-
1
-
-
84879259420
-
Molecular epidemiology of viral diseases in the era of next generation sequencing
-
Cruz-Rivera M, Forbi JC, Yamasaki LHT, Vazquez-Chacon CA, Martinez-Guarneros A, Carpio-Pedroza JC, Escobar-Gutiérrez A, Ruiz-Tovar K, Fonseca-Coronado S, Vaughan G. 2013. Molecular epidemiology of viral diseases in the era of next generation sequencing. J Clin Virol 57:378-380. http://dx.doi.org/10.1016/j.jcv.2013.04.021
-
(2013)
J Clin Virol
, vol.57
, pp. 378-380
-
-
Cruz-Rivera, M.1
Forbi, J.C.2
Yamasaki, L.H.T.3
Vazquez-Chacon, C.A.4
Martinez-Guarneros, A.5
Carpio-Pedroza, J.C.6
Escobar-Gutiérrez, A.7
Ruiz-Tovar, K.8
Fonseca-Coronado, S.9
Vaughan, G.10
-
2
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle CA. 2007. Marine viruses-major players in the global ecosystem. Nat Rev Microbiol 5:801-812. http://dx.doi.org/10.1038/nrmicro1750
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
3
-
-
84857371051
-
Metagenomics and future perspectives in virus discovery
-
Mokili JL, Rohwer F, Dutilh BE. 2012. Metagenomics and future perspectives in virus discovery. Curr Opin Virol 2:63-77. http://dx.doi .org/10.1016/j.coviro.2011.12.004
-
(2012)
Curr Opin Virol
, vol.2
, pp. 63-77
-
-
Mokili, J.L.1
Rohwer, F.2
Dutilh, B.E.3
-
4
-
-
84939526110
-
Viral dark matter and virus-host interactions resolved from publicly available microbial genomes
-
Roux S, Hallam SJ, Woyke T, Sullivan MB. 2015. Viral dark matter and virus-host interactions resolved from publicly available microbial genomes. Elife 4:1-20. http://dx.doi.org/10.7554/eLife.08490
-
(2015)
Elife
, vol.4
, pp. 1-20
-
-
Roux, S.1
Hallam, S.J.2
Woyke, T.3
Sullivan, M.B.4
-
6
-
-
46749091188
-
End-point limiting-dilution real-time PCR assay for evaluation of hepatitis C virus quasispecies in serum: performance under optimal and suboptimal conditions
-
Ramachandran S, Xia GL, Ganova-Raeva LM, Nainan OV, Khudyakov Y. 2008. End-point limiting-dilution real-time PCR assay for evaluation of hepatitis C virus quasispecies in serum: performance under optimal and suboptimal conditions. J Virol Methods 151:217-224. http://dx.doi.org /10.1016/j.jviromet.2008.05.005
-
(2008)
J Virol Methods
, vol.151
, pp. 217-224
-
-
Ramachandran, S.1
Xia, G.L.2
Ganova-Raeva, L.M.3
Nainan, O.V.4
Khudyakov, Y.5
-
7
-
-
84861214061
-
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection
-
Henn MR, Boutwell CL, Charlebois P, Lennon NJ, Power KA, Macalalad AR, Berlin AM,Malboeuf CM, Ryan EM, Gnerre S, ZodyMC, Erlich RL, Green LM, Berical A,Wang Y, CasaliM, Streeck H, Bloom AK, Dudek T, Tully D, Newman R, Axten KL, Gladden AD, Battis L, Kemper M, Zeng Q, Shea TP, Gujja S, Zedlack C, Gasser O, Brander C, Hess C, Günthard HF, Brumme ZL, Brumme CJ, Bazner S, Rychert J, Tinsley JP, Mayer KH, Rosenberg E, Pereyra F, Levin JZ, Young SK, Jessen H, Altfeld M, Birren BW, Walker BD, Allen TM. 2012. Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathog 8:e1002529. http:// dx.doi.org/10.1371/journal.ppat.1002529
-
(2012)
PLoS Pathog
, vol.8
-
-
Henn, M.R.1
Boutwell, C.L.2
Charlebois, P.3
Lennon, N.J.4
Power, K.A.5
Macalalad, A.R.6
Berlin, A.M.7
Malboeuf, C.M.8
Ryan, E.M.9
Gnerre, S.10
Zody, M.C.11
Erlich, R.L.12
Green, L.M.13
Berical, A.14
Wang, Y.15
Casali, M.16
Streeck, H.17
Bloom, A.K.18
Dudek, T.19
Tully, D.20
Newman, R.21
Axten, K.L.22
Gladden, A.D.23
Battis, L.24
Kemper, M.25
Zeng, Q.26
Shea, T.P.27
Gujja, S.28
Zedlack, C.29
Gasser, O.30
Brander, C.31
Hess, C.32
Günthard, H.F.33
Brumme, Z.L.34
Brumme, C.J.35
Bazner, S.36
Rychert, J.37
Tinsley, J.P.38
Mayer, K.H.39
Rosenberg, E.40
Pereyra, F.41
Levin, J.Z.42
Young, S.K.43
Jessen, H.44
Altfeld, M.45
Birren, B.W.46
Walker, B.D.47
Allen, T.M.48
more..
-
8
-
-
79960848222
-
Temporal variations in the hepatitis C virus intrahost population during chronic infection
-
Ramachandran S, Campo DS, Dimitrova ZE, Xia GL, Purdy MA, Khudyakov YE. 2011. Temporal variations in the hepatitis C virus intrahost population during chronic infection. J Virol 85:6369-6380. http://dx.doi.org /10.1128/JVI.02204-10
-
(2011)
J Virol
, vol.85
, pp. 6369-6380
-
-
Ramachandran, S.1
Campo, D.S.2
Dimitrova, Z.E.3
Xia, G.L.4
Purdy, M.A.5
Khudyakov, Y.E.6
-
9
-
-
84866073734
-
Human viruses: discovery and emergence
-
Woolhouse M, Scott F, Hudson Z, Howey R, Chase-Topping M. 2012. Human viruses: discovery and emergence. Philos Trans R Soc Lond B Biol Sci 367:2864-2871. http://dx.doi.org/10.1098/rstb.2011.0354
-
(2012)
Philos Trans R Soc Lond B Biol Sci
, vol.367
, pp. 2864-2871
-
-
Woolhouse, M.1
Scott, F.2
Hudson, Z.3
Howey, R.4
Chase-Topping, M.5
-
10
-
-
48749123605
-
Temporal trends in the discovery of human viruses
-
Woolhouse MEJ, Howey R, Gaunt E, Reilly L, Chase-Topping M, Savill N. 2008. Temporal trends in the discovery of human viruses. Proc Biol Sci 275:2111-2115. http://dx.doi.org/10.1098/rspb.2008.0294
-
(2008)
Proc Biol Sci
, vol.275
, pp. 2111-2115
-
-
Woolhouse, M.E.J.1
Howey, R.2
Gaunt, E.3
Reilly, L.4
Chase-Topping, M.5
Savill, N.6
-
11
-
-
69149093400
-
In vitro and in vivo characterization of new swine-origin H1N1 influenza viruses
-
Itoh Y, Shinya K, KisoM,Watanabe T, Sakoda Y, Hatta M, Muramoto Y, Tamura D, Sakai-Tagawa Y, Noda T, Sakabe S, Imai M, Hatta Y, Watanabe S, Li C, Yamada S, Fujii K, Murakami S, Imai H, Kakugawa S, Ito M, Takano R, Iwatsuki-Horimoto K, Shimojima M, Horimoto T, Goto H, Takahashi K,Makino A, IshigakiH,NakayamaM,OkamatsuM, Takahashi K, Warshauer D, Shult PA, Saito R, Suzuki H, Furuta Y, Yamashita M, Mitamura K, Nakano K, Nakamura M, Brockman-Schneider R, Mitamura H, Yamazaki M, Sugaya N, Suresh M, OzawaM, Neumann G, Gern J, Kida H, Ogasawara K, Kawaoka Y. 2009. In vitro and in vivo characterization of new swine-origin H1N1 influenza viruses. Nature 460:1021-1025. http://dx.doi.org/10.1038/nature08260
-
(2009)
Nature
, vol.460
, pp. 1021-1025
-
-
Itoh, Y.1
Shinya, K.2
Kiso, M.3
Watanabe, T.4
Sakoda, Y.5
Hatta, M.6
Muramoto, Y.7
Tamura, D.8
Sakai-Tagawa, Y.9
Noda, T.10
Sakabe, S.11
Imai, M.12
Hatta, Y.13
Watanabe, S.14
Li, C.15
Yamada, S.16
Fujii, K.17
Murakami, S.18
Imai, H.19
Kakugawa, S.20
Ito, M.21
Takano, R.22
Iwatsuki-Horimoto, K.23
Shimojima, M.24
Horimoto, T.25
Goto, H.26
Takahashi, K.27
Makino, A.28
Ishigaki, H.29
Nakayama, M.30
Okamatsu, M.31
Takahashi, K.32
Warshauer, D.33
Shult, P.A.34
Saito, R.35
Suzuki, H.36
Furuta, Y.37
Yamashita, M.38
Mitamura, K.39
Nakano, K.40
Nakamura, M.41
Brockman-Schneider, R.42
Mitamura, H.43
Yamazaki, M.44
Sugaya, N.45
Suresh, M.46
Ozawa, M.47
Neumann, G.48
Gern, J.49
Kida, H.50
Ogasawara, K.51
Kawaoka, Y.52
more..
-
12
-
-
84959184239
-
Emergence and development of H7N9 influenza viruses in China
-
Zhu H, Lam TTY, Smith DK, Guan Y. 2016. Emergence and development of H7N9 influenza viruses in China. Curr Opin Virol 16:106-113 http://dx.doi.org/10.1016/j.coviro.2016.01.020
-
(2016)
Curr Opin Virol
, vol.16
, pp. 106-113
-
-
Zhu, H.1
Lam, T.T.Y.2
Smith, D.K.3
Guan, Y.4
-
13
-
-
84961285054
-
Epidemiology, genetic recombination, and pathogenesis of coronaviruses
-
Su S, Wong G, Shi W, Liu J, Lai ACK, Zhou J, Liu W, Bi Y, Gao GF. 2016 Epidemiology, genetic recombination, and pathogenesis of coronaviruses. Trends Microbiol 24:490-502. http://dx.doi.org/10.1016/j.tim .2016.03.003
-
(2016)
Trends Microbiol
, vol.24
, pp. 490-502
-
-
Su, S.1
Wong, G.2
Shi, W.3
Liu, J.4
Lai, A.C.K.5
Zhou, J.6
Liu, W.7
Bi, Y.8
Gao, G.F.9
-
14
-
-
84955203553
-
Is HEV an emerging problem in industrialized countries?
-
Sayed IM, Vercouter A-S, Abdelwahab SF, Vercauteren K, Meuleman P. 2015 Is HEV an emerging problem in industrialized countries? Hepatology 62:1883-1892
-
(2015)
Hepatology
, vol.62
, pp. 1883-1892
-
-
Sayed, I.M.1
Vercouter, A.-S.2
Abdelwahab, S.F.3
Vercauteren, K.4
Meuleman, P.5
-
16
-
-
84934779952
-
What factors might have led to the emergence of Ebola in West Africa?
