메뉴 건너뛰기




Volumn 18, Issue 1, 2018, Pages

Assessing the performance of a Loop Mediated Isothermal Amplification (LAMP) assay for the detection and subtyping of high-risk suptypes of Human Papilloma Virus (HPV) for Oropharyngeal Squamous Cell Carcinoma (OPSCC) without DNA purification

Author keywords

HPV; LAMP; Loop mediated isothermal amplification; OPSCC; Oropharynx

Indexed keywords

ARTICLE; CARCINOGENESIS; CONTROLLED STUDY; DILUTION; GENE DOSAGE; HUMAN; HUMAN CELL; HUMAN PAPILLOMAVIRUS TYPE 16; HUMAN PAPILLOMAVIRUS TYPE 18; HUMAN PAPILLOMAVIRUS TYPE 31; HUMAN PAPILLOMAVIRUS TYPE 35; HUMAN TISSUE; IMMUNOHISTOCHEMISTRY; LIMIT OF DETECTION; LIMIT OF QUANTITATION; LOOP MEDIATED ISOTHERMAL AMPLIFICATION; NONHUMAN; OROPHARYNX SQUAMOUS CELL CARCINOMA; POLYMERASE CHAIN REACTION; RELIABILITY; TUMOR SUPPRESSOR GENE; VIRUS DETECTION; WART VIRUS; HEAD AND NECK TUMOR; NUCLEIC ACID AMPLIFICATION; OROPHARYNX TUMOR; PAPILLOMAVIRIDAE; PAPILLOMAVIRUS INFECTION; PROCEDURES; SQUAMOUS CELL CARCINOMA; VIROLOGY;

EID: 85041846762     PISSN: None     EISSN: 14712407     Source Type: Journal    
DOI: 10.1186/s12885-018-4087-1     Document Type: Article
Times cited : (23)

References (43)
  • 1
    • 39149104081 scopus 로고    scopus 로고
    • Incidence trends for human papillomavirus-related and -unrelated oral squamous cell carcinomas in the United States
    • Chaturvedi AK, Engels EA, Anderson WF, Gillison ML. Incidence trends for human papillomavirus-related and -unrelated oral squamous cell carcinomas in the United States. J Clin Oncol. 2008;26(4):612-9.
    • (2008) J Clin Oncol , vol.26 , Issue.4 , pp. 612-619
    • Chaturvedi, A.K.1    Engels, E.A.2    Anderson, W.F.3    Gillison, M.L.4
  • 4
    • 84888305913 scopus 로고    scopus 로고
    • Human papilloma virus positive oropharyngeal squamous cell carcinoma: a growing epidemic
    • Panwar A, Batra R, Lydiatt WM, Ganti AK. Human papilloma virus positive oropharyngeal squamous cell carcinoma: a growing epidemic. Cancer Treat Rev. 2013;40(2):215-9.
    • (2013) Cancer Treat Rev , vol.40 , Issue.2 , pp. 215-219
    • Panwar, A.1    Batra, R.2    Lydiatt, W.M.3    Ganti, A.K.4
  • 7
    • 39649109915 scopus 로고    scopus 로고
    • Improved survival of patients with human papillomavirus-positive head and neck squamous cell carcinoma in a prospective clinical trial
    • Fakhry C, Westra WH, Li S, Cmelak A, Ridge JA, Pinto H, Forastiere A, Gillison ML. Improved survival of patients with human papillomavirus-positive head and neck squamous cell carcinoma in a prospective clinical trial. J Natl Cancer Inst. 2008;100(4):261-9.
    • (2008) J Natl Cancer Inst , vol.100 , Issue.4 , pp. 261-269
    • Fakhry, C.1    Westra, W.H.2    Li, S.3    Cmelak, A.4    Ridge, J.A.5    Pinto, H.6    Forastiere, A.7    Gillison, M.L.8
  • 9
    • 79955514313 scopus 로고    scopus 로고
    • Survival and human papillomavirus in oropharynx cancer in TAX 324: a subset analysis from an international phase III trial
    • Posner MR, Lorch JH, Goloubeva O, Tan M, Schumaker LM, Sarlis NJ, Haddad RI, Cullen KJ. Survival and human papillomavirus in oropharynx cancer in TAX 324: a subset analysis from an international phase III trial. Ann Oncol. 2011;22(5):1071-7.
