scopus 로고
    • Non-coding RNAs in hepatitis C-induced hepatocellular carcinoma: dysregulation and implications for early detection, diagnosis and therapy
    • Hou W, Bonkovsky HL. 2013. Non-coding RNAs in hepatitis C-induced hepatocellular carcinoma: dysregulation and implications for early detection, diagnosis and therapy. World J Gastroenterol 19:7836-7845 http://dx.doi.org/10.3748/wjg.v19.i44.7836
    • (2013) World J Gastroenterol , vol.19 , pp. 7836-7845
    • Hou, W.1    Bonkovsky, H.L.2
  • 160
    • 84991204660 scopus 로고    scopus 로고
    • Development and validation of a templateindependent next-generation sequencing assay for detecting low-level resistance-associated variants of hepatitis C virus
    • Wei B, Kang J, Kibukawa M, Chen L, Qiu P, Lahser F, Marton M, Levitan D. 2016. Development and validation of a templateindependent next-generation sequencing assay for detecting low-level resistance-associated variants of hepatitis C virus. J Mol Diagn 18:643-656 http://dx.doi.org/10.1016/j.jmoldx.2016.04.001
    • (2016) J Mol Diagn , vol.18 , pp. 643-656
    • Wei, B.1    Kang, J.2    Kibukawa, M.3    Chen, L.4    Qiu, P.5    Lahser, F.6    Marton, M.7    Levitan, D.8
  • 161
    • 84937511221 scopus 로고    scopus 로고
    • Origins and evolution of viruses of eukaryotes: the ultimate modularity
    • Koonin EV, Dolja VV, Krupovic M. 2015. Origins and evolution of viruses of eukaryotes: the ultimate modularity. Virology 479-480:2-25. http://dx.doi.org/10.1016/j.virol.2015.02.039
    • (2015) Virology , vol.479-480 , pp. 2-25
    • Koonin, E.V.1    Dolja, V.V.2    Krupovic, M.3
  • 162
    • 79958069377 scopus 로고    scopus 로고
    • Extensive genome-wide variability of human cytomegalovirus in congenitally infected infants
    • Renzette N, Bhattacharjee B, Jensen JD, Gibson L, Kowalik TF. 2011 Extensive genome-wide variability of human cytomegalovirus in congenitally infected infants. PLoS Pathog 7:e1001344. http://dx.doi.org /10.1371/journal.ppat.1001344
    • (2011) PLoS Pathog , vol.7
    • Renzette, N.1    Bhattacharjee, B.2    Jensen, J.D.3    Gibson, L.4    Kowalik, T.F.5
  • 164
    • 84949468738 scopus 로고    scopus 로고
    • Analysis of human cytomegalovirus strain populations in urine samples of newborns by ultra deep sequencing
    • Görzer I, Trajanoski S, Popow-Kraupp T, Puchhammer-Stöckl E. 2015 Analysis of human cytomegalovirus strain populations in urine samples of newborns by ultra deep sequencing. J Clin Virol 73:101-104. http://dx.doi.org/10.1016/j.jcv.2015.11.003
    • (2015) J Clin Virol , vol.73 , pp. 101-104
    • Görzer, I.1    Trajanoski, S.2    Popow-Kraupp, T.3    Puchhammer-Stöckl, E.4
  • 167
    • 84884355784 scopus 로고    scopus 로고
    • Human papillomavirus genome variants
    • Burk RD, Harari A, Chen Z. 2013. Human papillomavirus genome variants. Virology 445:232-243. http://dx.doi.org/10.1016/j.virol.2013 .07.018
    • (2013) Virology , vol.445 , pp. 232-243
    • Burk, R.D.1    Harari, A.2    Chen, Z.3
  • 170
    • 79953279914 scopus 로고    scopus 로고
    • Influenza genome diversity and evolution
    • Tsai KN, Chen GW. 2011. Influenza genome diversity and evolution. Microbes Infect 13:479-488. http://dx.doi.org/10.1016/j.micinf.2011.01.013
    • (2011) Microbes Infect , vol.13 , pp. 479-488
    • Tsai, K.N.1    Chen, G.W.2
  • 173