-
Alexander KA, Sanderson CE, Marathe M, Lewis BL, Rivers CM, Shaman J, Drake JM, Lofgren E, Dato VM, EisenbergMC, Eubank S. 2015. What factors might have led to the emergence of Ebola in West Africa? PLoS Negl Trop Dis 9:e0003652. http://dx.doi.org/10.1371/journal.pntd .0003652
-
(2015)
PLoS Negl Trop Dis
, vol.9
-
-
Alexander, K.A.1
Sanderson, C.E.2
Marathe, M.3
Lewis, B.L.4
Rivers, C.M.5
Shaman, J.6
Drake, J.M.7
Lofgren, E.8
Dato, V.M.9
Eisenberg, M.C.10
Eubank, S.11
-
17
-
-
84893713454
-
Molecular evolution of Zika virus during its emergence in the 20(th) century
-
Faye O, Freire CCM, Iamarino A, Faye O, de Oliveira JVC, Diallo M, Zanotto PMA, Sall AA. 2014. Molecular evolution of Zika virus during its emergence in the 20(th) century. PLoS Negl Trop Dis 8:e2636. http:// dx.doi.org/10.1371/journal.pntd.0002636
-
(2014)
PLoS Negl Trop Dis
, vol.8
-
-
Faye, O.1
Freire, C.C.M.2
Iamarino, A.3
Faye, O.4
de Oliveira, J.V.C.5
Diallo, M.6
Zanotto, P.M.A.7
Sall, A.A.8
-
18
-
-
84928112811
-
A systematic approach to novel virus discovery in emerging infectious disease outbreaks
-
Sridhar S, To KKW, Chan JFW, Lau SKP, Woo PCY, Yuen KY. 2015. A systematic approach to novel virus discovery in emerging infectious disease outbreaks. J Mol Diagn 17:230-241. http://dx.doi.org/10.1016/j .jmoldx.2014.12.002
-
(2015)
J Mol Diagn
, vol.17
, pp. 230-241
-
-
Sridhar, S.1
To, K.K.W.2
Chan, J.F.W.3
Lau, S.K.P.4
Woo, P.C.Y.5
Yuen, K.Y.6
-
20
-
-
82855177787
-
Metagenomics and the molecular identification of novel viruses
-
Bexfield N, Kellam P. 2011. Metagenomics and the molecular identification of novel viruses. Vet J 190:191-198. http://dx.doi.org/10.1016/j .tvjl.2010.10.014
-
(2011)
Vet J
, vol.190
, pp. 191-198
-
-
Bexfield, N.1
Kellam, P.2
-
21
-
-
84988349121
-
Next-generation sequencing in clinical virology: discovery of new viruses
-
Datta S, Budhauliya R, Das B, Chatterjee S, Vanlalhmuaka, Veer V. 2015 Next-generation sequencing in clinical virology: discovery of new viruses. World J Virol 4:265-276. http://dx.doi.org/10.5501/wjv.v4 .i3.265
-
(2015)
World J Virol
, vol.4
, pp. 265-276
-
-
Datta, S.1
Budhauliya, R.2
Das, B.3
Chatterjee, S.4
Vanlalhmuaka.5
Veer, V.6
-
22
-
-
65949108590
-
Metagenomic pyrosequencing and microbial identification
-
Petrosino JF, Highlander S, Luna RA, Gibbs RA, Versalovic J. 2009. Metagenomic pyrosequencing and microbial identification. Clin Chem 55:856-866. http://dx.doi.org/10.1373/clinchem.2008.107565
-
(2009)
Clin Chem
, vol.55
, pp. 856-866
-
-
Petrosino, J.F.1
Highlander, S.2
Luna, R.A.3
Gibbs, R.A.4
Versalovic, J.5
-
23
-
-
64749109065
-
Laboratory procedures to generate viral metagenomes
-
Thurber RV, Haynes M, Breitbart M, Wegley L, Rohwer F. 2009. Laboratory procedures to generate viral metagenomes. Nat Protoc 4:470-483 http://dx.doi.org/10.1038/nprot.2009.10
-
(2009)
Nat Protoc
, vol.4
, pp. 470-483
-
-
Thurber, R.V.1
Haynes, M.2
Breitbart, M.3
Wegley, L.4
Rohwer, F.5
-
24
-
-
13844266169
-
Characterization of virus isolates by particle-associated nucleic acid PCR
-
Stang A, Korn K, Wildner O, überla K. 2005. Characterization of virus isolates by particle-associated nucleic acid PCR. J Clin Microbiol 43:716-720. http://dx.doi.org/10.1128/JCM.43.2.716-720.2005
-
(2005)
J Clin Microbiol
, vol.43
, pp. 716-720
-
-
Stang, A.1
Korn, K.2
Wildner, O.3
Überla, K.4
-
25
-
-
33644873469
-
Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing
-
Breitbart M, Rohwer F. 2005. Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques 39:729-736. http://dx.doi.org/10.2144/000112019
-
(2005)
Biotechniques
, vol.39
, pp. 729-736
-
-
Breitbart, M.1
Rohwer, F.2
-
26
-
-
0025919217
-
Use of ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton
-
Suttle CA, Chan AM, Cottrell MT. 1991. Use of ultrafiltration to isolate viruses from seawater which are pathogens of marine phytoplankton. Appl Environ Microbiol 57:721-726
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 721-726
-
-
Suttle, C.A.1
Chan, A.M.2
Cottrell, M.T.3
-
27
-
-
77951134860
-
Metagenomics for the discovery of novel human viruses
-
Tang P, Chiu C. 2010. Metagenomics for the discovery of novel human viruses. Future Microbiol 5:177-189. http://dx.doi.org/10.2217 /fmb.09.120
-
(2010)
Future Microbiol
, vol.5
, pp. 177-189
-
-
Tang, P.1
Chiu, C.2
-
28
-
-
77957931143
-
DNA viruses: the really big ones (giruses)
-
Van Etten JL, Lane LC, Dunigan DD. 2010. DNA viruses: the really big ones (giruses). Annu Rev Microbiol 64:83-99. http://dx.doi.org/10 .1146/annurev.micro.112408.134338
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 83-99
-
-
Van Etten, J.L.1
Lane, L.C.2
Dunigan, D.D.3
-
29
-
-
84947250213
-
Host-associated metagenomics: a guide to generating infectious RNA viromes
-
Temmam S, Monteil-Bouchard S, Robert C, Pascalis H, Michelle C, Jardot P, Charrel R, Raoult D, Desnues C. 2015. Host-associated metagenomics: a guide to generating infectious RNA viromes. PLoS One 10: e0139810. http://dx.doi.org/10.1371/journal.pone.0139810
-
(2015)
PLoS One
, vol.10
-
-
Temmam, S.1
Monteil-Bouchard, S.2
Robert, C.3
Pascalis, H.4
Michelle, C.5
Jardot, P.6
Charrel, R.7
Raoult, D.8
Desnues, C.9
-
30
-
-
84919623528
-
Protocol for metagenomic virus detection in clinical specimens
-
Kohl C, Brinkmann A, Dabrowski PW, Radonic A, Nitsche A, Kurth A. 2015. Protocol for metagenomic virus detection in clinical specimens. Emerg Infect Dis 21:48-57. http://dx.doi.org/10.3201/eid2101.140766
-
(2015)
Emerg Infect Dis
, vol.21
, pp. 48-57
-
-
Kohl, C.1
Brinkmann, A.2
Dabrowski, P.W.3
Radonic, A.4
Nitsche, A.5
Kurth, A.6
-
31
-
-
77957689489
-
Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
-
He S, Wurtzel O, Singh K, Froula JL, Yilmaz S, Tringe SG, Wang Z, Chen F, Lindquist EA, Sorek R, Hugenholtz P. 2010. Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nat Methods 7:807-812. http://dx.doi.org/10.1038/nmeth.1507
-
(2010)
Nat Methods
, vol.7
, pp. 807-812
-
-
He, S.1
Wurtzel, O.2
Singh, K.3
Froula, J.L.4
Yilmaz, S.5
Tringe, S.G.6
Wang, Z.7
Chen, F.8
Lindquist, E.A.9
Sorek, R.10
Hugenholtz, P.11
-
32
-
-
33751098497
-
Virus discovery by sequenceindependent genome amplification
-
Ambrose HE, Clewley JP. 2006. Virus discovery by sequenceindependent genome amplification. Rev Med Virol 16:365-383. http://dx .doi.org/10.1002/rmv.515
-
(2006)
Rev Med Virol
, vol.16
, pp. 365-383
-
-
Ambrose, H.E.1
Clewley, J.P.2
-
33
-
-
84902526814
-
Accurate viral population assembly from ultra-deep sequencing data
-
Mangul S, Wu NC, Mancuso N, Zelikovsky A, Sun R, Eskin E. 2014 Accurate viral population assembly from ultra-deep sequencing data. Bioinformatics 30:i329-i337. http://dx.doi.org/10.1093/bioinformatics /btu295
-
(2014)
Bioinformatics
, vol.30
, pp. i329-i337
-
-
Mangul, S.1
Wu, N.C.2
Mancuso, N.3
Zelikovsky, A.4
Sun, R.5
Eskin, E.6
-
34
-
-
84867397631
-
MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
-
Namiki T, Hachiya T, Tanaka H, Sakakibara Y. 2012. MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads. Nucleic Acids Res 40:e155. http://dx.doi.org/10 .1093/nar/gks678
-
(2012)
Nucleic Acids Res
, vol.40
, pp. e155
-
-
Namiki, T.1
Hachiya, T.2
Tanaka, H.3
Sakakibara, Y.4
-
35
-
-
0024509701
-
Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome
-
Choo QL, Kuo G, Weiner AJ, Overby LR, Bradley DW, Houghton M. 1989 Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome. Science 244:359-362. http://dx.doi.org /10.1126/science.2523562
-
(1989)
Science
, vol.244
, pp. 359-362
-
-
Choo, Q.L.1
Kuo, G.2
Weiner, A.J.3
Overby, L.R.4
Bradley, D.W.5
Houghton, M.6
-
36
-
-
70449112966
-
Basic concepts of microarrays and potential applications in clinical microbiology
-
Miller MB, Tang YW. 2009. Basic concepts of microarrays and potential applications in clinical microbiology. Clin Microbiol Rev 22: 611-633. http://dx.doi.org/10.1128/CMR.00019-09
-
(2009)
Clin Microbiol Rev
, vol.22
, pp. 611-633
-
-
Miller, M.B.1
Tang, Y.W.2
-
37
-
-
18744377158
-
Microarray-based detection and genotyping of viral pathogens
-
Wang D, Coscoy L, Zylberberg M, Avila PC, Boushey HA, Ganem D, DeRisi JL. 2002. Microarray-based detection and genotyping of viral pathogens. Proc Natl Acad Sci U S A 99:15687-15692. http://dx.doi.org /10.1073/pnas.242579699
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 15687-15692
-
-
Wang, D.1
Coscoy, L.2
Zylberberg, M.3
Avila, P.C.4
Boushey, H.A.5
Ganem, D.6
DeRisi, J.L.7
-
38
-
-
84891035838
-
Introduction to microarray-based detection methods
-
Kostic T, Butaye P, Schrenzel J (ed). Wiley-Blackwell, Berlin, Germany
-
Schrenzel J, Kostic T, Bodrossy L, Francois P. 2009. Introduction to microarray-based detection methods, p 1-34. In Kostic T, Butaye P, Schrenzel J (ed), Detection of Highly Dangerous Pathogens: Microarray Methods for BSL 3 and BSL 4 Agents. Wiley-Blackwell, Berlin, Germany
-
(2009)
Detection of Highly Dangerous Pathogens: Microarray Methods for BSL 3 and BSL 4 Agents
, pp. 1-34
-
-
Schrenzel, J.1
Kostic, T.2
Bodrossy, L.3
Francois, P.4
-
39
-
-
84930087989
-
Microarraybased genotyping and detection of drug-resistant HBV mutations from 620 Chinese patients with chronic HBV infection
-
Hua W, Zhang G, Guo S, Li W, Sun L, Xiang G. 2015. Microarraybased genotyping and detection of drug-resistant HBV mutations from 620 Chinese patients with chronic HBV infection. Braz J Infect Dis 19:291-295. http://dx.doi.org/10.1016/j.bjid.2015.03.012
-
(2015)
Braz J Infect Dis
, vol.19
, pp. 291-295
-
-
Hua, W.1
Zhang, G.2
Guo, S.3
Li, W.4
Sun, L.5
Xiang, G.6
-
40
-
-
84924765083
-
Development of a single nucleotide polymorphism DNA microarray for the detection and genotyping of the SARS coronavirus
-
Guo X, Geng P, Wang Q, Cao B, Liu B. 2014. Development of a single nucleotide polymorphism DNA microarray for the detection and genotyping of the SARS coronavirus. J Microbiol Biotechnol 24:1445-1454. http://dx.doi.org/10.4014/jmb.1404.04024
-
(2014)
J Microbiol Biotechnol
, vol.24
, pp. 1445-1454
-
-
Guo, X.1
Geng, P.2
Wang, Q.3
Cao, B.4
Liu, B.5
-
41
-
-
84919464055
-
DNA microarray for detection of gastrointestinal viruses
-
Martínez MA, Soto-Del Río ML, Gutiérrez RM, Chiu CY, Greninger AL, Contreras JF, López S, Arias CF, Isa P. 2015. DNA microarray for detection of gastrointestinal viruses. J Clin Microbiol 53:136-145. http:// dx.doi.org/10.1128/JCM.01317-14
-
(2015)
J Clin Microbiol
, vol.53
, pp. 136-145
-
-
Martínez, M.A.1
Soto-Del Río, M.L.2
Gutiérrez, R.M.3
Chiu, C.Y.4
Greninger, A.L.5
Contreras, J.F.6
López, S.7
Arias, C.F.8
Isa, P.9
-
42
-
-
52949153584
-
Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections
-
Chiu CY, Greninger AL, Kanada K, Kwok T, Fischer KF, Runckel C, Louie JK, Glaser CA, Yagi S, Schnurr DP, Haggerty TD, Parsonnet J, Ganem D, DeRisi JL. 2008. Identification of cardioviruses related to Theiler's murine encephalomyelitis virus in human infections. Proc Natl Acad Sci U S A 105:14124-14129. http://dx.doi.org/10.1073/pnas .0805968105
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 14124-14129
-
-
Chiu, C.Y.1
Greninger, A.L.2
Kanada, K.3
Kwok, T.4
Fischer, K.F.5
Runckel, C.6
Louie, J.K.7
Glaser, C.A.8
Yagi, S.9
Schnurr, D.P.10
Haggerty, T.D.11
Parsonnet, J.12
Ganem, D.13
DeRisi, J.L.14
-
43
-
-
34548514438
-
Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity
-
Kistler A, Avila PC, Rouskin S, Wang D, Ward T, Yagi S, Schnurr D, Ganem D, DeRisi JL, Boushey HA. 2007. Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity. J Infect Dis 196:817-825 http://dx.doi.org/10.1086/520816
-
(2007)
J Infect Dis
, vol.196
, pp. 817-825
-
-
Kistler, A.1
Avila, P.C.2
Rouskin, S.3
Wang, D.4
Ward, T.5
Yagi, S.6
Schnurr, D.7
Ganem, D.8
DeRisi, J.L.9
Boushey, H.A.10
-
44
-
-
33846113818
-
Panmicrobial oligonucleotide array for diagnosis of infectious diseases
-
Palacios G, Quan PL, Jabado OJ, Conlan S, Hirschberg DL, Liu Y, Zhai J, Renwick N, Hui J, Hegyi H, Grolla A, Strong JE, Towner JS, Geisbert TW, Jahrling PB, Büchen-Osmond C, Ellerbrok H, Sanchez-Seco MP, Lussier Y, Formenty P, Nichol MST, Feldmann H, Briese T, Lipkin WI. 2007. Panmicrobial oligonucleotide array for diagnosis of infectious diseases. Emerg Infect Dis 13:73-81. http://dx.doi.org/10.3201/eid1301 .060837
-
(2007)
Emerg Infect Dis
, vol.13
, pp. 73-81
-
-
Palacios, G.1
Quan, P.L.2
Jabado, O.J.3
Conlan, S.4
Hirschberg, D.L.5
Liu, Y.6
Zhai, J.7
Renwick, N.8
Hui, J.9
Hegyi, H.10
Grolla, A.11
Strong, J.E.12
Towner, J.S.13
Geisbert, T.W.14
Jahrling, P.B.15
Büchen-Osmond, C.16
Ellerbrok, H.17
Sanchez-Seco, M.P.18
Lussier, Y.19
Formenty, P.20
Nichol, M.S.T.21
Feldmann, H.22
Briese, T.23
Lipkin, W.I.24
more..