    • (2011) Ann Oncol , vol.22 , Issue.5 , pp. 1071-1077
    • Posner, M.R.1    Lorch, J.H.2    Goloubeva, O.3    Tan, M.4    Schumaker, L.M.5    Sarlis, N.J.6    Haddad, R.I.7    Cullen, K.J.8
  • 10
    • 44949232259 scopus 로고    scopus 로고
    • Chemotherapy in the treatment of locally advanced head and neck cancer
    • Forastiere AA. Chemotherapy in the treatment of locally advanced head and neck cancer. J Surg Oncol. 2008;97(8):701-7.
    • (2008) J Surg Oncol , vol.97 , Issue.8 , pp. 701-707
    • Forastiere, A.A.1
  • 12
    • 84921000202 scopus 로고    scopus 로고
    • Treatment de-escalation in HPV-positive oropharyngeal carcinoma: ongoing trials, critical issues and perspectives
    • Mirghani H, Amen F, Blanchard P, Moreau F, Guigay J, Hartl DM, Lacau St Guily J. Treatment de-escalation in HPV-positive oropharyngeal carcinoma: ongoing trials, critical issues and perspectives. Int J Cancer. 2014;136(7):1494-503.
    • (2014) Int J Cancer , vol.136 , Issue.7 , pp. 1494-1503
    • Mirghani, H.1    Amen, F.2    Blanchard, P.3    Moreau, F.4    Guigay, J.5    Hartl, D.M.6    Lacau St Guily, J.7
  • 14
    • 77949890036 scopus 로고    scopus 로고
    • Biological and clinical relevance of transcriptionally active human papillomavirus (HPV) infection in oropharynx squamous cell carcinoma
    • Jung AC, Briolat J, Millon R, de Reynies A, Rickman D, Thomas E, Abecassis J, Clavel C, Wasylyk B. Biological and clinical relevance of transcriptionally active human papillomavirus (HPV) infection in oropharynx squamous cell carcinoma. Int J Cancer. 2010;126(8):1882-94.
    • (2010) Int J Cancer , vol.126 , Issue.8 , pp. 1882-1894
    • Jung, A.C.1    Briolat, J.2    Millon, R.3    de Reynies, A.4    Rickman, D.5    Thomas, E.6    Abecassis, J.7    Clavel, C.8    Wasylyk, B.9
  • 17
    • 77953359433 scopus 로고    scopus 로고
    • Refining the diagnosis of oropharyngeal squamous cell carcinoma using human papillomavirus testing
    • Robinson M, Sloan P, Shaw R. Refining the diagnosis of oropharyngeal squamous cell carcinoma using human papillomavirus testing. Oral Oncol. 2010;46(7):492-6.
    • (2010) Oral Oncol , vol.46 , Issue.7 , pp. 492-496
    • Robinson, M.1    Sloan, P.2    Shaw, R.3
  • 18
    • 77957955293 scopus 로고    scopus 로고
    • Prognostic significance of p16INK4A and human papillomavirus in patients with oropharyngeal cancer treated on TROG 02.02 phase III trial
    • Rischin D, Young RJ, Fisher R, Fox SB, Le QT, Peters LJ, Solomon B, Choi J, O'Sullivan B, Kenny LM, et al. Prognostic significance of p16INK4A and human papillomavirus in patients with oropharyngeal cancer treated on TROG 02.02 phase III trial. J Clin Oncol. 2011;28(27):4142-8.
    • (2011) J Clin Oncol , vol.28 , Issue.27 , pp. 4142-4148
    • Rischin, D.1    Young, R.J.2    Fisher, R.3    Fox, S.B.4    Le, Q.T.5    Peters, L.J.6    Solomon, B.7    Choi, J.8    O'Sullivan, B.9    Kenny, L.M.10
  • 19
    • 84864115182 scopus 로고    scopus 로고
    • HPV specific testing: a requirement for oropharyngeal squamous cell carcinoma patients
    • Robinson M, Schache A, Sloan P, Thavaraj S. HPV specific testing: a requirement for oropharyngeal squamous cell carcinoma patients. Head Neck Pathol. 2012;6 Suppl 1:S83-90.