    • 80051858702 scopus 로고    scopus 로고
    • Rapid detection and subtyping of human influenza A viruses and reassortants by pyrosequencing
    • Deng YM, Caldwell N, Barr IG. 2011. Rapid detection and subtyping of human influenza A viruses and reassortants by pyrosequencing. PLoS One 6:e23400. http://dx.doi.org/10.1371/journal.pone.0023400
    • (2011) PLoS One , vol.6
    • Deng, Y.M.1    Caldwell, N.2    Barr, I.G.3
  • 175
    • 84867692130 scopus 로고    scopus 로고
    • Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission
    • Ghedin E, Holmes EC, DePasse JV, Pinilla LT, Fitch A, Hamelin ME, Papenburg J, Boivin G. 2012. Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission. J Infect Dis 206:1504-1511. http://dx.doi.org/10.1093 /infdis/jis571
    • (2012) J Infect Dis , vol.206 , pp. 1504-1511
    • Ghedin, E.1    Holmes, E.C.2    DePasse, J.V.3    Pinilla, L.T.4    Fitch, A.5    Hamelin, M.E.6    Papenburg, J.7    Boivin, G.8
  • 177
    • 84977958758 scopus 로고    scopus 로고
    • Bayesian inference reveals host-specific contributions to the epidemic expansion of influenza A H5N1
    • Trovão NS, Suchard MA, Baele G, Gilbert M, Lemey P. 2015. Bayesian inference reveals host-specific contributions to the epidemic expansion of influenza A H5N1. Mol Biol Evol 32:3264-3275
    • (2015) Mol Biol Evol , vol.32 , pp. 3264-3275
    • Trovão, N.S.1    Suchard, M.A.2    Baele, G.3    Gilbert, M.4    Lemey, P.5
  • 178
    • 78650545749 scopus 로고    scopus 로고
    • Massively parallel sequencing for monitoring genetic consistency and quality control of live viral vaccines
    • Neverov A, Chumakov K. 2010. Massively parallel sequencing for monitoring genetic consistency and quality control of live viral vaccines. Proc Natl Acad Sci U S A 107:20063-20068. http://dx.doi.org/10.1073 /pnas.1012537107
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 20063-20068
    • Neverov, A.1    Chumakov, K.2
  • 179
    • 77952692589 scopus 로고    scopus 로고
    • Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus
    • Victoria JG, Wang C, Jones MS, Jaing C, McLoughlin K, Gardner S, Delwart EL. 2010. Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus. J Virol 84:6033-6040. http://dx.doi.org/10.1128/JVI.02690-09
    • (2010) J Virol , vol.84 , pp. 6033-6040
    • Victoria, J.G.1    Wang, C.2    Jones, M.S.3    Jaing, C.4    McLoughlin, K.5    Gardner, S.6    Delwart, E.L.7
  • 180
    • 84884301690 scopus 로고    scopus 로고
    • The genomics of emerging pathogens
    • Firth C, Lipkin WI. 2013. The genomics of emerging pathogens. Annu Rev Genomics Hum Genet 14:281-300. http://dx.doi.org/10.1146 /annurev-genom-091212-153446
    • (2013) Annu Rev Genomics Hum Genet , vol.14 , pp. 281-300
    • Firth, C.1    Lipkin, W.I.2
  • 181
    • 77957985271 scopus 로고    scopus 로고
    • Microbe hunting
    • Lipkin WI. 2010. Microbe hunting. Microbiol Mol Biol Rev 74:363-377 http://dx.doi.org/10.1128/MMBR.00007-10
    • (2010) Microbiol Mol Biol Rev , vol.74 , pp. 363-377
    • Lipkin, W.I.1
  • 182
    • 84882860961 scopus 로고    scopus 로고
    • Viral pathogen discovery
    • Chiu CY. 2013. Viral pathogen discovery. Curr Opin Microbiol 16:468-478. http://dx.doi.org/10.1016/j.mib.2013.05.001
    • (2013) Curr Opin Microbiol , vol.16 , pp. 468-478
    • Chiu, C.Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.