-
45
-
-
1842376876
-
Amplification and subtraction methods and their application to the discovery of novel human viruses
-
Muerhoff AS, Leary TP, Desai SM, Mushahwar IK. 1997. Amplification and subtraction methods and their application to the discovery of novel human viruses. J Med Virol 53:96-103. http://dx.doi.org/10.1002 /(SICI)1096-9071(199709)53:1<96::AID-JMV16>3.0.CO;2-V
-
(1997)
J Med Virol
, vol.53
, pp. 96-103
-
-
Muerhoff, A.S.1
Leary, T.P.2
Desai, S.M.3
Mushahwar, I.K.4
-
46
-
-
0027468779
-
Cloning the differences between two genomes
-
Lisitsyn NA, Lisitsyn NM, Wigler M. 1993. Cloning the differences between two genomes. Science 259:946-951
-
(1993)
Science
, vol.259
, pp. 946-951
-
-
Lisitsyn, N.A.1
Lisitsyn, N.M.2
Wigler, M.3
-
47
-
-
0028588064
-
Identification of herpesvirus-like DNA sequences in AIDS-associated Kaposi's sarcoma
-
Chang Y, Cesarman E, Pessin MS, Lee F, Culpepper J, Knowles DM, Moore PS. 1994. Identification of herpesvirus-like DNA sequences in AIDS-associated Kaposi's sarcoma. Science 266:1865-1869. http://dx .doi.org/10.1126/science.7997879
-
(1994)
Science
, vol.266
, pp. 1865-1869
-
-
Chang, Y.1
Cesarman, E.2
Pessin, M.S.3
Lee, F.4
Culpepper, J.5
Knowles, D.M.6
Moore, P.S.7
-
48
-
-
0036479008
-
Identification of foreign gene sequences by transcript filtering against the human genome
-
Weber G, Shendure J, Tanenbaum DM, Church GM, Meyerson M. 2002 Identification of foreign gene sequences by transcript filtering against the human genome. Nat Genet 30:141-142. http://dx.doi.org/10 .1038/ng818
-
(2002)
Nat Genet
, vol.30
, pp. 141-142
-
-
Weber, G.1
Shendure, J.2
Tanenbaum, D.M.3
Church, G.M.4
Meyerson, M.5
-
49
-
-
84973483876
-
Strategies for human tumor virus discoveries: from microscopic observation to digital transcriptome subtraction
-
Mirvish ED, Shuda M. 2016. Strategies for human tumor virus discoveries: from microscopic observation to digital transcriptome subtraction. Front Microbiol 7:676. http://dx.doi.org/10.3389/fmicb.2016 .00676
-
(2016)
Front Microbiol
, vol.7
, pp. 676
-
-
Mirvish, E.D.1
Shuda, M.2
-
50
-
-
39749113080
-
Clonal integration of a polyomavirus in human Merkel cell carcinoma
-
Feng H, Shuda M, Chang Y, Moore PS. 2008. Clonal integration of a polyomavirus in human Merkel cell carcinoma. Science 319:1096-1100
-
(2008)
Science
, vol.319
, pp. 1096-1100
-
-
Feng, H.1
Shuda, M.2
Chang, Y.3
Moore, P.S.4
-
51
-
-
35148898713
-
Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma
-
Feng H, Taylor JL, Benos PV, Newton R, Waddell K, Lucas SB, Chang Y, Moore PS. 2007. Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma. J Virol 81:11332-11340
-
(2007)
J Virol
, vol.81
, pp. 11332-11340
-
-
Feng, H.1
Taylor, J.L.2
Benos, P.V.3
Newton, R.4
Waddell, K.5
Lucas, S.B.6
Chang, Y.7
Moore, P.S.8
-
52
-
-
40449115382
-
A new arenavirus in a cluster of fatal transplant-associated diseases
-
Palacios G, Druce J, Du L, Tran T, Birch C, Briese T, Conlan S, Quan PL, Hui J, Marshall J, Simons JF, Egholm M, Paddock CD, Shieh WJ, Goldsmith CS, Zaki SR, Catton M, Lipkin WI. 2008. A new arenavirus in a cluster of fatal transplant-associated diseases. N Engl J Med 358:991-998 http://dx.doi.org/10.1056/NEJMoa073785
-
(2008)
N Engl J Med
, vol.358
, pp. 991-998
-
-
Palacios, G.1
Druce, J.2
Du, L.3
Tran, T.4
Birch, C.5
Briese, T.6
Conlan, S.7
Quan, P.L.8
Hui, J.9
Marshall, J.10
Simons, J.F.11
Egholm, M.12
Paddock, C.D.13
Shieh, W.J.14
Goldsmith, C.S.15
Zaki, S.R.16
Catton, M.17
Lipkin, W.I.18
-
53
-
-
53049086506
-
Quantitative PCR measurements of the effects of introducing inosines into primers provides guidelines for improved degenerate primer design
-
Zheng L, Gibbs MJ, Rodoni BC. 2008. Quantitative PCR measurements of the effects of introducing inosines into primers provides guidelines for improved degenerate primer design. J Virol Methods 153:97-103. http://dx.doi.org/10.1016/j.jviromet.2008.07.029
-
(2008)
J Virol Methods
, vol.153
, pp. 97-103
-
-
Zheng, L.1
Gibbs, M.J.2
Rodoni, B.C.3
-
54
-
-
0043122986
-
CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design
-
Rose TM, Henikoff JG, Henikoff S. 2003. CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design. Nucleic Acids Res 31:3763-3766. http://dx.doi.org/10.1093/nar/gkg524
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3763-3766
-
-
Rose, T.M.1
Henikoff, J.G.2
Henikoff, S.3
-
55
-
-
0032052770
-
Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences
-
Rose TM, Schultz ER, Henikoff JG, Pietrokovski S, McCallum CM, Henikoff S. 1998. Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. Nucleic Acids Res 26:1628-1635. http://dx.doi.org/10.1093/nar/26.7.1628
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1628-1635
-
-
Rose, T.M.1
Schultz, E.R.2
Henikoff, J.G.3
Pietrokovski, S.4
McCallum, C.M.5
Henikoff, S.6
-
56
-
-
84879689502
-
Sensitive, microliter PCR with consensus degenerate primers for Epstein Barr virus amplification
-
Phaneuf CR, Oh K, Pak N, Saunders DC, Conrardy C, Landers JP, Tong S, Forest CR. 2013. Sensitive, microliter PCR with consensus degenerate primers for Epstein Barr virus amplification. Biomed Microdevices 15:221-231. http://dx.doi.org/10.1007/s10544-012-9720-1
-
(2013)
Biomed Microdevices
, vol.15
, pp. 221-231
-
-
Phaneuf, C.R.1
Oh, K.2
Pak, N.3
Saunders, D.C.4
Conrardy, C.5
Landers, J.P.6
Tong, S.7
Forest, C.R.8
-
57
-
-
84859344092
-
A family-wide RT-PCR assay for detection of paramyxoviruses and application to a large-scale surveillance study
-
van Boheemen S, Bestebroer TM, Verhagen JH, Osterhaus ADME, Pas SD, Herfst S, Fouchier RAM. 2012. A family-wide RT-PCR assay for detection of paramyxoviruses and application to a large-scale surveillance study. PLoS One 7:e34961. http://dx.doi.org/10.1371/journal. pone.0034961
-
(2012)
PLoS One
, vol.7
-
-
van Boheemen, S.1
Bestebroer, T.M.2
Verhagen, J.H.3
Osterhaus, A.D.M.E.4
Pas, S.D.5
Herfst, S.6
Fouchier, R.A.M.7
-
58
-
-
80053133646
-
Design and validation of consensus-degenerate hybrid oligonucleotide primers for broad and sensitive detection of corona-and toroviruses
-
Zlateva KT, Crusio KM, Leontovich AM, Lauber C, Claas E, Kravchenko AA, Spaan WJM, Gorbalenya AE. 2011. Design and validation of consensus-degenerate hybrid oligonucleotide primers for broad and sensitive detection of corona-and toroviruses. J Virol Methods 177:174-183. http://dx.doi.org/10.1016/j.jviromet.2011.08.005
-
(2011)
J Virol Methods
, vol.177
, pp. 174-183
-
-
Zlateva, K.T.1
Crusio, K.M.2
Leontovich, A.M.3
Lauber, C.4
Claas, E.5
Kravchenko, A.A.6
Spaan, W.J.M.7
Gorbalenya, A.E.8
-
59
-
-
84859800217
-
Novel flaviviruses detected in different species of mosquitoes in Spain
-
Vázquez A, Sánchez-Seco M-P, Palacios G, Molero F, Reyes N, Ruiz S, Aranda C, Marqués E, Escosa R, Moreno J, Figuerola J, Tenorio A. 2012 Novel flaviviruses detected in different species of mosquitoes in Spain. Vector Borne Zoonotic Dis 12:223-229. http://dx.doi.org/10 .1089/vbz.2011.0687
-
(2012)
Vector Borne Zoonotic Dis
, vol.12
, pp. 223-229
-
-
Vázquez, A.1
Sánchez-Seco, M.-P.2
Palacios, G.3
Molero, F.4
Reyes, N.5
Ruiz, S.6
Aranda, C.7
Marqués, E.8
Escosa, R.9
Moreno, J.10
Figuerola, J.11
Tenorio, A.12
-
60
-
-
84919458576
-
Comprehensive molecular detection of tick-borne phleboviruses leads to the retrospective identification of taxonomically unassigned bunyaviruses and the discovery of a novel member of the genus phlebovirus
-
Matsuno K, Weisend C, Kajihara M, Matysiak C, Williamson BN, Simuunza M, Mweene AS, Takada A, Tesh RB, Ebihara H. 2015. Comprehensive molecular detection of tick-borne phleboviruses leads to the retrospective identification of taxonomically unassigned bunyaviruses and the discovery of a novel member of the genus phlebovirus. J Virol 89:594-604. http://dx.doi.org/10.1128/JVI.02704-14
-
(2015)
J Virol
, vol.89
, pp. 594-604
-
-
Matsuno, K.1
Weisend, C.2
Kajihara, M.3
Matysiak, C.4
Williamson, B.N.5
Simuunza, M.6
Mweene, A.S.7
Takada, A.8
Tesh, R.B.9
Ebihara, H.10
-
61
-
-
0027910025
-
Genetic identification of a hantavirus associated with an outbreak of acute respiratory illness
-
Nichol ST, Spiropoulou CF, Morzunov S, Rollin PE, Ksiazek TG, Feldmann H, Sanchez A, Childs J, Zaki S, Peters CJ. 1993. Genetic identification of a hantavirus associated with an outbreak of acute respiratory illness. Science 262:914-917. http://dx.doi.org/10.1126/science.8235615
-
(1993)
Science
, vol.262
, pp. 914-917
-
-
Nichol, S.T.1
Spiropoulou, C.F.2
Morzunov, S.3
Rollin, P.E.4
Ksiazek, T.G.5
Feldmann, H.6
Sanchez, A.7
Childs, J.8
Zaki, S.9
Peters, C.J.10
-
62
-
-
85042222872
-
Sensitive multiplex real-time RT-qPCR assay for the detection of filoviruses
-
Dedkov VG, Magassouba N, Safonova MV, Bodnev SA, Pyankov OV, Camara J, Sylla B, Agafonov AP, Maleev VV, Shipulin GA. 2018. Sensitive multiplex real-time RT-qPCR assay for the detection of filoviruses. Heal Secur 16:14-21
-
(2018)
Heal Secur
, vol.16
, pp. 14-21
-
-
Dedkov, V.G.1
Magassouba, N.2
Safonova, M.V.3
Bodnev, S.A.4
Pyankov, O.V.5
Camara, J.6
Sylla, B.7
Agafonov, A.P.8
Maleev, V.V.9
Shipulin, G.A.10
-
63
-
-
85042628870
-
Evaluation of a new multiplex real-time PCR assay for detecting gastroenteritis-causing viruses in stool samples
-
Hyun J, Ko DH, Lee SK, Kim HS, Kim JS, Song W, Kim HS. 2018. Evaluation of a new multiplex real-time PCR assay for detecting gastroenteritis-causing viruses in stool samples. Ann Lab Med 38:220-225
-
(2018)
Ann Lab Med
, vol.38
, pp. 220-225
-
-
Hyun, J.1
Ko, D.H.2
Lee, S.K.3
Kim, H.S.4
Kim, J.S.5
Song, W.6
Kim, H.S.7
-
64
-
-
85042236047
-
Establishment of a multiplex real-time RT-PCR assay for rapid identification of H6 subtype avian influenza viruses
-
Yang F, Wu H, Liu F, Lu X, Peng X, Wu N. 2018. Establishment of a multiplex real-time RT-PCR assay for rapid identification of H6 subtype avian influenza viruses. Arch Virol 163:1671-1675. http://dx.doi.org/10 .1007/s00705-018-3773-2
-
(2018)
Arch Virol
, vol.163
, pp. 1671-1675
-
-
Yang, F.1
Wu, H.2
Liu, F.3
Lu, X.4
Peng, X.5
Wu, N.6
-
65
-
-
77955094384
-
Detection of pandemic influenza A H1N1 virus by multiplex reverse transcription-PCR with a GeXP analyzer
-
Qin M, Wang DY, Huang F, Nie K, Qu M, Wang M, Shu YL, Ma XJ. 2010 Detection of pandemic influenza A H1N1 virus by multiplex reverse transcription-PCR with a GeXP analyzer. J Virol Methods 168:255-258. http://dx.doi.org/10.1016/j.jviromet.2010.04.031
-
(2010)
J Virol Methods
, vol.168
, pp. 255-258
-
-
Qin, M.1
Wang, D.Y.2
Huang, F.3
Nie, K.4
Qu, M.5
Wang, M.6
Shu, Y.L.7
Ma, X.J.8
-
66
-
-
85042065393
-
A one-step multiplex real-time RT-PCR for the universal detection of all currently known CCHFV genotypes
-
Sas MA, Vina-Rodriguez A, Mertens M, Eiden M, Emmerich P, Chaintoutis SC, Mirazimi A, Groschup MH. 2018. A one-step multiplex real-time RT-PCR for the universal detection of all currently known CCHFV genotypes. J Virol Methods 255:38-43. http://dx.doi.org/10 .1016/j.jviromet.2018.01.013
-
(2018)
J Virol Methods
, vol.255
, pp. 38-43
-
-
Sas, M.A.1
Vina-Rodriguez, A.2
Mertens, M.3
Eiden, M.4
Emmerich, P.5
Chaintoutis, S.C.6
Mirazimi, A.7
Groschup, M.H.8
-
67
-
-
84902298201
-
Methods in virus diagnostics: from ELISA to next generation sequencing
-
Boonham N, Kreuze J, Winter S, van der Vlugt R, Bergervoet J, Tomlinson J, Mumford R. 2014. Methods in virus diagnostics: from ELISA to next generation sequencing. Virus Res 186:20-31. http://dx.doi .org/10.1016/j.virusres.2013.12.007
-
(2014)
Virus Res
, vol.186
, pp. 20-31
-
-
Boonham, N.1
Kreuze, J.2
Winter, S.3
van der Vlugt, R.4
Bergervoet, J.5
Tomlinson, J.6
Mumford, R.7
-
68
-
-
0037131204
-
Detection of HIV-1 subtypes, recombinants, and dual infections in east Africa by a multi-region hybridization assay
-
Hoelscher M, Dowling WE, Sanders-Buell E, Carr JK, Harris ME, Thomschke A, Robb ML, Birx DL, McCutchan FE. 2002. Detection of HIV-1 subtypes, recombinants, and dual infections in east Africa by a multi-region hybridization assay. AIDS 16:2055-2064. http://dx.doi.org /10.1097/00002030-200210180-00011
-
(2002)
AIDS
, vol.16
, pp. 2055-2064
-
-
Hoelscher, M.1
Dowling, W.E.2
Sanders-Buell, E.3
Carr, J.K.4
Harris, M.E.5
Thomschke, A.6
Robb, M.L.7
Birx, D.L.8
McCutchan, F.E.9
-
69
-
-
33846088566
-
Distinguishing molecular forms of HIV-1 in Asia with a highthroughput, fluorescent genotyping assay, MHAbce v.2
-
Kijak GH, Tovanabutra S, Sanders-Buell E, Watanaveeradej V, de Souza MS, Nelson KE, Ketsararat V, Gulgolgarn V, Wera-arpachai M, Sriplienchan S, Khamboonrueng C, Birx DL, Robb ML, McCutchan FE. 2007. Distinguishing molecular forms of HIV-1 in Asia with a highthroughput, fluorescent genotyping assay, MHAbce v.2. Virology 358: 178-191. http://dx.doi.org/10.1016/j.virol.2006.07.055
-
(2007)
Virology
, vol.358
, pp. 178-191
-
-
Kijak, G.H.1
Tovanabutra, S.2
Sanders-Buell, E.3
Watanaveeradej, V.4
de Souza, M.S.5
Nelson, K.E.6
Ketsararat, V.7
Gulgolgarn, V.8
Wera-arpachai, M.9
Sriplienchan, S.10
Khamboonrueng, C.11
Birx, D.L.12
Robb, M.L.13
McCutchan, F.E.14
-
70
-
-
84872931609
-
Novel multiregion hybridization assay for the identification of the most prevalent genetic forms of the human immunodeficiency virus type 1 circulating in Portugal
-
Freitas FB, Esteves A, Piedade J, Parreira R. 2013. Novel multiregion hybridization assay for the identification of the most prevalent genetic forms of the human immunodeficiency virus type 1 circulating in Portugal. AIDS Res Hum Retroviruses 29:318-328
-
(2013)
AIDS Res Hum Retroviruses
, vol.29
, pp. 318-328
-
-
Freitas, F.B.1
Esteves, A.2
Piedade, J.3
Parreira, R.4
-
71
-
-
84871899499
-
A novel multiregion hybridization assay reveals high frequency of dual inter-subtype infections among HIV-positive individuals in Cameroon, West Central Africa
-
Vidal N, Diop H, Montavon C, Butel C, Bosch S, Ngole EM, Touré-Kane C, Mboup S, Delaporte E, Peeters M. 2013. A novel multiregion hybridization assay reveals high frequency of dual inter-subtype infections among HIV-positive individuals in Cameroon, West Central Africa. Infect Genet Evol 14:73-82. http://dx.doi.org/10.1016/j.meegid.2012.11.017
-
(2013)
Infect Genet Evol
, vol.14
, pp. 73-82
-
-
Vidal, N.1
Diop, H.2
Montavon, C.3
Butel, C.4
Bosch, S.5
Ngole, E.M.6
Touré-Kane, C.7
Mboup, S.8
Delaporte, E.9
Peeters, M.10
-
72
-
-
84897550274
-
Isothermal amplified detection of DNA and RNA
-
Yan L, Zhou J, Zheng Y, Gamson AS, Roembke BT, Nakayama S, Sintim HO. 2014. Isothermal amplified detection of DNA and RNA. Mol Biosyst 10:970-1003. http://dx.doi.org/10.1039/c3mb70304e
-
(2014)
Mol Biosyst
, vol.10
, pp. 970-1003
-
-
Yan, L.1