    • (2012) Head Neck Pathol , vol.6 , pp. S83-S90
    • Robinson, M.1    Schache, A.2    Sloan, P.3    Thavaraj, S.4
  • 24
    • 43149084823 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products
    • Tomita N, Mori Y, Kanda H, Notomi T. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Nat Protoc. 2008;3(5):877-82.
    • (2008) Nat Protoc , vol.3 , Issue.5 , pp. 877-882
    • Tomita, N.1    Mori, Y.2    Kanda, H.3    Notomi, T.4
  • 25
    • 0035940965 scopus 로고    scopus 로고
    • Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation
    • Mori Y, Nagamine K, Tomita N, Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem Biophys Res Commun. 2001;289(1):150-4.
    • (2001) Biochem Biophys Res Commun , vol.289 , Issue.1 , pp. 150-154
    • Mori, Y.1    Nagamine, K.2    Tomita, N.3    Notomi, T.4
  • 26
    • 31844450172 scopus 로고    scopus 로고
    • Sensitive and inexpensive molecular test for falciparum malaria: detecting plasmodium falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification
    • Poon LL, Wong BW, Ma EH, Chan KH, Chow LM, Abeyewickreme W, Tangpukdee N, Yuen KY, Guan Y, Looareesuwan S, et al. Sensitive and inexpensive molecular test for falciparum malaria: detecting plasmodium falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification. Clin Chem. 2006;52(2):303-6.
    • (2006) Clin Chem , vol.52 , Issue.2 , pp. 303-306
    • Poon, L.L.1    Wong, B.W.2    Ma, E.H.3    Chan, K.H.4    Chow, L.M.5    Abeyewickreme, W.6    Tangpukdee, N.7    Yuen, K.Y.8    Guan, Y.9    Looareesuwan, S.10
  • 27
    • 34249892289 scopus 로고    scopus 로고
    • Operational feasibility of using loop-mediated isothermal amplification for diagnosis of pulmonary tuberculosis in microscopy centers of developing countries
    • Boehme CC, Nabeta P, Henostroza G, Raqib R, Rahim Z, Gerhardt M, Sanga E, Hoelscher M, Notomi T, Hase T, et al. Operational feasibility of using loop-mediated isothermal amplification for diagnosis of pulmonary tuberculosis in microscopy centers of developing countries. J Clin Microbiol. 2007;45(6):1936-40.
    • (2007) J Clin Microbiol , vol.45 , Issue.6 , pp. 1936-1940
    • Boehme, C.C.1    Nabeta, P.2    Henostroza, G.3    Raqib, R.4    Rahim, Z.5    Gerhardt, M.6    Sanga, E.7    Hoelscher, M.8    Notomi, T.9    Hase, T.10
  • 28
    • 34147160688 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification method for detection of human papillomavirus type 6, 11, 16, and 18
    • Hagiwara M, Sasaki H, Matsuo K, Honda M, Kawase M, Nakagawa H. Loop-mediated isothermal amplification method for detection of human papillomavirus type 6, 11, 16, and 18. J Med Virol. 2007;79(5):605-15.
    • (2007) J Med Virol , vol.79 , Issue.5 , pp. 605-615
    • Hagiwara, M.1    Sasaki, H.2    Matsuo, K.3    Honda, M.4    Kawase, M.5    Nakagawa, H.6
  • 29
    • 0038519306 scopus 로고    scopus 로고
    • Loop-mediated isothermal amplification for direct detection of mycobacterium tuberculosis complex, M. Avium, and M. Intracellulare in sputum samples
    • Iwamoto T, Sonobe T, Hayashi K. Loop-mediated isothermal amplification for direct detection of mycobacterium tuberculosis complex, M. Avium, and M. Intracellulare in sputum samples. J Clin Microbiol. 2003;41(6):2616-22.