Zhou, J.2
Zheng, Y.3
Gamson, A.S.4
Roembke, B.T.5
Nakayama, S.6
Sintim, H.O.7
-
73
-
-
0036182163
-
Characteristics and applications of nucleic acid sequence-based amplification (NASBA)
-
Deiman B, van Aarle P, Sillekens P. 2002. Characteristics and applications of nucleic acid sequence-based amplification (NASBA). Mol Biotechnol 20:163-179. http://dx.doi.org/10.1385/MB:20:2:163
-
(2002)
Mol Biotechnol
, vol.20
, pp. 163-179
-
-
Deiman, B.1
van Aarle, P.2
Sillekens, P.3
-
74
-
-
84900474486
-
Detection of high-risk human papillomavirus type 16 and 18 using isothermal helicasedependent amplification
-
Barbieri D, Venturoli S, Rösl F, Rincon-Orozco B. 2014. Detection of high-risk human papillomavirus type 16 and 18 using isothermal helicasedependent amplification. Diagn Microbiol Infect Dis 79:178-182. http:// dx.doi.org/10.1016/j.diagmicrobio.2014.02.012
-
(2014)
Diagn Microbiol Infect Dis
, vol.79
, pp. 178-182
-
-
Barbieri, D.1
Venturoli, S.2
Rösl, F.3
Rincon-Orozco, B.4
-
75
-
-
84867380725
-
Development and comparison of a rapid isothermal nucleic acid amplification test for typing of herpes simplex virus types 1 and 2 on a portable fluorescence detector
-
Tong Y, McCarthy K, Kong H, Lemieux B. 2012. Development and comparison of a rapid isothermal nucleic acid amplification test for typing of herpes simplex virus types 1 and 2 on a portable fluorescence detector. JMolDiagn 14:569-576. http://dx.doi.org/10.1016/j.jmoldx.2012.05.005
-
(2012)
JMolDiagn
, vol.14
, pp. 569-576
-
-
Tong, Y.1
McCarthy, K.2
Kong, H.3
Lemieux, B.4
-
76
-
-
84992089262
-
A field-deployable reverse transcription recombinase polymerase amplification assay for rapid detection of the Chikungunya virus
-
Patel P, Abd El Wahed A, Faye O, Prüger P, Kaiser M, Thaloengsok S, Ubol S, Sakuntabhai A, Leparc-Goffart I, Hufert FT, Sall AA, Weidmann M, Niedrig M. 2016. A field-deployable reverse transcription recombinase polymerase amplification assay for rapid detection of the Chikungunya virus. PLoS Negl Trop Dis 10:e0004953. http://dx.doi.org /10.1371/journal.pntd.0004953
-
(2016)
PLoS Negl Trop Dis
, vol.10
-
-
Patel, P.1
Abd El Wahed, A.2
Faye, O.3
Prüger, P.4
Kaiser, M.5
Thaloengsok, S.6
Ubol, S.7
Sakuntabhai, A.8
Leparc-Goffart, I.9
Hufert, F.T.10
Sall, A.A.11
Weidmann, M.12
Niedrig, M.13
-
77
-
-
85032618818
-
A recombinase polymerase amplification assay for rapid detection of Crimean-Congo haemorrhagic fever virus infection
-
Bonney LC, Watson RJ, Afrough B, Mullojonova M, Dzhuraeva V, Tishkova F, Hewson R. 2017. A recombinase polymerase amplification assay for rapid detection of Crimean-Congo haemorrhagic fever virus infection. PLoS Negl Trop Dis 11:e0006013. http://dx.doi.org/10.1371 /journal.pntd.0006013
-
(2017)
PLoS Negl Trop Dis
, vol.11
-
-
Bonney, L.C.1
Watson, R.J.2
Afrough, B.3
Mullojonova, M.4
Dzhuraeva, V.5
Tishkova, F.6
Hewson, R.7
-
78
-
-
84938718993
-
Development of reverse transcription recombinase polymerase amplification assay for avian influenza H5N1 HA gene detection
-
Yehia N, Arafa AS, Abd El Wahed A, El-Sanousi AA, Weidmann M, Shalaby MA. 2015. Development of reverse transcription recombinase polymerase amplification assay for avian influenza H5N1 HA gene detection. J Virol Methods 223:45-49. http://dx.doi.org/10.1016/j.jviromet .2015.07.011
-
(2015)
J Virol Methods
, vol.223
, pp. 45-49
-
-
Yehia, N.1
Arafa, A.S.2
Abd El Wahed, A.3
El-Sanousi, A.A.4
Weidmann, M.5
Shalaby, M.A.6
-
79
-
-
84907482392
-
Non-instrumented incubation of a recombinase polymerase amplification assay for the rapid and sensitive detection of proviral HIV-1 DNA
-
Lillis L, Lehman D, Singhal MC, Cantera J, Singleton J, Labarre P, Toyama A, Piepenburg O, Parker M, Wood R, Overbaugh J, Boyle DS. 2014. Non-instrumented incubation of a recombinase polymerase amplification assay for the rapid and sensitive detection of proviral HIV-1 DNA. PLoS One 9:e108189. http://dx.doi.org/10.1371/journal.pone .0108189
-
(2014)
PLoS One
, vol.9
-
-
Lillis, L.1
Lehman, D.2
Singhal, M.C.3
Cantera, J.4
Singleton, J.5
Labarre, P.6
Toyama, A.7
Piepenburg, O.8
Parker, M.9
Wood, R.10
Overbaugh, J.11
Boyle, D.S.12
-
80
-
-
84942295554
-
Reverse transcription recombinase polymerase amplification assay for the detection of Middle East respiratory syndrome coronavirus
-
Abd El Wahed A, Patel P, Heidenreich D, Hufert FT, Weidmann M. 2013 Reverse transcription recombinase polymerase amplification assay for the detection of Middle East respiratory syndrome coronavirus. PLoS Curr 5:ecurrents.outbreaks.62df1c7c75ffc96cd59034531e2e8364
-
(2013)
PLoS Curr
, vol.5
-
-
Abd El Wahed, A.1
Patel, P.2
Heidenreich, D.3
Hufert, F.T.4
Weidmann, M.5
-
81
-
-
84934922809
-
Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects
-
Notomi T, Mori Y, Tomita N, Kanda H. 2015. Loop-mediated isothermal amplification (LAMP): principle, features, and future prospects. J Microbiol 53:1-5. http://dx.doi.org/10.1007/s12275-015-4656-9
-
(2015)
J Microbiol
, vol.53
, pp. 1-5
-
-
Notomi, T.1
Mori, Y.2
Tomita, N.3
Kanda, H.4
-
82
-
-
84856970409
-
Detection of human enterovirus 71 reverse transcription loop-mediated isothermal amplification (RT-LAMP)
-
Yaqing H, Wenping Z, Zhiyi Y, Xionghu W, Shouyi Y, Hong Y, Yingchun D, Guifang H. 2012. Detection of human enterovirus 71 reverse transcription loop-mediated isothermal amplification (RT-LAMP). Lett Appl Microbiol 54:233-239. http://dx.doi.org/10.1111/j.1472-765X .2011.03198.x
-
(2012)
Lett Appl Microbiol
, vol.54
, pp. 233-239
-
-
Yaqing, H.1
Wenping, Z.2
Zhiyi, Y.3
Xionghu, W.4
Shouyi, Y.5
Hong, Y.6
Yingchun, D.7
Guifang, H.8
-
83
-
-
85018485320
-
Rapid detection of all known ebolavirus species by reverse transcriptionloop-mediated isothermal amplification (RT-LAMP)
-
Oloniniyi OK, Kurosaki Y, Miyamoto H, Takada A, Yasuda J. 2017. Rapid detection of all known ebolavirus species by reverse transcriptionloop-mediated isothermal amplification (RT-LAMP). J Virol Methods 246:8-14. http://dx.doi.org/10.1016/j.jviromet.2017.03.011
-
(2017)
J Virol Methods
, vol.246
, pp. 8-14
-
-
Oloniniyi, O.K.1
Kurosaki, Y.2
Miyamoto, H.3
Takada, A.4
Yasuda, J.5
-
84
-
-
84899831457
-
Development of a reverse transcription loop-mediated isothermal amplification assay for the rapid diagnosis of avian influenza A (H7N9) virus infection
-
Nakauchi M, Takayama I, Takahashi H, Tashiro M, Kageyama T. 2014 Development of a reverse transcription loop-mediated isothermal amplification assay for the rapid diagnosis of avian influenza A (H7N9) virus infection. J Virol Methods 204:101-104. http://dx.doi.org/10.1016 /j.jviromet.2014.03.028
-
(2014)
J Virol Methods
, vol.204
, pp. 101-104
-
-
Nakauchi, M.1
Takayama, I.2
Takahashi, H.3
Tashiro, M.4
Kageyama, T.5
-
85
-
-
85042658564
-
A multiplexed RT-LAMP assay for detection of group M HIV-1 in plasma or whole blood
-
Curtis KA, Morrison D, Rudolph DL, Shankar A, Bloomfield LSP, Switzer WM, Owen SM. 2018. A multiplexed RT-LAMP assay for detection of group M HIV-1 in plasma or whole blood. J Virol Methods 255:91-97. http://dx.doi.org/10.1016/j.jviromet.2018.02.012
-
(2018)
J Virol Methods
, vol.255
, pp. 91-97
-
-
Curtis, K.A.1
Morrison, D.2
Rudolph, D.L.3
Shankar, A.4
Bloomfield, L.S.P.5
Switzer, W.M.6
Owen, S.M.7
-
86
-
-
85041846762
-
Assessing the performance of a loop mediated isothermal amplification (LAMP) assay for the detection and subtyping of high-risk suptypes [sic] of human papilloma virus (HPV) for oropharyngeal squamous cell carcinoma (OPSCC) without DNA purification
-
Rohatensky MG, Livingstone DM, Mintchev P, Barnes HK, Nakoneshny SC, Demetrick DJ, Dort JC, van Marle G. 2018. Assessing the performance of a loop mediated isothermal amplification (LAMP) assay for the detection and subtyping of high-risk suptypes [sic] of human papilloma virus (HPV) for oropharyngeal squamous cell carcinoma (OPSCC) without DNA purification. BMC Cancer 18:166. http://dx.doi .org/10.1186/s12885-018-4087-1
-
(2018)
BMC Cancer
, vol.18
, pp. 166
-
-
Rohatensky, M.G.1
Livingstone, D.M.2
Mintchev, P.3
Barnes, H.K.4
Nakoneshny, S.C.5
Demetrick, D.J.6
Dort, J.C.7
van Marle, G.8
-
87
-
-
85041422788
-
Detection of Zika virus using reversetranscription LAMP coupled with reverse dot blot analysis in saliva
-
Sabalza M, Yasmin R, Barber CA, Castro T,Malamud D, KimBJ, Zhu H, Montagna RA, Abrams WR. 2018. Detection of Zika virus using reversetranscription LAMP coupled with reverse dot blot analysis in saliva. PLoS One 13:e0192398. http://dx.doi.org/10.1371/journal.pone.0192398
-
(2018)
PLoS One
, vol.13
-
-
Sabalza, M.1
Yasmin, R.2
Barber, C.A.3
Castro, T.4
Malamud, D.5
Kim, B.J.6
Zhu, H.7
Montagna, R.A.8
Abrams, W.R.9
-
88
-
-
84938690461
-
Development and evaluation of a loop-mediated isothermal amplification assay for the detection of adenovirus 40 and 41
-
Ziros PG, Kokkinos PA, Allard A, Vantarakis A. 2015. Development and evaluation of a loop-mediated isothermal amplification assay for the detection of adenovirus 40 and 41. Food Environ Virol 7:276-285. http:// dx.doi.org/10.1007/s12560-015-9182-8
-
(2015)
Food Environ Virol
, vol.7
, pp. 276-285
-
-
Ziros, P.G.1
Kokkinos, P.A.2
Allard, A.3
Vantarakis, A.4
-
89
-
-
0026290379
-
Sequence-independent, single-primer amplification (SISPA) of complex DNA populations
-
Reyes GR, Kim JP. 1991. Sequence-independent, single-primer amplification (SISPA) of complex DNA populations. Mol Cell Probes 5:473-481 http://dx.doi.org/10.1016/S0890-8508(05)80020-9
-
(1991)
Mol Cell Probes
, vol.5
, pp. 473-481
-
-
Reyes, G.R.1
Kim, J.P.2
-
90
-
-
0026590701
-
Cloning of noncultivatable human rotavirus by single primer amplification
-
Lambden PR, Cooke SJ, Caul EO, Clarke IN. 1992. Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66:1817-1822
-
(1992)
J Virol
, vol.66
, pp. 1817-1822
-
-
Lambden, P.R.1
Cooke, S.J.2
Caul, E.O.3
Clarke, I.N.4
-
91
-
-
0025736156
-
The isolation and characterization of a Norwalk virus-specific cDNA
-
Matsui SM, Kim JP, Greenberg HB, Su W, Sun Q, Johnson PC, DuPont HL, Oshiro LS, Reyes GR. 1991. The isolation and characterization of a Norwalk virus-specific cDNA. J Clin Invest 87:1456-1461. http://dx.doi.org/10.1172/JCI115152
-
(1991)
J Clin Invest
, vol.87
, pp. 1456-1461
-
-
Matsui, S.M.1
Kim, J.P.2
Greenberg, H.B.3
Su, W.4
Sun, Q.5
Johnson, P.C.6
DuPont, H.L.7
Oshiro, L.S.8
Reyes, G.R.9
-
92
-
-
0027405971
-
Cloning and characterization of human astrovirus immunoreactive epitopes
-
Matsui SM, Kim JP, Greenberg HB, Young LM, Smith LS, Lewis TL, Herrmann JE, Blacklow NR, Dupuis K, Reyes GR. 1993. Cloning and characterization of human astrovirus immunoreactive epitopes. J Virol 67: 1712-1715
-
(1993)
J Virol
, vol.67
, pp. 1712-1715
-
-
Matsui, S.M.1
Kim, J.P.2
Greenberg, H.B.3
Young, L.M.4
Smith, L.S.5
Lewis, T.L.6
Herrmann, J.E.7
Blacklow, N.R.8
Dupuis, K.9
Reyes, G.R.10
-
93
-
-
11144353592
-
Identification of a new human coronavirus
-
van der Hoek L, Pyrc K, Jebbink MF, Vermeulen-Oost W, Berkhout RJM, Wolthers KC, Wertheim-van Dillen PME, Kaandorp J, Spaargaren J, Berkhout B. 2004. Identification of a new human coronavirus. Nat Med 10:368-373. http://dx.doi.org/10.1038/nm1024
-
(2004)
Nat Med
, vol.10
, pp. 368-373
-
-
van der Hoek, L.1
Pyrc, K.2
Jebbink, M.F.3
Vermeulen-Oost, W.4
Berkhout, R.J.M.5
Wolthers, K.C.6
Wertheim-van Dillen, P.M.E.7
Kaandorp, J.8
Spaargaren, J.9
Berkhout, B.10
-
94
-
-
41149110926
-
Identification of a contemporary human parechovirus type 1 by VIDISCA and characterisation of its full genome
-
de Souza Luna LK, Baumgarte S, Grywna K, Panning M, Drexler JF, Drosten C. 2008. Identification of a contemporary human parechovirus type 1 by VIDISCA and characterisation of its full genome. Virol J 5:26. http://dx.doi.org/10.1186/1743-422X-5-26
-
(2008)
Virol J
, vol.5
, pp. 26
-
-
de Souza Luna, L.K.1
Baumgarte, S.2
Grywna, K.3
Panning, M.4
Drexler, J.F.5
Drosten, C.6
-
95
-
-
83155190998
-
Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses
-
Kim KH, Bae JW. 2011. Amplification methods bias metagenomic libraries of uncultured single-stranded and double-stranded DNA viruses. Appl Environ Microbiol 77:7663-7668. http://dx.doi.org/10.1128/AEM .00289-11
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7663-7668
-
-
Kim, K.H.1
Bae, J.W.2
-
96
-
-
84884625714
-
The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing
-
Rosseel T, Van Borm S, Vandenbussche F, Hoffmann B, van den Berg T, Beer M, Höper D. 2013. The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing. PLoS One 8:e76144. http://dx.doi .org/10.1371/journal.pone.0076144
-
(2013)
PLoS One
, vol.8
-
-
Rosseel, T.1
Van Borm, S.2
Vandenbussche, F.3
Hoffmann, B.4
van den Berg, T.5
Beer, M.6
Höper, D.7
-
97
-
-
84883207705
-
The effect of preprocessing by sequence-independent, single-primer amplification (SISPA) on metagenomic detection of viruses
-
Karlsson OE, Belák S, Granberg F. 2013. The effect of preprocessing by sequence-independent, single-primer amplification (SISPA) on metagenomic detection of viruses. Biosecur Bioterror 11(Suppl 1):S227-S234. http://dx.doi.org/10.1089/bsp.2013.0008
-
(2013)
Biosecur Bioterror
, vol.11
, pp. S227-S234
-
-
Karlsson, O.E.1
Belák, S.2
Granberg, F.3
-
98
-
-
28644451508
-
Species-independent detection of RNA virus by representational difference analysis using non-ribosomal hexanucleotides for reverse transcription
-
Endoh D, Mizutani T, Kirisawa R, Maki Y, Saito H, Kon Y, Morikawa S, Hayashi M. 2005. Species-independent detection of RNA virus by representational difference analysis using non-ribosomal hexanucleotides for reverse transcription. Nucleic Acids Res 33:e65. http://dx .doi.org/10.1093/nar/gni064
-
(2005)
Nucleic Acids Res
, vol.33
, pp. e65
-
-
Endoh, D.1
Mizutani, T.2
Kirisawa, R.3
Maki, Y.4
Saito, H.5
Kon, Y.6
Morikawa, S.7
Hayashi, M.8
-
99
-
-
79551505435
-
A sensitive assay for virus discovery in respiratory clinical samples
-
de Vries M, Deijs M, Canuti M, van Schaik BDC, Faria NR, van de Garde MDB, Jachimowski LCM, Jebbink MF, Jakobs M, Luyf ACM, Coenjaerts FEJ, Claas ECJ, Molenkamp R, Koekkoek SM, Lammens C, Leus F, Goossens H, Ieven M, Baas F, van der Hoek L. 2011. A sensitive assay for virus discovery in respiratory clinical samples. PLoS One 6: e16118. http://dx.doi.org/10.1371/journal.pone.0016118
-
(2011)
PLoS One
, vol.6
-
-
de Vries, M.1
Deijs, M.2
Canuti, M.3
van Schaik, B.D.C.4
Faria, N.R.5
van Garde, M.D.B.6
Jachimowski, L.C.M.7
Jebbink, M.F.8
Jakobs, M.9
Luyf, A.C.M.10
Coenjaerts, F.E.J.11
Claas, E.C.J.12
Molenkamp, R.13
Koekkoek, S.M.14
Lammens, C.15
Leus, F.16
Goossens, H.17
Ieven, M.18
Baas, F.19
van der Hoek, L.20
more..
-
100
-
-
0026704614
-
A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA
-
Froussard P. 1992. A random-PCR method (rPCR) to construct whole cDNA library from low amounts of RNA. Nucleic Acids Res 20:2900. http://dx.doi.org/10.1093/nar/20.11.2900
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 2900
-
-
Froussard, P.1
-
101
-
-
1942533454
-
A previously undescribed coronavirus associated with respiratory disease in humans
-
Fouchier RAM, Hartwig NG, Bestebroer TM, Niemeyer B, de Jong JC, Simon JH, Osterhaus ADME. 2004. A previously undescribed coronavirus associated with respiratory disease in humans. Proc Natl Acad Sci U S A 101:6212-6216. http://dx.doi.org/10.1073/pnas.0400762101
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 6212-6216
-
-
Fouchier, R.A.M.1
Hartwig, N.G.2
Bestebroer, T.M.3
Niemeyer, B.4
de Jong, J.C.5
Simon, J.H.6
Osterhaus, A.D.M.E.7
-
102
-
-
44449096584
-
Novel computational methods for increasing PCR primer design effectiveness in directed sequencing
-
Li K, Brownley A, Stockwell TB, Beeson K, McIntosh TC, Busam D, Ferriera S, Murphy S, Levy S. 2008. Novel computational methods for increasing PCR primer design effectiveness in directed sequencing. BMC Bioinformatics 9:191. http://dx.doi.org/10.1186/1471-2105-9-191
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 191
-
-
Li, K.1
Brownley, A.2
Stockwell, T.B.3
Beeson, K.4
McIntosh, T.C.5
Busam, D.6
Ferriera, S.7
Murphy, S.8
Levy, S.9
-
103
-
-
24644516529
-
Cloning of a human parvovirus by molecular screening of respiratory tract samples
-
Allander T, Tammi MT, Eriksson M, Bjerkner A, Tiveljung-Lindell A, Andersson B. 2005. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci U S A 102: 12891-12896. http://dx.doi.org/10.1073/pnas.0504666102
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 12891-12896
-
-
Allander, T.1
Tammi, M.T.2
Eriksson, M.3
Bjerkner, A.4
Tiveljung-Lindell, A.5
Andersson, B.6
-
104
-
-
34247158281
-
Identification of a third human polyomavirus
-
Allander T, Andreasson K, Gupta S, Bjerkner A, Bogdanovic G, Persson MAA, Dalianis T, Ramqvist T, Andersson B. 2007. Identification of a third human polyomavirus. J Virol 81:4130-4136. http://dx.doi.org /10.1128/JVI.00028-07
-
(2007)
J Virol
, vol.81
, pp. 4130-4136
-
-
Allander, T.1
Andreasson, K.2
Gupta, S.3
Bjerkner, A.4
Bogdanovic, G.5
Persson, M.A.A.6
Dalianis, T.7
Ramqvist, T.8
Andersson, B.9
-
105
-
-
70350515938
-
Identification of a novel human gammapapillomavirus species
-
Li L, Barry P, Yeh E, Glaser C, Schnurr D, Delwart E. 2009. Identification of a novel human gammapapillomavirus species. J Gen Virol 90:2413-2417. http://dx.doi.org/10.1099/vir.0.012344-0
-
(2009)
J Gen Virol
, vol.90
, pp. 2413-2417
-
-
Li, L.1
Barry, P.2
Yeh, E.3
Glaser, C.4
Schnurr, D.5
Delwart, E.6
-
106
-
-
79952306108
-
Random PCR and ultracentrifugation increases sensitivity and throughput of VIDISCA for screening of pathogens in clinical specimens
-
Tan V, Van Doorn HR, Van der Hoek L, Minh Hien V, Jebbink MF, Quang Ha D, Farrar J, Van Vinh Chau N, de Jong MD. 2011. Random PCR and ultracentrifugation increases sensitivity and throughput of VIDISCA for screening of pathogens in clinical specimens. J Infect Dev Ctries 5:142-148. http://dx.doi.org/10.3855/jidc.1087
-
(2011)
J Infect Dev Ctries
, vol.5
, pp. 142-148
-
-
Tan, V.1
Van Doorn, H.R.2
Van der Hoek, L.3
Minh Hien, V.4
Jebbink, M.F.5
Quang Ha, D.6
Farrar, J.7
Van Vinh Chau, N.8
de Jong, M.D.9
-
107
-
-
39849084772
-
Viral genome sequencing by random priming methods
-
Djikeng A, Halpin R, Kuzmickas R, Depasse J, Feldblyum J, Sengamalay N, Afonso C, Zhang X, Anderson NG, Ghedin E, Spiro DJ. 2008. Viral genome sequencing by random priming methods. BMC Genomics 9:5. http://dx.doi.org/10.1186/1471-2164-9-5
-
(2008)
BMC Genomics
, vol.9
, pp. 5
-
-
Djikeng, A.1
Halpin, R.2
Kuzmickas, R.3
Depasse, J.4
Feldblyum, J.5
Sengamalay, N.6
Afonso, C.7
Zhang, X.8
Anderson, N.G.9
Ghedin, E.10
Spiro, D.J.11
-
108
-
-
83755186199
-
A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing
-
Daly GM, Bexfield N, Heaney J, Stubbs S, Mayer AP, Palser A, Kellam P, Drou N, Caccamo M, Tiley L, Alexander GJM, Bernal W, Heeney JL. 2011. A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing. PLoS One 6:e28879. http://dx.doi.org/10.1371/journal.pone.0028879
-
(2011)
PLoS One
, vol.6
-
-
Daly, G.M.1
Bexfield, N.2
Heaney, J.3
Stubbs, S.4
Mayer, A.P.5
Palser, A.6
Kellam, P.7
Drou, N.8
Caccamo, M.9
Tiley, L.10
Alexander, G.J.M.11
Bernal, W.12
Heeney, J.L.13
-
109
-
-
84859474927
-
Random amplification and pyrosequencing for identification of novel viral genome sequences
-
Hang J, Forshey BM, Kochel TJ, Li T, Solórzano VF, Halsey ES, Kuschner RA. 2012. Random amplification and pyrosequencing for identification of novel viral genome sequences. J Biomol Tech 23:4-10. http://dx.doi.org/10.7171/jbt.12-2301-001
-
(2012)
J Biomol Tech
, vol.23
, pp. 4-10
-
-
Hang, J.1
Forshey, B.M.2
Kochel, T.J.3
Li, T.4
Solórzano, V.F.5
Halsey, E.S.6
Kuschner, R.A.7
-
110
-
-
84896135282
-
Simultaneous rapid sequencing of multiple RNA virus genomes
-
Neill JD, Bayles DO, Ridpath JF. 2014. Simultaneous rapid sequencing of multiple RNA virus genomes. J Virol Methods 201:68-72. http://dx.doi.org/10.1016/j.jviromet.2014.02.016
-
(2014)
J Virol Methods
, vol.201
, pp. 68-72
-
-
Neill, J.D.1
Bayles, D.O.2
Ridpath, J.F.3
-
111
-
-
65449151413
-
Rolling-circle amplification of viral DNA genomes using phi29 polymerase
-
Johne R, Müller H, Rector A, van Ranst M, Stevens H. 2009. Rolling-circle amplification of viral DNA genomes using phi29 polymerase. Trends Microbiol 17:205-211. http://dx.doi.org/10.1016/j.tim.2009 .02.004
-
(2009)
Trends Microbiol
, vol.17
, pp. 205-211
-
-
Johne, R.1
Müller, H.2
Rector, A.3
van Ranst, M.4
Stevens, H.5
-
112
-
-
84934435503
-
Whole genome amplification with Phi29 DNA polymerase to enable genetic or genomic analysis of samples of low DNA yield
-
Silander K, Saarela J. 2008. Whole genome amplification with Phi29 DNA polymerase to enable genetic or genomic analysis of samples of low DNA yield. Methods Mol Biol 439:1-18. http://dx.doi.org/10.1007/978-1-59745-188-8_1
-
(2008)
Methods Mol Biol
, vol.439
, pp. 1-18
-
-
Silander, K.1
Saarela, J.2
-
113
-
-
79952973319
-
Single virus genomics: a new tool for virus discovery
-
Allen LZ, Ishoey T, Novotny MA, McLean JS, Lasken RS, Williamson SJ. 2011. Single virus genomics: a new tool for virus discovery. PLoS One 6:e17722. http://dx.doi.org/10.1371/journal.pone.0017722
-
(2011)
PLoS One
, vol.6
-
-
Allen, L.Z.1
Ishoey, T.2
Novotny, M.A.3
McLean, J.S.4
Lasken, R.S.5
Williamson, S.J.6
-
114
-
-
18344396798
-
Comprehensive human genome amplification using multiple displacement amplification
-
Dean FB, Hosono S, Fang L, Wu X, Faruqi AF, Bray-Ward P, Sun Z, Zong Q, Du Y, Du J, Driscoll M, Song W, Kingsmore SF, Egholm M, Lasken RS. 2002. Comprehensive human genome amplification using multiple displacement amplification. Proc Natl Acad Sci U S A 99:5261-5266 http://dx.doi.org/10.1073/pnas.082089499
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 5261-5266
-
-
Dean, F.B.1
Hosono, S.2
Fang, L.3
Wu, X.4
Faruqi, A.F.5
Bray-Ward, P.6
Sun, Z.7
Zong, Q.8
Du, Y.9
Du, J.10
Driscoll, M.11
Song, W.12
Kingsmore, S.F.13
Egholm, M.14
Lasken, R.S.15
-
115
-
-
2342599124
-
A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification
-
Rector A, Tachezy R, Van Ranst M. 2004. A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification. J Virol 78:4993-4998. http:// dx.doi.org/10.1128/JVI.78.10.4993-4998.2004
-
(2004)
J Virol
, vol.78
, pp. 4993-4998
-
-
Rector, A.1
Tachezy, R.2
Van Ranst, M.3
-
116
-
-
79955752559
-
Possible cross-species transmission of circoviruses and cycloviruses among farm animals
-
Li L, Shan T, Soji OB, Alam MM, Kunz TH, Zaidi SZ, Delwart E. 2011 Possible cross-species transmission of circoviruses and cycloviruses among farm animals. J Gen Virol 92:768-772. http://dx.doi.org/10.1099 /vir.0.028704-0
-
(2011)
J Gen Virol
, vol.92
, pp. 768-772
-
-
Li, L.1
Shan, T.2
Soji, O.B.3
Alam, M.M.4
Kunz, T.H.5
Zaidi, S.Z.6
Delwart, E.7
-
117
-
-
84923635622
-
Specific rolling circle amplification of low-copy human polyomaviruses BKV, HPyV6, HPyV7, TSPyV, and STLPyV
-
Rockett R, Barraclough KA, Isbel NM, Dudley KJ, Nissen MD, Sloots TP, Bialasiewicz S. 2015. Specific rolling circle amplification of low-copy human polyomaviruses BKV, HPyV6, HPyV7, TSPyV, and STLPyV. J Virol Methods 215-216:17-21. http://dx.doi.org/10.1016/j .jviromet.2015.02.004
-
(2015)
J Virol Methods
, vol.215-216
, pp. 17-21
-
-
Rockett, R.1
Barraclough, K.A.2
Isbel, N.M.3
Dudley, K.J.4
Nissen, M.D.5
Sloots, T.P.6
Bialasiewicz, S.7
-
118
-
-
80052138867
-
A novel rolling circle amplification assay to detect members of the family Anelloviridae in pigs and humans
-
Macera L, Cortey M, Maggi F, Segalés J, Kekarainen T. 2011. A novel rolling circle amplification assay to detect members of the family Anelloviridae in pigs and humans. Virus Res 160:424-427. http://dx.doi .org/10.1016/j.virusres.2011.06.025
-
(2011)
Virus Res
, vol.160
, pp. 424-427
-
-
Macera, L.1
Cortey, M.2
Maggi, F.3
Segalés, J.4
Kekarainen, T.5
-
119
-
-
84924287298
-
A novel method for detection of HBVcccDNA in hepatocytes using rolling circle amplification combined with in situ PCR
-
Zhong Y, Hu S, Xu C, Zhao Y, Xu D, Zhao Y, Zhao J, Li Z, Zhang X, Zhang H, Li J. 2014. A novel method for detection of HBVcccDNA in hepatocytes using rolling circle amplification combined with in situ PCR. BMC Infect Dis 14:608. http://dx.doi.org/10.1186/s12879-014-0608-y
-
(2014)
BMC Infect Dis
, vol.14
, pp. 608
-
-
Zhong, Y.1
Hu, S.2
Xu, C.3
Zhao, Y.4
Xu, D.5
Zhao, Y.6
Zhao, J.7
Li, Z.8
Zhang, X.9
Zhang, H.10
Li, J.11
-
120
-
-
84940941884
-
MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis
-
Singhal N, Kumar M, Kanaujia PK, Virdi JS. 2015. MALDI-TOF mass spectrometry: an emerging technology for microbial identification and diagnosis. Front Microbiol 6:791. http://dx.doi.org/10.3389/fmicb .2015.00791
-
(2015)
Front Microbiol
, vol.6
, pp. 791
-
-
Singhal, N.1
Kumar, M.2
Kanaujia, P.K.3
Virdi, J.S.4
-
121
-
-
66149141008
-
Subtyping of the influenza virus by high resolution mass spectrometry
-
Schwahn AB, Wong JW, Downard KM. 2009. Subtyping of the influenza virus by high resolution mass spectrometry. Anal Chem 81: 3500-3506. http://dx.doi.org/10.1021/ac900026f
-
(2009)
Anal Chem
, vol.81
, pp. 3500-3506
-
-
Schwahn, A.B.1
Wong, J.W.2
Downard, K.M.3
-
122
-
-
84886528399
-
Proteotyping for the rapid identification of influenza virus and other biopathogens