    • (2003) J Clin Microbiol , vol.41 , Issue.6 , pp. 2616-2622
    • Iwamoto, T.1    Sonobe, T.2    Hayashi, K.3
  • 30
    • 80053473354 scopus 로고    scopus 로고
    • Visual detection of high-risk human papillomavirus genotypes 16, 18, 45, 52, and 58 by loop-mediated isothermal amplification with hydroxynaphthol blue dye
    • Luo L, Nie K, Yang MJ, Wang M, Li J, Zhang C, Liu HT, Ma XJ. Visual detection of high-risk human papillomavirus genotypes 16, 18, 45, 52, and 58 by loop-mediated isothermal amplification with hydroxynaphthol blue dye. J Clin Microbiol. 2013;49(10):3545-50.
    • (2013) J Clin Microbiol , vol.49 , Issue.10 , pp. 3545-3550
    • Luo, L.1    Nie, K.2    Yang, M.J.3    Wang, M.4    Li, J.5    Zhang, C.6    Liu, H.T.7    Ma, X.J.8
  • 32
    • 80955158497 scopus 로고    scopus 로고
    • Rapid detection of the most common high-risk human papillomaviruses by loop-mediated isothermal amplification
    • Saetiew C, Limpaiboon T, Jearanaikoon P, Daduang S, Pientong C, Kerdsin A, Daduang J. Rapid detection of the most common high-risk human papillomaviruses by loop-mediated isothermal amplification. J Virol Methods. 2011;178(1-2):22-30.
    • (2011) J Virol Methods , vol.178 , Issue.1-2 , pp. 22-30
    • Saetiew, C.1    Limpaiboon, T.2    Jearanaikoon, P.3    Daduang, S.4    Pientong, C.5    Kerdsin, A.6    Daduang, J.7
  • 33
    • 84872196153 scopus 로고    scopus 로고
    • Rapid genotyping of carcinogenic human papillomavirus by loop-mediated isothermal amplification using a new automated DNA test (Clinichip HPV)
    • Satoh T, Matsumoto K, Fujii T, Sato O, Gemma N, Onuki M, Saito H, Aoki D, Hirai Y, Yoshikawa H. Rapid genotyping of carcinogenic human papillomavirus by loop-mediated isothermal amplification using a new automated DNA test (Clinichip HPV). J Virol Methods. 2013;188(1-2):83-93.
    • (2013) J Virol Methods , vol.188 , Issue.1-2 , pp. 83-93
    • Satoh, T.1    Matsumoto, K.2    Fujii, T.3    Sato, O.4    Gemma, N.5    Onuki, M.6    Saito, H.7    Aoki, D.8    Hirai, Y.9    Yoshikawa, H.10
  • 34
    • 84856497456 scopus 로고    scopus 로고
    • Prevalence of human papillomavirus in mobile tongue cancer with particular reference to young patients
    • Kabeya M, Furuta R, Kawabata K, Takahashi S, Ishikawa Y. Prevalence of human papillomavirus in mobile tongue cancer with particular reference to young patients. Cancer Sci. 2013;103(2):161-8.
    • (2013) Cancer Sci , vol.103 , Issue.2 , pp. 161-168
    • Kabeya, M.1    Furuta, R.2    Kawabata, K.3    Takahashi, S.4    Ishikawa, Y.5
  • 35
    • 84955447923 scopus 로고    scopus 로고
    • Loop mediated isothermal amplification (LAMP) for the detection and subtyping of human papillomaviruses (HPV) in oropharyngeal squamous cell carcinoma (OPSCC)
    • Livingstone DM, Rohatensky M, Mintchev P, Nakoneshny SC, Demetrick DJ, van Marle G, Dort JC. Loop mediated isothermal amplification (LAMP) for the detection and subtyping of human papillomaviruses (HPV) in oropharyngeal squamous cell carcinoma (OPSCC). J Clin Virol. 2016;75:37-41.