-
Downard KM. 2013. Proteotyping for the rapid identification of influenza virus and other biopathogens. Chem Soc Rev 42:8584-8595. http://dx.doi.org/10.1039/c3cs60081e
-
(2013)
Chem Soc Rev
, vol.42
, pp. 8584-8595
-
-
Downard, K.M.1
-
123
-
-
55549137887
-
Global surveillance of emerging influenza virus genotypes by mass spectrometry
-
Sampath R, Russell KL, Massire C, Eshoo MW, Harpin V, Blyn LB, Melton R, Ivy C, Pennella T, Li F, Levene H, Hall TA, Libby B, Fan N, Walcott DJ, Ranken R, Pear M, Schink A, Gutierrez J, Drader J, Moore D, Metzgar D, Addington L, Rothman R, Gaydos CA, Yang S, St George K, Fuschino ME, Dean AB, Stallknecht DE, Goekjian G, Yingst S, Monteville M, Saad MD, Whitehouse CA, Baldwin C, Rudnick KH, Hofstadler SA, Lemon SM, Ecker DJ. 2007. Global surveillance of emerging influenza virus genotypes by mass spectrometry. PLoS One 2:e489. http://dx.doi .org/10.1371/journal.pone.0000489
-
(2007)
PLoS One
, vol.2
, pp. e489
-
-
Sampath, R.1
Russell, K.L.2
Massire, C.3
Eshoo, M.W.4
Harpin, V.5
Blyn, L.B.6
Melton, R.7
Ivy, C.8
Pennella, T.9
Li, F.10
Levene, H.11
Hall, T.A.12
Libby, B.13
Fan, N.14
Walcott, D.J.15
Ranken, R.16
Pear, M.17
Schink, A.18
Gutierrez, J.19
Drader, J.20
Moore, D.21
Metzgar, D.22
Addington, L.23
Rothman, R.24
Gaydos, C.A.25
Yang, S.26
St George, K.27
Fuschino, M.E.28
Dean, A.B.29
Stallknecht, D.E.30
Goekjian, G.31
Yingst, S.32
Monteville, M.33
Saad, M.D.34
Whitehouse, C.A.35
Baldwin, C.36
Rudnick, K.H.37
Hofstadler, S.A.38
Lemon, S.M.39
Ecker, D.J.40
more..
-
124
-
-
84864771218
-
Simultaneous detection and identification of enteric viruses by PCR-mass assay
-
Piao J, Jiang J, Xu B, Wang X, Guan Y, Wu W, Liu L, Zhang Y, Huang X, Wang P, Zhao J, Kang X, Jiang H, Cao Y, Zheng Y, Jiang Y, Li Y, Yang Y, Chen W. 2012. Simultaneous detection and identification of enteric viruses by PCR-mass assay. PLoS One 7:e42251. http://dx.doi.org /10.1371/journal.pone.0042251
-
(2012)
PLoS One
, vol.7
-
-
Piao, J.1
Jiang, J.2
Xu, B.3
Wang, X.4
Guan, Y.5
Wu, W.6
Liu, L.7
Zhang, Y.8
Huang, X.9
Wang, P.10
Zhao, J.11
Kang, X.12
Jiang, H.13
Cao, Y.14
Zheng, Y.15
Jiang, Y.16
Li, Y.17
Yang, Y.18
Chen, W.19
-
125
-
-
77954385143
-
Rapid identification of vectorborne flaviviruses by mass spectrometry
-
Grant-Klein RJ, Baldwin CD, Turell MJ, Rossi CA, Li F, Lovari R, Crowder CD, Matthews HE, Rounds MA, Eshoo MW, Blyn LB, Ecker DJ, Sampath R, Whitehouse CA. 2010. Rapid identification of vectorborne flaviviruses by mass spectrometry. Mol Cell Probes 24:219-228. http://dx.doi.org/10.1016/j.mcp.2010.04.003
-
(2010)
Mol Cell Probes
, vol.24
, pp. 219-228
-
-
Grant-Klein, R.J.1
Baldwin, C.D.2
Turell, M.J.3
Rossi, C.A.4
Li, F.5
Lovari, R.6
Crowder, C.D.7
Matthews, H.E.8
Rounds, M.A.9
Eshoo, M.W.10
Blyn, L.B.11
Ecker, D.J.12
Sampath, R.13
Whitehouse, C.A.14
-
126
-
-
84994633874
-
Detection of HPV subtypes by mass spectrometry in FFPE tissue specimens: a reliable tool for routine diagnostics
-
KriegsmannM, Wandernoth P, Lisenko K, Casadonte R, Longuespée R, Arens N, Kriegsmann J. 2017. Detection of HPV subtypes by mass spectrometry in FFPE tissue specimens: a reliable tool for routine diagnostics. J Clin Pathol 70:417-423. http://dx.doi.org/10.1136/jclinpath-2016-204017
-
(2017)
J Clin Pathol
, vol.70
, pp. 417-423
-
-
Kriegsmann, M.1
Wandernoth, P.2
Lisenko, K.3
Casadonte, R.4
Longuespée, R.5
Arens, N.6
Kriegsmann, J.7
-
127
-
-
84923268479
-
Matrixassisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry applied to virus identification
-
Calderaro A, Arcangeletti M-C, Rodighiero I, Buttrini M, Gorrini C, Motta F, Germini D, Medici M-C, Chezzi C, De Conto F. 2014. Matrixassisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry applied to virus identification. Sci Rep 4:6803. http://dx.doi .org/10.1038/srep06803
-
(2014)
Sci Rep
, vol.4
, pp. 6803
-
-
Calderaro, A.1
Arcangeletti, M.-C.2
Rodighiero, I.3
Buttrini, M.4
Gorrini, C.5
Motta, F.6
Germini, D.7
Medici, M.-C.8
Chezzi, C.9
De Conto, F.10
-
128
-
-
84994000091
-
Identification of different respiratory viruses, after a cell culture step, by matrix assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS)
-
Calderaro A, ArcangelettiMC, Rodighiero I, ButtriniM,Montecchini S, Vasile Simone R,MediciMC, Chezzi C, De Conto F. 2016. Identification of different respiratory viruses, after a cell culture step, by matrix assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF MS). Sci Rep 6:36082. http://dx.doi.org/10.1038/srep36082
-
(2016)
Sci Rep
, vol.6
, pp. 36082
-
-
Calderaro, A.1
Arcangeletti, M.C.2
Rodighiero, I.3
Buttrini, M.4
Montecchini, S.5
Vasile Simone, R.6
Medici, M.C.7
Chezzi, C.8
De Conto, F.9
-
129
-
-
84871975148
-
Application of mass spectrometry to molecular surveillance of hepatitis B and C viral infections
-
Ganova-Raeva LM, Dimitrova ZE, Campo DS, Khudyakov Y. 2012. Application of mass spectrometry to molecular surveillance of hepatitis B and C viral infections. Antivir Ther 17(7 Part B):1477-1482. http://dx.doi .org/10.3851/IMP2466
-
(2012)
Antivir Ther
, vol.17
, Issue.7
, pp. 1477-1482
-
-
Ganova-Raeva, L.M.1
Dimitrova, Z.E.2
Campo, D.S.3
Khudyakov, Y.4
-
130
-
-
84863860973
-
Sensitive and rapid detection of ganciclovir resistance by PCR based MALDI-TOF analysis
-
Zürcher S, Mooser C, Lüthi AU, Mühlemann K, Barbani MT, Mohacsi P, Garzoni C, Gorgievski-Hrisoho M, Schaller A, Flatz L. 2012. Sensitive and rapid detection of ganciclovir resistance by PCR based MALDI-TOF analysis. J Clin Virol 54:359-363. http://dx.doi.org/10.1016 /j.jcv.2012.04.019
-
(2012)
J Clin Virol
, vol.54
, pp. 359-363
-
-
Zürcher, S.1
Mooser, C.2
Lüthi, A.U.3
Mühlemann, K.4
Barbani, M.T.5
Mohacsi, P.6
Garzoni, C.7
Gorgievski-Hrisoho, M.8
Schaller, A.9
Flatz, L.10
-
131
-
-
84874617127
-
Microsphere suspension array assays for detection and differentiation of Hendra and Nipah viruses
-
Foord AJ, White JR, Colling A, Heine HG. 2013. Microsphere suspension array assays for detection and differentiation of Hendra and Nipah viruses. BioMed Res Int 2013:289295. http://dx.doi.org/10.1155 /2013/289295
-
(2013)
BioMed Res Int
, vol.2013
-
-
Foord, A.J.1
White, J.R.2
Colling, A.3
Heine, H.G.4
-
132
-
-
84975473033
-
Simultaneous detection of 13 viruses involved in meningoencephalitis using a newly developed multiplex PCR Mag-array system
-
Shi X, Wu R, Shi M, Zhou L, Wu M, Yang Y, An X, Dai W, Tian L, Zhang C, Ma X, Zhao G. 2016. Simultaneous detection of 13 viruses involved in meningoencephalitis using a newly developed multiplex PCR Mag-array system. Int J Infect Dis 49:80-86. http://dx.doi.org/10.1016/j .ijid.2016.05.023
-
(2016)
Int J Infect Dis
, vol.49
, pp. 80-86
-
-
Shi, X.1
Wu, R.2
Shi, M.3
Zhou, L.4
Wu, M.5
Yang, Y.6
An, X.7
Dai, W.8
Tian, L.9
Zhang, C.10
Ma, X.11
Zhao, G.12
-
133
-
-
85006877788
-
Simultaneous detection of multiple viruses based on chemiluminescence and magnetic separation
-
Ali Z, Wang J, Tang Y, Liu B, He N, Li Z. 2016. Simultaneous detection of multiple viruses based on chemiluminescence and magnetic separation. Biomater Sci 5:57-66. http://dx.doi.org/10.1039/C6BM00527F
-
(2016)
Biomater Sci
, vol.5
, pp. 57-66
-
-
Ali, Z.1
Wang, J.2
Tang, Y.3
Liu, B.4
He, N.5
Li, Z.6
-
134
-
-
85006992340
-
Rapid visual screening and programmable subtype classification of Ebola virus biomarkers
-
Balcioglu M, Rana M, Hizir MS, Robertson NM, Haque K, Yigit MV. 2017. Rapid visual screening and programmable subtype classification of Ebola virus biomarkers. Adv Healthc Mater 6:1600739
-
(2017)
Adv Healthc Mater
, vol.6
-
-
Balcioglu, M.1
Rana, M.2
Hizir, M.S.3
Robertson, N.M.4
Haque, K.5
Yigit, M.V.6
-
135
-
-
7444246060
-
Triggered amplification by hybridization chain reaction
-
Dirks RM, Pierce NA. 2004. Triggered amplification by hybridization chain reaction. Proc Natl Acad Sci U S A 101:15275-15278. http:// dx.doi.org/10.1073/pnas.0407024101
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 15275-15278
-
-
Dirks, R.M.1
Pierce, N.A.2
-
136
-
-
84922481959
-
Comparison of ultradeep versus Sanger sequencing detection of minority mutations on the HIV-1 drug resistance interpretations after virological failure
-
Mohamed S, Penaranda G, Gonzalez D, Camus C, Khiri H, Boulmé R, Sayada C, Philibert P, Olive D, Halfon P. 2014. Comparison of ultradeep versus Sanger sequencing detection of minority mutations on the HIV-1 drug resistance interpretations after virological failure. AIDS 28: 1315-1324. http://dx.doi.org/10.1097/QAD.0000000000000267
-
(2014)
AIDS
, vol.28
, pp. 1315-1324
-
-
Mohamed, S.1
Penaranda, G.2
Gonzalez, D.3
Camus, C.4
Khiri, H.5
Boulmé, R.6
Sayada, C.7
Philibert, P.8
Olive, D.9
Halfon, P.10
-
137
-
-
82255181690
-
Applications of next-generation sequencing technologies to diagnostic virology
-
Barzon L, Lavezzo E,Militello V, Toppo S, Palù G. 2011. Applications of next-generation sequencing technologies to diagnostic virology. Int J Mol Sci 12:7861-7884. http://dx.doi.org/10.3390/ijms12117861
-
(2011)
Int J Mol Sci
, vol.12
, pp. 7861-7884
-
-
Barzon, L.1
Lavezzo, E.2
Militello, V.3
Toppo, S.4
Palù, G.5
-
138
-
-
81755185962
-
Ultra-deep sequencing for the analysis of viral populations
-
Beerenwinkel N, Zagordi O. 2011. Ultra-deep sequencing for the analysis of viral populations. Curr Opin Virol 1:413-418. http://dx.doi .org/10.1016/j.coviro.2011.07.008
-
(2011)
Curr Opin Virol
, vol.1
, pp. 413-418
-
-
Beerenwinkel, N.1
Zagordi, O.2
-
139
-
-
84863586118
-
Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen
-
Fisher R, van Zyl GU, Travers SAA, Kosakovsky Pond SL, Engelbrech S, Murrell B, Scheffler K, Smith D. 2012. Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen. J Virol 86:6231-6237. http://dx.doi.org/10.1128/JVI.06541-11
-
(2012)
J Virol
, vol.86
, pp. 6231-6237
-
-
Fisher, R.1
van Zyl, G.U.2
Travers, S.A.A.3
Kosakovsky Pond, S.L.4
Engelbrech, S.5
Murrell, B.6
Scheffler, K.7
Smith, D.8
-
140
-
-
84896944940
-
Sensitive deep-sequencing-basedHIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism
-
Gibson RM,Meyer AM,Winner D, Archer J, Feyertag F, Ruiz-Mateos E, Leal M, Robertson DL, Schmotzer CL, Quiñones-Mateu ME. 2014. Sensitive deep-sequencing-basedHIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism. Antimicrob Agents Chemother 58:2167-2185. http://dx.doi.org/10.1128/AAC.02710-13
-
(2014)
Antimicrob Agents Chemother
, vol.58
, pp. 2167-2185
-
-
Gibson, R.M.1
Meyer, A.M.2
Winner, D.3
Archer, J.4
Feyertag, F.5
Ruiz-Mateos, E.6
Leal, M.7
Robertson, D.L.8
Schmotzer, C.L.9
Quiñones-Mateu, M.E.10
-
141
-
-
84934909975
-
HIV-1 genotypic drug resistance testing: digging deep, reaching wide?
-
Van Laethem K, Theys K, Vandamme AM. 2015. HIV-1 genotypic drug resistance testing: digging deep, reaching wide? Curr Opin Virol 14:16-23. http://dx.doi.org/10.1016/j.coviro.2015.06.001
-
(2015)
Curr Opin Virol
, vol.14
, pp. 16-23
-
-
Van Laethem, K.1
Theys, K.2
Vandamme, A.M.3
-
142
-
-
77956667520
-
Covering all bases in HIV research: unveiling a hidden world of viral evolution
-
Vrancken B, Lequime S, Theys K, Lemey P. 2010. Covering all bases in HIV research: unveiling a hidden world of viral evolution. AIDS Rev 12:89-102
-
(2010)
AIDS Rev
, vol.12
, pp. 89-102
-
-
Vrancken, B.1
Lequime, S.2
Theys, K.3
Lemey, P.4
-
143
-
-
66249094578
-
Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo
-
Tsibris AMN, Korber B, Arnaout R, Russ C, Lo CC, Leitner T, Gaschen B, Theiler J, Paredes R, Su Z, Hughes MD, Gulick RM, Greaves W, Coakley E, Flexner C, Nusbaum C, Kuritzkes DR. 2009. Quantitative deep sequencing reveals dynamic HIV-1 escape and large population shifts during CCR5 antagonist therapy in vivo. PLoS One 4:e5683. http://dx .doi.org/10.1371/journal.pone.0005683
-
(2009)
PLoS One
, vol.4
-
-
Tsibris, A.M.N.1
Korber, B.2
Arnaout, R.3
Russ, C.4
Lo, C.C.5
Leitner, T.6
Gaschen, B.7
Theiler, J.8
Paredes, R.9
Su, Z.10
Hughes, M.D.11
Gulick, R.M.12
Greaves, W.13
Coakley, E.14
Flexner, C.15
Nusbaum, C.16
Kuritzkes, D.R.17
-
144
-
-
34547643929
-
Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance
-
Wang C, Mitsuya Y, Gharizadeh B, Ronaghi M, Shafer RW. 2007. Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res 17:1195-1201. http:// dx.doi.org/10.1101/gr.6468307
-
(2007)
Genome Res
, vol.17
, pp. 1195-1201
-
-
Wang, C.1
Mitsuya, Y.2
Gharizadeh, B.3
Ronaghi, M.4
Shafer, R.W.5
-
145
-
-
78649469126
-
Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism
-
Dybowski JN, Heider D, Hoffmann D. 2010. Structure of HIV-1 quasi-species as early indicator for switches of co-receptor tropism. AIDS Res Ther 7:41. http://dx.doi.org/10.1186/1742-6405-7-41
-
(2010)
AIDS Res Ther
, vol.7
, pp. 41
-
-
Dybowski, J.N.1
Heider, D.2
Hoffmann, D.3
-
146
-
-
0030138199
-
Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development
-
Bachem CWB, van der Hoeven RS, de Bruijn SM, Vreugdenhil D, Zabeau M, Visser RGF, van der Hoeven RS, de Bruijn SM, Vreugdenhil D, Zabeau M, Visser RGF. 1996. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. Plant J 9:745-753. http://dx.doi.org/10.1046/j.1365-313X.1996.9050745.x
-
(1996)
Plant J
, vol.9
, pp. 745-753
-
-
Bachem, C.W.B.1
van der Hoeven, R.S.2
de Bruijn, S.M.3
Vreugdenhil, D.4
Zabeau, M.5
Visser, R.G.F.6
van der Hoeven, R.S.7
de Bruijn, S.M.8
Vreugdenhil, D.9
Zabeau, M.10
Visser, R.G.F.11
-
147
-
-
0033063294
-
Genetic polymorphism near HIV-1 reverse transcriptase resistance-associated codons is a major obstacle for the line probe assay as an alternative method to sequence analysis
-
Koch N, Yahi N, Colson P, Fantini J, Tamalet C. 1999. Genetic polymorphism near HIV-1 reverse transcriptase resistance-associated codons is a major obstacle for the line probe assay as an alternative method to sequence analysis. J Virol Methods 80:25-31. http://dx.doi.org /10.1016/S0166-0934(99)00030-0
-
(1999)
J Virol Methods
, vol.80
, pp. 25-31
-
-
Koch, N.1
Yahi, N.2
Colson, P.3
Fantini, J.4
Tamalet, C.5
-
148
-
-
2142819962
-
Retrospective analysis of antiretroviral HIV treatment success based on medical history or guided by the reverse hybridisation LiPA HIV genotyping system
-
Alvarez M, García F, Martínez NM, Hernández Quero J, Louwagie J, De Brauwer A, Maroto MC. 2004. Retrospective analysis of antiretroviral HIV treatment success based on medical history or guided by the reverse hybridisation LiPA HIV genotyping system. J Med Virol 73:151-157 http://dx.doi.org/10.1002/jmv.20069
-
(2004)
J Med Virol
, vol.73
, pp. 151-157
-
-
Alvarez, M.1
García, F.2
Martínez, N.M.3
Hernández Quero, J.4
Louwagie, J.5
De Brauwer, A.6
Maroto, M.C.7
-
149
-
-
84884530531
-
Next-generation sequencing technologies in diagnostic virology
-
Barzon L, Lavezzo E, Costanzi G, Franchin E, Toppo S, Palù G. 2013 Next-generation sequencing technologies in diagnostic virology. J Clin Virol 58:346-350. http://dx.doi.org/10.1016/j.jcv.2013.03.003
-
(2013)
J Clin Virol
, vol.58
, pp. 346-350
-
-
Barzon, L.1
Lavezzo, E.2
Costanzi, G.3
Franchin, E.4
Toppo, S.5
Palù, G.6
-
150
-
-
84894259565
-
Low-frequency nevirapine (NVP)-resistant HIV-1 variants are not associated with failure of antiretroviral therapy in women without prior exposure to single-dose NVP
-
Boltz VF, Bao Y, Lockman S, Halvas EK, Kearney MF, McIntyre JA, Schooley RT, Hughes MD, Coffin JM, Mellors JW, Zwickl B, Mutuluuza CK, Kaseba C, Maponga CC, Watts H, Kuritzkes D, Campbell TB, Kidd-Freeman L, Carten M, Hitti J, Marovich M, Mugyenyi PN, Rwambuya S, Sanne IM, Putnam B, Marcus C, Wester C, DiFrancesco R, Halvas E, Beddison A, Lehrman S, Aweeka F, Dong B, Ziba PN, Saag MS, Holmes WC, Hammer SM, OCTANE/A5208 Team. 2014. Low-frequency nevirapine (NVP)-resistant HIV-1 variants are not associated with failure of antiretroviral therapy in women without prior exposure to single-dose NVP. J Infect Dis 209:703-710. http://dx.doi.org/10.1093/infdis/jit635
-
(2014)
J Infect Dis
, vol.209
, pp. 703-710
-
-
Boltz, V.F.1
Bao, Y.2
Lockman, S.3
Halvas, E.K.4
Kearney, M.F.5
McIntyre, J.A.6
Schooley, R.T.7
Hughes, M.D.8
Coffin, J.M.9
Mellors, J.W.10
Zwickl, B.11
Mutuluuza, C.K.12
Kaseba, C.13
Maponga, C.C.14
Watts, H.15
Kuritzkes, D.16
Campbell, T.B.17
Kidd-Freeman, L.18
Carten, M.19
Hitti, J.20
Marovich, M.21
Mugyenyi, P.N.22
Rwambuya, S.23
Sanne, I.M.24
Putnam, B.25
Marcus, C.26
Wester, C.27
DiFrancesco, R.28
Halvas, E.29
Beddison, A.30
Lehrman, S.31
Aweeka, F.32
Dong, B.33
Ziba, P.N.34
Saag, M.S.35
Holmes, W.C.36
Hammer, S.M.37
more..
-
151
-
-
84879794051
-
Frequency and implications of HIV superinfection
-
Redd AD, Quinn TC, Tobian AAR. 2013. Frequency and implications of HIV superinfection. Lancet Infect Dis 13:622-628. http://dx .doi.org/10.1016/S1473-3099(13)70066-5
-
(2013)
Lancet Infect Dis
, vol.13
, pp. 622-628
-
-
Redd, A.D.1
Quinn, T.C.2
Tobian, A.A.R.3
-
152
-
-
84866869125
-
Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 "deep" sequencing
-
Lee GQ, Swenson LC, Poon AFY, Martin JN, Hatano H, Deeks SG, Harrigan PR. 2012. Prolonged and substantial discordance in prevalence of raltegravir-resistant HIV-1 in plasma versus PBMC samples revealed by 454 "deep" sequencing. PLoS One 7:e46181. http://dx.doi.org/10.1371 /journal.pone.0046181
-
(2012)
PLoS One
, vol.7
-
-
Lee, G.Q.1
Swenson, L.C.2
Poon, A.F.Y.3
Martin, J.N.4
Hatano, H.5
Deeks, S.G.6
Harrigan, P.R.7
-
153
-
-
65649130002
-
Ultra-deep pyrosequencing of hepatitis B virus quasispecies from nucleoside and nucleotide reverse-transcriptase inhibitor (NRTI)-treated patients and NRTI-naive patients
-
Margeridon-Thermet S, Shulman NS, Ahmed A, Shahriar R, Liu T, Wang C, Holmes SP, Babrzadeh F, Gharizadeh B, Hanczaruk B, Simen BB, Egholm M, Shafer RW. 2009. Ultra-deep pyrosequencing of hepatitis B virus quasispecies from nucleoside and nucleotide reverse-transcriptase inhibitor (NRTI)-treated patients and NRTI-naive patients. J Infect Dis 199:1275-1285. http://dx.doi.org/10.1086/597808
-
(2009)
J Infect Dis
, vol.199
, pp. 1275-1285
-
-
Margeridon-Thermet, S.1
Shulman, N.S.2
Ahmed, A.3
Shahriar, R.4
Liu, T.5
Wang, C.6
Holmes, S.P.7
Babrzadeh, F.8
Gharizadeh, B.9
Hanczaruk, B.10
Simen, B.B.11
Egholm, M.12
Shafer, R.W.13
-
154
-
-
77952709675
-
Hepatitis C virus transmission bottlenecks analyzed by deep sequencing
-
Wang GP, Sherrill-Mix SA, Chang K-M, Quince C, Bushman FD. 2010 Hepatitis C virus transmission bottlenecks analyzed by deep sequencing. J Virol 84:6218-6228. http://dx.doi.org/10.1128/JVI.02271-09
-
(2010)
J Virol
, vol.84
, pp. 6218-6228
-
-
Wang, G.P.1
Sherrill-Mix, S.A.2
Chang, K.-M.3
Quince, C.4
Bushman, F.D.5
-
155
-
-
84962094612
-
Genetic drift during systemic arbovirus infection of mosquito vectors leads to decreased relative fitness during host switching
-
Grubaugh ND, Weger-Lucarelli J, Murrieta RA, Fauver JR, Garcia-Luna SM, Prasad AN, Black WC, IV, Ebel GD. 2016. Genetic drift during systemic arbovirus infection of mosquito vectors leads to decreased relative fitness during host switching. Cell Host Microbe 19:481-492. http:// dx.doi.org/10.1016/j.chom.2016.03.002
-
(2016)
Cell Host Microbe
, vol.19
, pp. 481-492
-
-
Grubaugh, N.D.1
Weger-Lucarelli, J.2
Murrieta, R.A.3
Fauver, J.R.4
Garcia-Luna, S.M.5
Prasad, A.N.6
Black, W.C.7
Ebel, G.D.8
-
156
-
-
84975875680
-
Genetic drift, purifying selection and vector genotype shape dengue virus intra-host genetic diversity in mosquitoes
-
Lequime S, Fontaine A, Ar Gouilh M, Moltini-Conclois I, Lambrechts L. 2016. Genetic drift, purifying selection and vector genotype shape dengue virus intra-host genetic diversity in mosquitoes. PLoS Genet 12: e1006111. http://dx.doi.org/10.1371/journal.pgen.1006111
-
(2016)
PLoS Genet
, vol.12
-
-
Lequime, S.1
Fontaine, A.2
Ar Gouilh, M.3
Moltini-Conclois, I.4
Lambrechts, L.5
-
157
-
-
84865073496
-
Genome-wide patterns of intrahuman dengue virus diversity reveal associations with viral phylogenetic clade and interhost diversity
-
Parameswaran P, Charlebois P, Tellez Y, Nunez A, Ryan EM, Malboeuf CM, Levin JZ, Lennon NJ, Balmaseda A, Harris E, Henn MR. 2012 Genome-wide patterns of intrahuman dengue virus diversity reveal associations with viral phylogenetic clade and interhost diversity. J Virol 86:8546-8558. http://dx.doi.org/10.1128/JVI.00736-12
-
(2012)
J Virol
, vol.86
, pp. 8546-8558
-
-
Parameswaran, P.1
Charlebois, P.2
Tellez, Y.3
Nunez, A.4
Ryan, E.M.5
Malboeuf, C.M.6
Levin, J.Z.7
Lennon, N.J.8
Balmaseda, A.9
Harris, E.10
Henn, M.R.11
-
158
-
-
84989247273
-
Evolutionary dynamics of dengue virus populations within the mosquito vector
-
Lambrechts L, Lequime S. 2016. Evolutionary dynamics of dengue virus populations within the mosquito vector. Curr Opin Virol 21:47-53. http://dx.doi.org/10.1016/j.coviro.2016.07.013
-
(2016)
Curr Opin Virol
, vol.21
, pp. 47-53
-
-
Lambrechts, L.1
Lequime, S.2
-
159
-
-
84888581141
-
Non-coding RNAs in hepatitis C-induced hepatocellular carcinoma: dysregulation and implications for early detection, diagnosis and therapy
-
Hou W, Bonkovsky HL. 2013. Non-coding RNAs in hepatitis C-induced hepatocellular carcinoma: dysregulation and implications for early detection, diagnosis and therapy. World J Gastroenterol 19:7836-7845 http://dx.doi.org/10.3748/wjg.v19.i44.7836
-
(2013)
World J Gastroenterol
, vol.19
, pp. 7836-7845
-
-
Hou, W.1
Bonkovsky, H.L.2
-
160
-
-
84991204660
-
Development and validation of a templateindependent next-generation sequencing assay for detecting low-level resistance-associated variants of hepatitis C virus