    • (2016) J Clin Virol , vol.75 , pp. 37-41
    • Livingstone, D.M.1    Rohatensky, M.2    Mintchev, P.3    Nakoneshny, S.C.4    Demetrick, D.J.5    van Marle, G.6    Dort, J.C.7
  • 36
    • 0032987565 scopus 로고    scopus 로고
    • Nucleotide sequences and further characterization of human papillomavirus DNA present in the CaSki, SiHa and HeLa cervical carcinoma cell lines
    • Meissner JD. Nucleotide sequences and further characterization of human papillomavirus DNA present in the CaSki, SiHa and HeLa cervical carcinoma cell lines. J Gen Virol. 1999;80(Pt 7):1725-33.
    • (1999) J Gen Virol , vol.80 , pp. 1725-1733
    • Meissner, J.D.1
  • 40
    • 84993945043 scopus 로고    scopus 로고
    • Rapid and sensitive detection of Zika virus by reverse transcription loop-mediated isothermal amplification
    • Wang X, Yin F, Bi Y, Cheng G, Li J, Hou L, Li Y, Yang B, Liu W, Yang L. Rapid and sensitive detection of Zika virus by reverse transcription loop-mediated isothermal amplification. J Virol Methods. 2016;238:86-93.
    • (2016) J Virol Methods , vol.238 , pp. 86-93
    • Wang, X.1    Yin, F.2    Bi, Y.3    Cheng, G.4    Li, J.5    Hou, L.6    Li, Y.7    Yang, B.8    Liu, W.9    Yang, L.10
  • 41
    • 84959288239 scopus 로고    scopus 로고
    • Development and evaluation of reverse transcription-loop-mediated isothermal amplification (RT-LAMP) assay coupled with a portable device for rapid diagnosis of Ebola virus disease in Guinea
    • Kurosaki Y, Magassouba N, Oloniniyi OK, Cherif MS, Sakabe S, Takada A, Hirayama K, Yasuda J. Development and evaluation of reverse transcription-loop-mediated isothermal amplification (RT-LAMP) assay coupled with a portable device for rapid diagnosis of Ebola virus disease in Guinea. PLoS Negl Trop Dis. 2016;10(2):e0004472.
    • (2016) PLoS Negl Trop Dis , vol.10 , Issue.2
    • Kurosaki, Y.1    Magassouba, N.2    Oloniniyi, O.K.3    Cherif, M.S.4    Sakabe, S.5    Takada, A.6    Hirayama, K.7    Yasuda, J.8
  • 42
    • 84918829951 scopus 로고    scopus 로고
    • Advanced loop-mediated isothermal amplification method for sensitive and specific detection of tomato chlorosis virus using a uracil DNA glycosylase to control carry-over contamination
    • Kil EJ, Kim S, Lee YJ, Kang EH, Lee M, Cho SH, Kim MK, Lee KY, Heo NY, Choi HS, et al. Advanced loop-mediated isothermal amplification method for sensitive and specific detection of tomato chlorosis virus using a uracil DNA glycosylase to control carry-over contamination. J Virol Methods. 2015;213:68-74.
    • (2015) J Virol Methods , vol.213 , pp. 68-74
    • Kil, E.J.1    Kim, S.2    Lee, Y.J.3    Kang, E.H.4    Lee, M.5    Cho, S.H.6    Kim, M.K.7    Lee, K.Y.8    Heo, N.Y.9    Choi, H.S.10
  • 43
    • 39649124470 scopus 로고    scopus 로고
    • African trypanosomiasis: sensitive and rapid detection of the sub-genus Trypanozoon by loop-mediated isothermal amplification (LAMP) of parasite DNA
    • Njiru ZK, Mikosza AS, Matovu E, Enyaru JC, Ouma JO, Kibona SN, Thompson RC, Ndung'u JM. African trypanosomiasis: sensitive and rapid detection of the sub-genus Trypanozoon by loop-mediated isothermal amplification (LAMP) of parasite DNA. Int J Parasitol. 2008;38(5):589-99.
    • (2008) Int J Parasitol , vol.38 , Issue.5 , pp. 589-599
    • Njiru, Z.K.1    Mikosza, A.S.2    Matovu, E.3    Enyaru, J.C.4    Ouma, J.O.5    Kibona, S.N.6    Thompson, R.C.7    Ndung'u, J.M.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.