-
Wei B, Kang J, Kibukawa M, Chen L, Qiu P, Lahser F, Marton M, Levitan D. 2016. Development and validation of a templateindependent next-generation sequencing assay for detecting low-level resistance-associated variants of hepatitis C virus. J Mol Diagn 18:643-656 http://dx.doi.org/10.1016/j.jmoldx.2016.04.001
-
(2016)
J Mol Diagn
, vol.18
, pp. 643-656
-
-
Wei, B.1
Kang, J.2
Kibukawa, M.3
Chen, L.4
Qiu, P.5
Lahser, F.6
Marton, M.7
Levitan, D.8
-
161
-
-
84937511221
-
Origins and evolution of viruses of eukaryotes: the ultimate modularity
-
Koonin EV, Dolja VV, Krupovic M. 2015. Origins and evolution of viruses of eukaryotes: the ultimate modularity. Virology 479-480:2-25. http://dx.doi.org/10.1016/j.virol.2015.02.039
-
(2015)
Virology
, vol.479-480
, pp. 2-25
-
-
Koonin, E.V.1
Dolja, V.V.2
Krupovic, M.3
-
162
-
-
79958069377
-
Extensive genome-wide variability of human cytomegalovirus in congenitally infected infants
-
Renzette N, Bhattacharjee B, Jensen JD, Gibson L, Kowalik TF. 2011 Extensive genome-wide variability of human cytomegalovirus in congenitally infected infants. PLoS Pathog 7:e1001344. http://dx.doi.org /10.1371/journal.ppat.1001344
-
(2011)
PLoS Pathog
, vol.7
-
-
Renzette, N.1
Bhattacharjee, B.2
Jensen, J.D.3
Gibson, L.4
Kowalik, T.F.5
-
163
-
-
84859867365
-
Analysis and clinical correlation of genetic variation in cytomegalovirus
-
Lisboa LF, Tong Y, Kumar D, Pang XL, Asberg A, Hartmann A, Rollag H, Jardine AG, Pescovitz MD, Humar A. 2012. Analysis and clinical correlation of genetic variation in cytomegalovirus. Transpl Infect Dis 14:132-140. http://dx.doi.org/10.1111/j.1399-3062.2011 .00685.x
-
(2012)
Transpl Infect Dis
, vol.14
, pp. 132-140
-
-
Lisboa, L.F.1
Tong, Y.2
Kumar, D.3
Pang, X.L.4
Asberg, A.5
Hartmann, A.6
Rollag, H.7
Jardine, A.G.8
Pescovitz, M.D.9
Humar, A.10
-
164
-
-
84949468738
-
Analysis of human cytomegalovirus strain populations in urine samples of newborns by ultra deep sequencing
-
Görzer I, Trajanoski S, Popow-Kraupp T, Puchhammer-Stöckl E. 2015 Analysis of human cytomegalovirus strain populations in urine samples of newborns by ultra deep sequencing. J Clin Virol 73:101-104. http://dx.doi.org/10.1016/j.jcv.2015.11.003
-
(2015)
J Clin Virol
, vol.73
, pp. 101-104
-
-
Görzer, I.1
Trajanoski, S.2
Popow-Kraupp, T.3
Puchhammer-Stöckl, E.4
-
165
-
-
2942567871
-
Classification of papillomaviruses
-
de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H. 2004 Classification of papillomaviruses. Virology 324:17-27. http://dx .doi.org/10.1016/j.virol.2004.03.033
-
(2004)
Virology
, vol.324
, pp. 17-27
-
-
de Villiers, E.M.1
Fauquet, C.2
Broker, T.R.3
Bernard, H.U.4
zur Hausen, H.5
-
166
-
-
84904803586
-
Deep sequencing extends the diversity of human papillomaviruses in human skin
-
Bzhalava D, Mühr LSA, Lagheden C, Ekström J, Forslund O, Dillner J, Hultin E. 2014. Deep sequencing extends the diversity of human papillomaviruses in human skin. Sci Rep 4:5807. http://dx.doi.org/10 .1038/srep05807
-
(2014)
Sci Rep
, vol.4
, pp. 5807
-
-
Bzhalava, D.1
Mühr, L.S.A.2
Lagheden, C.3
Ekström, J.4
Forslund, O.5
Dillner, J.6
Hultin, E.7
-
167
-
-
84884355784
-
Human papillomavirus genome variants
-
Burk RD, Harari A, Chen Z. 2013. Human papillomavirus genome variants. Virology 445:232-243. http://dx.doi.org/10.1016/j.virol.2013 .07.018
-
(2013)
Virology
, vol.445
, pp. 232-243
-
-
Burk, R.D.1
Harari, A.2
Chen, Z.3
-
168
-
-
84908567001
-
HPV DNA, E6/E7 mRNA, and p16INK4a detection in head and neck cancers: a systematic review and meta-analysis
-
Ndiaye C, Mena M, Alemany L, Arbyn M, Castellsagué X, Laporte L, Bosch FX, de Sanjosé S, Trottier H. 2014. HPV DNA, E6/E7 mRNA, and p16INK4a detection in head and neck cancers: a systematic review and meta-analysis. Lancet Oncol 15:1319-1331. http://dx.doi.org/10 .1016/S1470-2045(14)70471-1
-
(2014)
Lancet Oncol
, vol.15
, pp. 1319-1331
-
-
Ndiaye, C.1
Mena, M.2
Alemany, L.3
Arbyn, M.4
Castellsagué, X.5
Laporte, L.6
Bosch, F.X.7
de Sanjosé, S.8
Trottier, H.9
-
169
-
-
69249214151
-
Mixed infection and the genesis of influenza virus diversity
-
Ghedin E, Fitch A, Boyne A, Griesemer S, DePasse J, Bera J, Zhang X, Halpin RA, Smit M, Jennings L, St George K, Holmes EC, Spiro DJ. 2009 Mixed infection and the genesis of influenza virus diversity. J Virol 83:8832-8841. http://dx.doi.org/10.1128/JVI.00773-09
-
(2009)
J Virol
, vol.83
, pp. 8832-8841
-
-
Ghedin, E.1
Fitch, A.2
Boyne, A.3
Griesemer, S.4
DePasse, J.5
Bera, J.6
Zhang, X.7
Halpin, R.A.8
Smit, M.9
Jennings, L.10
St George, K.11
Holmes, E.C.12
Spiro, D.J.13
-
170
-
-
79953279914
-
Influenza genome diversity and evolution
-
Tsai KN, Chen GW. 2011. Influenza genome diversity and evolution. Microbes Infect 13:479-488. http://dx.doi.org/10.1016/j.micinf.2011.01.013
-
(2011)
Microbes Infect
, vol.13
, pp. 479-488
-
-
Tsai, K.N.1
Chen, G.W.2
-
171
-
-
84886397294
-
Changes in the hemagglutinin of H5N1 viruses during human infection-influence on receptor binding
-
Crusat M, Liu J, Palma AS, Childs RA, Liu Y, Wharton SA, Lin YP, Coombs PJ, Martin SR, Matrosovich M, Chen Z, Stevens DJ, Hien VM, Thanh TT, Nhu NT, Nguyet LA, Ha Q, van Doorn HR, Hien TT, Conradt HS, Kiso M, Gamblin SJ, Chai W, Skehel JJ, Hay AJ, Farrar J, de Jong MD, Feizi T. 2013. Changes in the hemagglutinin of H5N1 viruses during human infection-influence on receptor binding. Virology 447:326-337 http://dx.doi.org/10.1016/j.virol.2013.08.010
-
(2013)
Virology
, vol.447
, pp. 326-337
-
-
Crusat, M.1
Liu, J.2
Palma, A.S.3
Childs, R.A.4
Liu, Y.5
Wharton, S.A.6
Lin, Y.P.7
Coombs, P.J.8
Martin, S.R.9
Matrosovich, M.10
Chen, Z.11
Stevens, D.J.12
Hien, V.M.13
Thanh, T.T.14
Nhu, N.T.15
Nguyet, L.A.16
Ha, Q.17
van Doorn, H.R.18
Hien, T.T.19
Conradt, H.S.20
Kiso, M.21
Gamblin, S.J.22
Chai, W.23
Skehel, J.J.24
Hay, A.J.25
Farrar, J.26
de Jong, M.D.27
Feizi, T.28
more..
-
172
-
-
56249129298
-
Detection of human virulence signatures in H5N1
-
Waybright N, Petrangelo E, Lowary P, Bogan J, Mulholland N. 2008 Detection of human virulence signatures in H5N1. J Virol Methods 154:200-205. http://dx.doi.org/10.1016/j.jviromet.2008.09.013
-
(2008)
J Virol Methods
, vol.154
, pp. 200-205
-
-
Waybright, N.1
Petrangelo, E.2
Lowary, P.3
Bogan, J.4
Mulholland, N.5
-
173
-
-
80051858702
-
Rapid detection and subtyping of human influenza A viruses and reassortants by pyrosequencing
-
Deng YM, Caldwell N, Barr IG. 2011. Rapid detection and subtyping of human influenza A viruses and reassortants by pyrosequencing. PLoS One 6:e23400. http://dx.doi.org/10.1371/journal.pone.0023400
-
(2011)
PLoS One
, vol.6
-
-
Deng, Y.M.1
Caldwell, N.2
Barr, I.G.3
-
174
-
-
84894575872
-
Influenza H7N9 and H9N2 viruses: coexistence in poultry linked to human H7N9 infection and genome characteristics
-
Yu X, Jin T, Cui Y, Pu X, Li J, Xu J, Liu G, Jia H, Liu D, Song S, Yu Y, Xie L, Huang R, Ding H, Kou Y, Zhou Y, Wang Y, Xu X, Yin Y, Wang J, Guo C, Yang X, Hu L,Wu X,Wang H, Liu J, ZhaoG, Zhou J, Pan J, Gao GF, Yang R,Wang J. 2014. Influenza H7N9 and H9N2 viruses: coexistence in poultry linked to human H7N9 infection and genome characteristics. J Virol 88:3423-3431. http://dx.doi.org/10.1128/JVI.02059-13
-
(2014)
J Virol
, vol.88
, pp. 3423-3431
-
-
Yu, X.1
Jin, T.2
Cui, Y.3
Pu, X.4
Li, J.5
Xu, J.6
Liu, G.7
Jia, H.8
Liu, D.9
Song, S.10
Yu, Y.11
Xie, L.12
Huang, R.13
Ding, H.14
Kou, Y.15
Zhou, Y.16
Wang, Y.17
Xu, X.18
Yin, Y.19
Wang, J.20
Guo, C.21
Yang, X.22
Hu, L.23
Wu, X.24
Wang, H.25
Liu, J.26
Zhao, G.27
Zhou, J.28
Pan, J.29
Gao, G.F.30
Yang, R.31
Wang, J.32
more..
-
175
-
-
84867692130
-
Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission
-
Ghedin E, Holmes EC, DePasse JV, Pinilla LT, Fitch A, Hamelin ME, Papenburg J, Boivin G. 2012. Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission. J Infect Dis 206:1504-1511. http://dx.doi.org/10.1093 /infdis/jis571
-
(2012)
J Infect Dis
, vol.206
, pp. 1504-1511
-
-
Ghedin, E.1
Holmes, E.C.2
DePasse, J.V.3
Pinilla, L.T.4
Fitch, A.5
Hamelin, M.E.6
Papenburg, J.7
Boivin, G.8
-
176
-
-
67649538978
-
Origins and evolutionary genomics of the 2009 swineorigin H1N1 influenza A epidemic
-
Smith GJD, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JSM, Guan Y, Rambaut A. 2009. Origins and evolutionary genomics of the 2009 swineorigin H1N1 influenza A epidemic. Nature 459:1122-1125. http://dx.doi .org/10.1038/nature08182
-
(2009)
Nature
, vol.459
, pp. 1122-1125
-
-
Smith, G.J.D.1
Vijaykrishna, D.2
Bahl, J.3
Lycett, S.J.4
Worobey, M.5
Pybus, O.G.6
Ma, S.K.7
Cheung, C.L.8
Raghwani, J.9
Bhatt, S.10
Peiris, J.S.M.11
Guan, Y.12
Rambaut, A.13
-
177
-
-
84977958758
-
Bayesian inference reveals host-specific contributions to the epidemic expansion of influenza A H5N1
-
Trovão NS, Suchard MA, Baele G, Gilbert M, Lemey P. 2015. Bayesian inference reveals host-specific contributions to the epidemic expansion of influenza A H5N1. Mol Biol Evol 32:3264-3275
-
(2015)
Mol Biol Evol
, vol.32
, pp. 3264-3275
-
-
Trovão, N.S.1
Suchard, M.A.2
Baele, G.3
Gilbert, M.4
Lemey, P.5
-
178
-
-
78650545749
-
Massively parallel sequencing for monitoring genetic consistency and quality control of live viral vaccines
-
Neverov A, Chumakov K. 2010. Massively parallel sequencing for monitoring genetic consistency and quality control of live viral vaccines. Proc Natl Acad Sci U S A 107:20063-20068. http://dx.doi.org/10.1073 /pnas.1012537107
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 20063-20068
-
-
Neverov, A.1
Chumakov, K.2
-
179
-
-
77952692589
-
Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus
-
Victoria JG, Wang C, Jones MS, Jaing C, McLoughlin K, Gardner S, Delwart EL. 2010. Viral nucleic acids in live-attenuated vaccines: detection of minority variants and an adventitious virus. J Virol 84:6033-6040. http://dx.doi.org/10.1128/JVI.02690-09
-
(2010)
J Virol
, vol.84
, pp. 6033-6040
-
-
Victoria, J.G.1
Wang, C.2
Jones, M.S.3
Jaing, C.4
McLoughlin, K.5
Gardner, S.6
Delwart, E.L.7
-
180
-
-
84884301690
-
The genomics of emerging pathogens
-
Firth C, Lipkin WI. 2013. The genomics of emerging pathogens. Annu Rev Genomics Hum Genet 14:281-300. http://dx.doi.org/10.1146 /annurev-genom-091212-153446
-
(2013)
Annu Rev Genomics Hum Genet
, vol.14
, pp. 281-300
-
-
Firth, C.1
Lipkin, W.I.2
-
181
-
-
77957985271
-
Microbe hunting
-
Lipkin WI. 2010. Microbe hunting. Microbiol Mol Biol Rev 74:363-377 http://dx.doi.org/10.1128/MMBR.00007-10
-
(2010)
Microbiol Mol Biol Rev
, vol.74
, pp. 363-377
-
-
Lipkin, W.I.1
-
182
-
-
84882860961
-
Viral pathogen discovery
-
Chiu CY. 2013. Viral pathogen discovery. Curr Opin Microbiol 16:468-478. http://dx.doi.org/10.1016/j.mib.2013.05.001
-
(2013)
Curr Opin Microbiol
, vol.16
, pp. 468-478
-
-
Chiu, C.Y.1
|